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TCONS_00073379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073379
Unique NameTCONS_00073379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073379 ID=TCONS_00073379|Name=TCONS_00073379|organism=Clytia hemisphaerica|type=transcript|length=1201bp
GTTTGCGATGTTTATGTAGAGTGAGAATTTTGCAAACGGAGTGGAACAAG
ATGGCGGAGTTTTTATTCCACAAAGGTTCTCCTACGTACTTACAACCGGA
AAATGCTGATGTTATGAACATCAGCCAGTTTATGGCACAAAACCTTCGAC
AAGCACCACCACCATTAGCTCCTCCAACAAAGCATACATTCGAAATATCA
GAAGGTGAAAGCgttgaaatcgaaaaaatagTTGCTGCGGAGAAGAAGGT
AAAAACCCTCACCCCTCACCCTCTTTATTATGTTTGTGTCTCCCCCACAC
CTAAAATTaggataaaataattataaatttttcaaaacactaTCTTCTTC
TTTGCAATGAACAGCTAAACATATTGCCCTTTGAAAAGTGTTTATCTCTT
GTCGTAAAAAGAGTATATAGCATATCTAACATAAATCAAGATATAAAACT
AGGTAAGTCACTTTTTGGTCTTTTGTAGCTTCTAACCTATAAAGAGAAGG
TACTTTGGTACTTGATATGAAACCACTGCTTGTTTATAAACCTCTTTTGA
TAACTACTACTAGTATGTACTTTTCATTTCAATGCCACTTTTTTCCCATG
TTGCTTGGAATATAATTTTAGGTCAGAAAAACTTTAAGAGAGAAATTATA
ATTTAATGATGTACTGATATTGAATTTCCACCATAATCATAAACATTGTC
AGTCAgtgatttgtttttaaattagcTGATCTTCAGTTTTTTCTGGCTCG
ATTCTTTAGTTAGGGGAGAACTCATCAGTTTTATAACTGGTCATCAGTTT
TTTCAGCCTACAGTATATCCTAGACTCTCCACTTTATATAATCAAAAACC
AATCAATGGATTGGATATTGATTGATTCCGGTACAGACAGCATTCCcata
attcaaacttctcagaaatgacctgtgggaaaatgtgcgctccttCCACT
GTTGTGTTTAGGAGGTAATGAACGTTTTGCCTACAAGGGGATAGGGAAAG
TGgattttcagcttctaactttttaTAGAGATCTCTTTgattgtgatcga
agtaatcCATCGGATACTCACTCGACTCCAGAGTATGGCATTTTCTACGA
CCATTTTcaatttgttcaatcatttcaaTTACTTTTCGATTATATACCTT
CGATTTTATATAATATGTTTCCTGTAGCAGTtcgtcaaaataatctgaaa
t
Run BLAST on NCBI

protein sequence of TCONS_00073379-protein

>TCONS_00073379-protein ID=TCONS_00073379-protein|Name=TCONS_00073379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
ISDYFDELLQETYYIKSKVYNRKVIEMIEQIENGRRKCHTLESSEYPMDY
FDHNQRDLYKKLEAENPLSLSPCRQNVHYLLNTTVEGAHIFPQVISEKFE
LWECCLYRNQSISNPLIGF
Run BLAST on NCBI

transcript from alignment at scaffold_90:252500..253700

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073379 ID=TCONS_00073379|Name=TCONS_00073379|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at scaffold_90:252500..253700 (Clytia hemisphaerica)
atttcagattattttgacgaACTGCTACAGGAAACATATTATATAAAATC GAAGGTATATAATCGAAAAGTAAttgaaatgattgaacaaattgAAAATG GTCGTAGAAAATGCCATACTCTGGAGTCGAGTGAGTATCCGATGgattac ttcgatcacaatcAAAGAGATCTCTAtaaaaagttagaagctgaaaatcC ACTTTCCCTATCCCCTTGTAGGCAAAACGTTCATTACCTCCTAAACACAA CAGTGGaaggagcgcacattttcccacaggtcatttctgagaagtttgaa ttatgGGAATGCTGTCTGTACCGGAATCAATCAATATCCAATCCATTGAT TGGTTTTTGATTATATAAAGTGGAGAGTCTAGGATATACTGTAGGCTGAA AAAACTGATGACCAGTTATAAAACTGATGAGTTCTCCCCTAACTAAAGAA TCGAGCCAGAAAAAACTGAAGATCAgctaatttaaaaacaaatcacTGAC TGACAATGTTTATGATTATGGTGGAAATTCAATATCAGTACATCATTAAA TTATAATTTCTCTCTTAAAGTTTTTCTGACCTAAAATTATATTCCAAGCA ACATGGGAAAAAAGTGGCATTGAAATGAAAAGTACATACTAGTAGTAGTT ATCAAAAGAGGTTTATAAACAAGCAGTGGTTTCATATCAAGTACCAAAGT ACCTTCTCTTTATAGGTTAGAAGCTACAAAAGACCAAAAAGTGACTTACC TAGTTTTATATCTTGATTTATGTTAGATATGCTATATACTCTTTTTACGA CAAGAGATAAACACTTTTCAAAGGGCAATATGTTTAGCTGTTCATTGCAA AGAAGAAGAtagtgttttgaaaaatttataattattttatcctAATTTTA GGTGTGGGGGAGACACAAACATAATAAAGAGGGTGAGGGGTGAGGGTTTT TACCTTCTTCTCCGCAGCAActattttttcgatttcaacGCTTTCACCTT CTGATATTTCGAATGTATGCTTTGTTGGAGGAGCTAATGGTGGTGGTGCT TGTCGAAGGTTTTGTGCCATAAACTGGCTGATGTTCATAACATCAGCATT TTCCGGTTGTAAGTACGTAGGAGAACCTTTGTGGAATAAAAACTCCGCCA TCTTGTTCCACTCCGTTTGCAAAATTCTCACTCTACATAAACATCGCAAA C

Coding sequence (CDS) from alignment at scaffold_90:252500..253700

>TCONS_00073379 ID=TCONS_00073379|Name=TCONS_00073379|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_90:252500..253700 (Clytia hemisphaerica)
atttcagattattttgacgaACTGCTACAGGAAACATATTATATAAAATC
GAAGGTATATAATCGAAAAGTAAttgaaatgattgaacaaattgAAAATG
GTCGTAGAAAATGCCATACTCTGGAGTCGAGTGAGTATCCGATGgattac
ttcgatcacaatcAAAGAGATCTCTAtaaaaagttagaagctgaaaatcC
ACTTTCCCTATCCCCTTGTAGGCAAAACGTTCATTACCTCCTAAACACAA
CAGTGGaaggagcgcacattttcccacaggtcatttctgagaagtttgaa
ttatgGGAATGCTGTCTGTACCGGAATCAATCAATATCCAATCCATTGAT
TGGTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045533XLOC_045533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073379-exon-scaffold_90-1491911889:252500..253700TCONS_00073379-exon-scaffold_90-1491911889:252500..253700Clytia hemisphaericaexon
TCONS_00073379-exon-scaffold_90-1510915933:252500..253700TCONS_00073379-exon-scaffold_90-1510915933:252500..253700Clytia hemisphaericaexon
TCONS_00073379-exon-scaffold_90-1575043694:252500..253700TCONS_00073379-exon-scaffold_90-1575043694:252500..253700Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073379-proteinTCONS_00073379-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:252500..253700 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03715 1.18576 2.51061 2.33739 3.95482 3.23949 2.85076 3.87414 2.23018 3.73302 2.35518 1.9293 2.21204 1.87731 1.76679 2.61522 2.68478 3.57736 1.36864 1.98914 2.2476 2.47933 6.15092 5.07015 2.61107 1.95335 2.20677 2.19812 5.75579 6.9562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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