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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073379 ID=TCONS_00073379|Name=TCONS_00073379|organism=Clytia hemisphaerica|type=transcript|length=1201bp
GTTTGCGATGTTTATGTAGAGTGAGAATTTTGCAAACGGAGTGGAACAAG
ATGGCGGAGTTTTTATTCCACAAAGGTTCTCCTACGTACTTACAACCGGA
AAATGCTGATGTTATGAACATCAGCCAGTTTATGGCACAAAACCTTCGAC
AAGCACCACCACCATTAGCTCCTCCAACAAAGCATACATTCGAAATATCA
GAAGGTGAAAGCgttgaaatcgaaaaaatagTTGCTGCGGAGAAGAAGGT
AAAAACCCTCACCCCTCACCCTCTTTATTATGTTTGTGTCTCCCCCACAC
CTAAAATTaggataaaataattataaatttttcaaaacactaTCTTCTTC
TTTGCAATGAACAGCTAAACATATTGCCCTTTGAAAAGTGTTTATCTCTT
GTCGTAAAAAGAGTATATAGCATATCTAACATAAATCAAGATATAAAACT
AGGTAAGTCACTTTTTGGTCTTTTGTAGCTTCTAACCTATAAAGAGAAGG
TACTTTGGTACTTGATATGAAACCACTGCTTGTTTATAAACCTCTTTTGA
TAACTACTACTAGTATGTACTTTTCATTTCAATGCCACTTTTTTCCCATG
TTGCTTGGAATATAATTTTAGGTCAGAAAAACTTTAAGAGAGAAATTATA
ATTTAATGATGTACTGATATTGAATTTCCACCATAATCATAAACATTGTC
AGTCAgtgatttgtttttaaattagcTGATCTTCAGTTTTTTCTGGCTCG
ATTCTTTAGTTAGGGGAGAACTCATCAGTTTTATAACTGGTCATCAGTTT
TTTCAGCCTACAGTATATCCTAGACTCTCCACTTTATATAATCAAAAACC
AATCAATGGATTGGATATTGATTGATTCCGGTACAGACAGCATTCCcata
attcaaacttctcagaaatgacctgtgggaaaatgtgcgctccttCCACT
GTTGTGTTTAGGAGGTAATGAACGTTTTGCCTACAAGGGGATAGGGAAAG
TGgattttcagcttctaactttttaTAGAGATCTCTTTgattgtgatcga
agtaatcCATCGGATACTCACTCGACTCCAGAGTATGGCATTTTCTACGA
CCATTTTcaatttgttcaatcatttcaaTTACTTTTCGATTATATACCTT
CGATTTTATATAATATGTTTCCTGTAGCAGTtcgtcaaaataatctgaaa
t Run BLAST on NCBI protein sequence of TCONS_00073379-protein >TCONS_00073379-protein ID=TCONS_00073379-protein|Name=TCONS_00073379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
ISDYFDELLQETYYIKSKVYNRKVIEMIEQIENGRRKCHTLESSEYPMDY
FDHNQRDLYKKLEAENPLSLSPCRQNVHYLLNTTVEGAHIFPQVISEKFE
LWECCLYRNQSISNPLIGF Run BLAST on NCBI transcript from alignment at scaffold_90:252500..253700 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073379 ID=TCONS_00073379|Name=TCONS_00073379|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at scaffold_90:252500..253700 (Clytia hemisphaerica)
atttcagattattttgacgaACTGCTACAGGAAACATATTATATAAAATC
GAAGGTATATAATCGAAAAGTAAttgaaatgattgaacaaattgAAAATG
GTCGTAGAAAATGCCATACTCTGGAGTCGAGTGAGTATCCGATGgattac
ttcgatcacaatcAAAGAGATCTCTAtaaaaagttagaagctgaaaatcC
ACTTTCCCTATCCCCTTGTAGGCAAAACGTTCATTACCTCCTAAACACAA
CAGTGGaaggagcgcacattttcccacaggtcatttctgagaagtttgaa
ttatgGGAATGCTGTCTGTACCGGAATCAATCAATATCCAATCCATTGAT
TGGTTTTTGATTATATAAAGTGGAGAGTCTAGGATATACTGTAGGCTGAA
AAAACTGATGACCAGTTATAAAACTGATGAGTTCTCCCCTAACTAAAGAA
TCGAGCCAGAAAAAACTGAAGATCAgctaatttaaaaacaaatcacTGAC
TGACAATGTTTATGATTATGGTGGAAATTCAATATCAGTACATCATTAAA
TTATAATTTCTCTCTTAAAGTTTTTCTGACCTAAAATTATATTCCAAGCA
ACATGGGAAAAAAGTGGCATTGAAATGAAAAGTACATACTAGTAGTAGTT
ATCAAAAGAGGTTTATAAACAAGCAGTGGTTTCATATCAAGTACCAAAGT
ACCTTCTCTTTATAGGTTAGAAGCTACAAAAGACCAAAAAGTGACTTACC
TAGTTTTATATCTTGATTTATGTTAGATATGCTATATACTCTTTTTACGA
CAAGAGATAAACACTTTTCAAAGGGCAATATGTTTAGCTGTTCATTGCAA
AGAAGAAGAtagtgttttgaaaaatttataattattttatcctAATTTTA
GGTGTGGGGGAGACACAAACATAATAAAGAGGGTGAGGGGTGAGGGTTTT
TACCTTCTTCTCCGCAGCAActattttttcgatttcaacGCTTTCACCTT
CTGATATTTCGAATGTATGCTTTGTTGGAGGAGCTAATGGTGGTGGTGCT
TGTCGAAGGTTTTGTGCCATAAACTGGCTGATGTTCATAACATCAGCATT
TTCCGGTTGTAAGTACGTAGGAGAACCTTTGTGGAATAAAAACTCCGCCA
TCTTGTTCCACTCCGTTTGCAAAATTCTCACTCTACATAAACATCGCAAA
C Coding sequence (CDS) from alignment at scaffold_90:252500..253700 >TCONS_00073379 ID=TCONS_00073379|Name=TCONS_00073379|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_90:252500..253700 (Clytia hemisphaerica)
atttcagattattttgacgaACTGCTACAGGAAACATATTATATAAAATC
GAAGGTATATAATCGAAAAGTAAttgaaatgattgaacaaattgAAAATG
GTCGTAGAAAATGCCATACTCTGGAGTCGAGTGAGTATCCGATGgattac
ttcgatcacaatcAAAGAGATCTCTAtaaaaagttagaagctgaaaatcC
ACTTTCCCTATCCCCTTGTAGGCAAAACGTTCATTACCTCCTAAACACAA
CAGTGGaaggagcgcacattttcccacaggtcatttctgagaagtttgaa
ttatgGGAATGCTGTCTGTACCGGAATCAATCAATATCCAATCCATTGAT
TGGTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073379-exon-scaffold_90-1491911889:252500..253700 | TCONS_00073379-exon-scaffold_90-1491911889:252500..253700 | Clytia hemisphaerica | exon |
| TCONS_00073379-exon-scaffold_90-1510915933:252500..253700 | TCONS_00073379-exon-scaffold_90-1510915933:252500..253700 | Clytia hemisphaerica | exon |
| TCONS_00073379-exon-scaffold_90-1575043694:252500..253700 | TCONS_00073379-exon-scaffold_90-1575043694:252500..253700 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_90 | supercontig | scaffold_90:252500..253700 . |
Blast
The following BLAST results are available for this feature:
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