Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073374
Unique NameTCONS_00073374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073374 ID=TCONS_00073374|Name=TCONS_00073374|organism=Clytia hemisphaerica|type=transcript|length=282bp
gcgagagtttacTGTAAAATGTTTGTTCCCTTGaagattgaattagagag
aatcaACTGCTAACAGTACATGTCATCTTCATCCAAATATTACAGTACAA
ATAATGCATTGCGCTCAATATCCGAAACGTAAACTTTATCCGTACCATCA
ACCACAACACCGTACGGTTGTTTGAAAGTAATTTCACGACCATGACTGTC
CGTGATTCCCGACACGCGTGTCGTCGTGTTCGTGTGAAGATCAATGATCA
ATAGTTGAGCGTTCTCACGATCGGTGACTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_90:131202..131483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073374 ID=TCONS_00073374|Name=TCONS_00073374|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at scaffold_90:131202..131483 (Clytia hemisphaerica)
CTTAGTCACCGATCGTGAGAACGCTCAACTATTGATCATTGATCTTCACA CGAACACGACGACACGCGTGTCGGGAATCACGGACAGTCATGGTCGTGAA ATTACTTTCAAACAACCGTACGGTGTTGTGGTTGATGGTACGGATAAAGT TTACGTTTCGGATATTGAGCGCAATGCATTATTTGTACTGTAATATTTGG ATGAAGATGACATGTACTGTTAGCAGTtgattctctctaattcaatcttC AAGGGAACAAACATTTTACAgtaaactctcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045528XLOC_045528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073374-exon-scaffold_90-1491911889:131202..131483TCONS_00073374-exon-scaffold_90-1491911889:131202..131483Clytia hemisphaericaexon
TCONS_00073374-exon-scaffold_90-1510915933:131202..131483TCONS_00073374-exon-scaffold_90-1510915933:131202..131483Clytia hemisphaericaexon
TCONS_00073374-exon-scaffold_90-1575043694:131202..131483TCONS_00073374-exon-scaffold_90-1575043694:131202..131483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:131202..131483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.06634 2.49292 2.67601 4.20536 38.2909 18.8813 19.9116 28.0203 18.5187 28.7059 20.4586 13.4606 11.5235 12.4475 12.4301 20.778 15.695 13.7663 22.6688 13.9102 12.6357 15.6723 13.3755 17.1011 11.5647 13.3616 12.6116 13.191 5.20792 4.84308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top