TCONS_00073372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073372
Unique NameTCONS_00073372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073372 ID=TCONS_00073372|Name=TCONS_00073372|organism=Clytia hemisphaerica|type=transcript|length=463bp
AGCAAGTGGTTGTTGTTCCAAGAGGCCAGGCGCGTTATGAGATGCTAATC
GTCGTAGGATATTTGATGACGATCTGGTAACCGTTGCTTGTGTTGGTTGT
GCTGGCTGAGGCTGAGCGGGCATAGGAACTGTTGGATGAGGAATAGTTGG
AGGAGTGGTCTCTAATGGTGAGGCTGGAGGCAGATTGGTGGGTGTGGGTA
GTGCTGTTGGTGATACAAATGTTGCTGGTCGAAGGAAGCGACGATTTTGC
AGTGTCACCCTCCCTGAGCCATTGGTTCTGACTCTGTATTGTCTGTTAGG
GAGTGTTTCTACAATCATCCCAGAGCGGATCCATCGGCGTTGATGCTTCT
TACTACGGTTTTGGATGACGACAGCAGTTCCAACCGATAGGGACGGTAAT
GTTTTGGCGTGTCTGTTGTACTTCTCACTGATGACATGGTTTCGTTTGGA
GAATGCTTCTTCC
Run BLAST on NCBI

protein sequence of TCONS_00073372-protein

>TCONS_00073372-protein ID=TCONS_00073372-protein|Name=TCONS_00073372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
EEAFSKRNHVISEKYNRHAKTLPSLSVGTAVVIQNRSKKHQRRWIRSGMI
VETLPNRQYRVRTNGSGRVTLQNRRFLRPATFVSPTALPTPTNLPPASPL
ETTPPTIPHPTVPMPAQPQPAQPTQATVTRSSSNILRRLASHNAPGLLEQ
QPLA
Run BLAST on NCBI

transcript from alignment at scaffold_90:112009..112471

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073372 ID=TCONS_00073372|Name=TCONS_00073372|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at scaffold_90:112009..112471 (Clytia hemisphaerica)
GGAAGAAGCATTCTCCAAACGAAACCATGTCATCAGTGAGAAGTACAACA
GACACGCCAAAACATTACCGTCCCTATCGGTTGGAACTGCTGTCGTCATC
CAAAACCGTAGTAAGAAGCATCAACGCCGATGGATCCGCTCTGGGATGAT
TGTAGAAACACTCCCTAACAGACAATACAGAGTCAGAACCAATGGCTCAG
GGAGGGTGACACTGCAAAATCGTCGCTTCCTTCGACCAGCAACATTTGTA
TCACCAACAGCACTACCCACACCCACCAATCTGCCTCCAGCCTCACCATT
AGAGACCACTCCTCCAACTATTCCTCATCCAACAGTTCCTATGCCCGCTC
AGCCTCAGCCAGCACAACCAACACAAGCAACGGTTACCAGATCGTCATCA
AATATCCTACGACGATTAGCATCTCATAACGCGCCTGGCCTCTTGGAACA
ACAACCACTTGCT

Coding sequence (CDS) from alignment at scaffold_90:112009..112471

>TCONS_00073372 ID=TCONS_00073372|Name=TCONS_00073372|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_90:112009..112471 (Clytia hemisphaerica)
GAAGAAGCATTCTCCAAACGAAACCATGTCATCAGTGAGAAGTACAACAG
ACACGCCAAAACATTACCGTCCCTATCGGTTGGAACTGCTGTCGTCATCC
AAAACCGTAGTAAGAAGCATCAACGCCGATGGATCCGCTCTGGGATGATT
GTAGAAACACTCCCTAACAGACAATACAGAGTCAGAACCAATGGCTCAGG
GAGGGTGACACTGCAAAATCGTCGCTTCCTTCGACCAGCAACATTTGTAT
CACCAACAGCACTACCCACACCCACCAATCTGCCTCCAGCCTCACCATTA
GAGACCACTCCTCCAACTATTCCTCATCCAACAGTTCCTATGCCCGCTCA
GCCTCAGCCAGCACAACCAACACAAGCAACGGTTACCAGATCGTCATCAA
ATATCCTACGACGATTAGCATCTCATAACGCGCCTGGCCTCTTGGAACAA
CAACCACTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045526XLOC_045526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073372-exon-scaffold_90-1491911889:112009..112471TCONS_00073372-exon-scaffold_90-1491911889:112009..112471Clytia hemisphaericaexon
TCONS_00073372-exon-scaffold_90-1510915933:112009..112471TCONS_00073372-exon-scaffold_90-1510915933:112009..112471Clytia hemisphaericaexon
TCONS_00073372-exon-scaffold_90-1575043694:112009..112471TCONS_00073372-exon-scaffold_90-1575043694:112009..112471Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073372-proteinTCONS_00073372-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:112009..112471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.63068	0.624778	4.04515	3.17903	5.44388	3.88818	2.49167	3.80231	2.27049	2.95664	2.07032	2.08732	0.562883	1.45887	0.228605	0.293864	0	0.651088	0.148479	0.646043	0.334048	0	0	0.1456	0.780706	0.549825	0	0.220078	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top