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TCONS_00073371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073371
Unique NameTCONS_00073371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073371 ID=TCONS_00073371|Name=TCONS_00073371|organism=Clytia hemisphaerica|type=transcript|length=1051bp
GAGTATTTCTGTATTGTAAGATTGCTCGAGAAACCTTGTTGTTGTCGATT
GTGCCATTTGGTGATAAGTTATCGAGTAGAATTCTTTTTGCAGCTTTCAC
CCCTAGTTCTGCTCTGCCATTAGACTGGGGGTACTCTGCCGATGATAGAC
GGTGTTTGACTCCCCAATCTGATAAGAATTGTTTGAACTTGTTTGCGGTT
AACTGAGGTCCTCCATCTGAACTGAATTCTTCTGGAACGCCGTAGTTAGT
GAAGAGGGTGCGACAAGTGGATATCAGGGTGGCACTGGTGGCTTCATTGG
GTCCAAAATGATATAGGCAGTTCCAGCCGCTATATTTATCAATGATCGTC
AGATAGTGGTGACTTGCGACAATGAAATAATCACCGGTGATCATTTGGAA
TGGATATTGCGGTGGAGGGCTTTGGATGATCGGTTCCTTGGGCTGACTGG
GTGAGTGACTGATACAAGTTTTACAGCAATCACGGATTCGGTGGATATCT
TTGTTGATTCCCGGCCAATAGATACAATCGTTGACTCAAGCCTGCATACC
TGTGCATCCTTGATGGGCGGAATGAAGCGCTTGAAGGATCTGATGACGGA
GGTTCCTGGGTATCACGAGGGGTTTGTCTAACATTATGAGACCATTCCAA
TGCGATAGACGATTTCTAACTTCCCAGAATGGTCGTAGATTGGCAGGTAG
GNNNNNNCTTGGGTATCACGAGGCGTTTGTCTAACATTATGAGACCATTC
CAATGCGATAGACGATTTCTAACTTCCCAGAATGGTCGTAGATTGGCAGG
TAGGCTTTCACGGGCTGTTGGGAAGCCGTCCTGGATGGTTTGTAGCAGTG
ATGAGTAGTCAGTATCAGTTGATCCATGTTGACGTATCTGATCGAGAGTA
AGAAGTTGAACATGGTCAGTTGTTTGGCACATATTGATGGCGGAAATGGC
ATTGACTTCTGAATCGATGTCTGGATTTCGATCATCTTCTGTCATGGTAG
CACTAGTTGTCGTTTGACGCAATACTCTCATGGTCTCCTTGTATGAGTCG
A
Run BLAST on NCBI

protein sequence of TCONS_00073371-protein

>TCONS_00073371-protein ID=TCONS_00073371-protein|Name=TCONS_00073371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MITGDYFIVASHHYLTIIDKYSGWNCLYHFGPNEATSATLISTCRTLFTN
YGVPEEFSSDGGPQLTANKFKQFLSDWGVKHRLSSAEYPQSNGRAELGVK
AAKRILLDNLSPNGTIDNNKVSRAILQYRNT
Run BLAST on NCBI

transcript from alignment at scaffold_90:110715..111765

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073371 ID=TCONS_00073371|Name=TCONS_00073371|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at scaffold_90:110715..111765 (Clytia hemisphaerica)
TCGACTCATACAAGGAGACCATGAGAGTATTGCGTCAAACGACAACTAGT GCTACCATGACAGAAGATGATCGAAATCCAGACATCGATTCAGAAGTCAA TGCCATTTCCGCCATCAATATGTGCCAAACAACTGACCATGTTCAACTTC TTACTCTCGATCAGATACGTCAACATGGATCAACTGATACTGACTACTCA TCACTGCTACAAACCATCCAGGACGGCTTCCCAACAGCCCGTGAAAGCCT ACCTGCCAATCTACGACCATTCTGGGAAGTTAGAAATCGTCTATCGCATT GGAATGGTCTCATAATGTTAGACAAACGCCTCGTGATACCCAAGNNNNNN CCTACCTGCCAATCTACGACCATTCTGGGAAGTTAGAAATCGTCTATCGC ATTGGAATGGTCTCATAATGTTAGACAAACCCCTCGTGATACCCAGGAAC CTCCGTCATCAGATCCTTCAAGCGCTTCATTCCGCCCATCAAGGATGCAC AGGTATGCAGGCTTGAGTCAACGATTGTATCTATTGGCCGGGAATCAACA AAGATATCCACCGAATCCGTGATTGCTGTAAAACTTGTATCAGTCACTCA CCCAGTCAGCCCAAGGAACCGATCATCCAAAGCCCTCCACCGCAATATCC ATTCCAAATGATCACCGGTGATTATTTCATTGTCGCAAGTCACCACTATC TGACGATCATTGATAAATATAGCGGCTGGAACTGCCTATATCATTTTGGA CCCAATGAAGCCACCAGTGCCACCCTGATATCCACTTGTCGCACCCTCTT CACTAACTACGGCGTTCCAGAAGAATTCAGTTCAGATGGAGGACCTCAGT TAACCGCAAACAAGTTCAAACAATTCTTATCAGATTGGGGAGTCAAACAC CGTCTATCATCGGCAGAGTACCCCCAGTCTAATGGCAGAGCAGAACTAGG GGTGAAAGCTGCAAAAAGAATTCTACTCGATAACTTATCACCAAATGGCA CAATCGACAACAACAAGGTTTCTCGAGCAATCTTACAATACAGAAATACT C

Coding sequence (CDS) from alignment at scaffold_90:110715..111765

>TCONS_00073371 ID=TCONS_00073371|Name=TCONS_00073371|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_90:110715..111765 (Clytia hemisphaerica)
ATGATCACCGGTGATTATTTCATTGTCGCAAGTCACCACTATCTGACGAT
CATTGATAAATATAGCGGCTGGAACTGCCTATATCATTTTGGACCCAATG
AAGCCACCAGTGCCACCCTGATATCCACTTGTCGCACCCTCTTCACTAAC
TACGGCGTTCCAGAAGAATTCAGTTCAGATGGAGGACCTCAGTTAACCGC
AAACAAGTTCAAACAATTCTTATCAGATTGGGGAGTCAAACACCGTCTAT
CATCGGCAGAGTACCCCCAGTCTAATGGCAGAGCAGAACTAGGGGTGAAA
GCTGCAAAAAGAATTCTACTCGATAACTTATCACCAAATGGCACAATCGA
CAACAACAAGGTTTCTCGAGCAATCTTACAATACAGAAATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045525XLOC_045525Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073371-proteinTCONS_00073371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073371-exon-scaffold_90-1491911889:110715..111765TCONS_00073371-exon-scaffold_90-1491911889:110715..111765Clytia hemisphaericaexon
TCONS_00073371-exon-scaffold_90-1510915933:110715..111765TCONS_00073371-exon-scaffold_90-1510915933:110715..111765Clytia hemisphaericaexon
TCONS_00073371-exon-scaffold_90-1575043694:110715..111765TCONS_00073371-exon-scaffold_90-1575043694:110715..111765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:110715..111765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20501 0.832245 2.13679 1.86438 3.18762 2.32101 2.91226 2.68009 1.10746 1.53275 0.774989 1.25677 0.453138 0.563228 0.465282 0.302238 0.566967 0.503965 0.682671 0.24607 0.499721 0.93357 0.144934 0.376967 0.410879 0.741987 0.134745 0.159631 0.256408 0.158823
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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