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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073371 ID=TCONS_00073371|Name=TCONS_00073371|organism=Clytia hemisphaerica|type=transcript|length=1051bp
GAGTATTTCTGTATTGTAAGATTGCTCGAGAAACCTTGTTGTTGTCGATT
GTGCCATTTGGTGATAAGTTATCGAGTAGAATTCTTTTTGCAGCTTTCAC
CCCTAGTTCTGCTCTGCCATTAGACTGGGGGTACTCTGCCGATGATAGAC
GGTGTTTGACTCCCCAATCTGATAAGAATTGTTTGAACTTGTTTGCGGTT
AACTGAGGTCCTCCATCTGAACTGAATTCTTCTGGAACGCCGTAGTTAGT
GAAGAGGGTGCGACAAGTGGATATCAGGGTGGCACTGGTGGCTTCATTGG
GTCCAAAATGATATAGGCAGTTCCAGCCGCTATATTTATCAATGATCGTC
AGATAGTGGTGACTTGCGACAATGAAATAATCACCGGTGATCATTTGGAA
TGGATATTGCGGTGGAGGGCTTTGGATGATCGGTTCCTTGGGCTGACTGG
GTGAGTGACTGATACAAGTTTTACAGCAATCACGGATTCGGTGGATATCT
TTGTTGATTCCCGGCCAATAGATACAATCGTTGACTCAAGCCTGCATACC
TGTGCATCCTTGATGGGCGGAATGAAGCGCTTGAAGGATCTGATGACGGA
GGTTCCTGGGTATCACGAGGGGTTTGTCTAACATTATGAGACCATTCCAA
TGCGATAGACGATTTCTAACTTCCCAGAATGGTCGTAGATTGGCAGGTAG
GNNNNNNCTTGGGTATCACGAGGCGTTTGTCTAACATTATGAGACCATTC
CAATGCGATAGACGATTTCTAACTTCCCAGAATGGTCGTAGATTGGCAGG
TAGGCTTTCACGGGCTGTTGGGAAGCCGTCCTGGATGGTTTGTAGCAGTG
ATGAGTAGTCAGTATCAGTTGATCCATGTTGACGTATCTGATCGAGAGTA
AGAAGTTGAACATGGTCAGTTGTTTGGCACATATTGATGGCGGAAATGGC
ATTGACTTCTGAATCGATGTCTGGATTTCGATCATCTTCTGTCATGGTAG
CACTAGTTGTCGTTTGACGCAATACTCTCATGGTCTCCTTGTATGAGTCG
A Run BLAST on NCBI protein sequence of TCONS_00073371-protein >TCONS_00073371-protein ID=TCONS_00073371-protein|Name=TCONS_00073371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MITGDYFIVASHHYLTIIDKYSGWNCLYHFGPNEATSATLISTCRTLFTN
YGVPEEFSSDGGPQLTANKFKQFLSDWGVKHRLSSAEYPQSNGRAELGVK
AAKRILLDNLSPNGTIDNNKVSRAILQYRNT Run BLAST on NCBI transcript from alignment at scaffold_90:110715..111765 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073371 ID=TCONS_00073371|Name=TCONS_00073371|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at scaffold_90:110715..111765 (Clytia hemisphaerica)
TCGACTCATACAAGGAGACCATGAGAGTATTGCGTCAAACGACAACTAGT
GCTACCATGACAGAAGATGATCGAAATCCAGACATCGATTCAGAAGTCAA
TGCCATTTCCGCCATCAATATGTGCCAAACAACTGACCATGTTCAACTTC
TTACTCTCGATCAGATACGTCAACATGGATCAACTGATACTGACTACTCA
TCACTGCTACAAACCATCCAGGACGGCTTCCCAACAGCCCGTGAAAGCCT
ACCTGCCAATCTACGACCATTCTGGGAAGTTAGAAATCGTCTATCGCATT
GGAATGGTCTCATAATGTTAGACAAACGCCTCGTGATACCCAAGNNNNNN
CCTACCTGCCAATCTACGACCATTCTGGGAAGTTAGAAATCGTCTATCGC
ATTGGAATGGTCTCATAATGTTAGACAAACCCCTCGTGATACCCAGGAAC
CTCCGTCATCAGATCCTTCAAGCGCTTCATTCCGCCCATCAAGGATGCAC
AGGTATGCAGGCTTGAGTCAACGATTGTATCTATTGGCCGGGAATCAACA
AAGATATCCACCGAATCCGTGATTGCTGTAAAACTTGTATCAGTCACTCA
CCCAGTCAGCCCAAGGAACCGATCATCCAAAGCCCTCCACCGCAATATCC
ATTCCAAATGATCACCGGTGATTATTTCATTGTCGCAAGTCACCACTATC
TGACGATCATTGATAAATATAGCGGCTGGAACTGCCTATATCATTTTGGA
CCCAATGAAGCCACCAGTGCCACCCTGATATCCACTTGTCGCACCCTCTT
CACTAACTACGGCGTTCCAGAAGAATTCAGTTCAGATGGAGGACCTCAGT
TAACCGCAAACAAGTTCAAACAATTCTTATCAGATTGGGGAGTCAAACAC
CGTCTATCATCGGCAGAGTACCCCCAGTCTAATGGCAGAGCAGAACTAGG
GGTGAAAGCTGCAAAAAGAATTCTACTCGATAACTTATCACCAAATGGCA
CAATCGACAACAACAAGGTTTCTCGAGCAATCTTACAATACAGAAATACT
C Coding sequence (CDS) from alignment at scaffold_90:110715..111765 >TCONS_00073371 ID=TCONS_00073371|Name=TCONS_00073371|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_90:110715..111765 (Clytia hemisphaerica)
ATGATCACCGGTGATTATTTCATTGTCGCAAGTCACCACTATCTGACGAT
CATTGATAAATATAGCGGCTGGAACTGCCTATATCATTTTGGACCCAATG
AAGCCACCAGTGCCACCCTGATATCCACTTGTCGCACCCTCTTCACTAAC
TACGGCGTTCCAGAAGAATTCAGTTCAGATGGAGGACCTCAGTTAACCGC
AAACAAGTTCAAACAATTCTTATCAGATTGGGGAGTCAAACACCGTCTAT
CATCGGCAGAGTACCCCCAGTCTAATGGCAGAGCAGAACTAGGGGTGAAA
GCTGCAAAAAGAATTCTACTCGATAACTTATCACCAAATGGCACAATCGA
CAACAACAAGGTTTCTCGAGCAATCTTACAATACAGAAATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073371-exon-scaffold_90-1491911889:110715..111765 | TCONS_00073371-exon-scaffold_90-1491911889:110715..111765 | Clytia hemisphaerica | exon |
| TCONS_00073371-exon-scaffold_90-1510915933:110715..111765 | TCONS_00073371-exon-scaffold_90-1510915933:110715..111765 | Clytia hemisphaerica | exon |
| TCONS_00073371-exon-scaffold_90-1575043694:110715..111765 | TCONS_00073371-exon-scaffold_90-1575043694:110715..111765 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_90 | supercontig | scaffold_90:110715..111765 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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