TCONS_00073364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073364
Unique NameTCONS_00073364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073364 ID=TCONS_00073364|Name=TCONS_00073364|organism=Clytia hemisphaerica|type=transcript|length=1644bp
TTGCAATCTACTTATAAATATTGTGAAAGTAAAAATCACTCTTCATTTCG
ATTTGTTTAATACATGAATATGTCTGCGAAGATAttaaaaagatgttcaa
attAGATTTGTGAGTGTTTCCAGTTTGAAAGTTGATCACTGACCTCACTG
TATTACTAAGTGTGGAATTATCAAACATGTCAGAGGACGATACCACGCAA
TCTTCTGGTGACTTACCAACAATTGAAGTGACCACTGAAGAATATGATAT
TATTGAAGTGTCAGAGCAAGTAGAACTTTCTGAACCAATTGTTATTGAAG
ATGATATAGAAGTTGACGTAGAGGTTATTGAACAAGTTGATTCAAAAGAT
TTTAGCCCTGTTACTGTTGTAATTGCACCTCCTGAGAATGAAATTGATGC
ATCTGACTCTCCTCAGGGAGAGAAAGATGCTCACGAAGCCGAGGAAGAGG
AAGATGttggagaaaaagaaaatgagaaagaagaagaggTTGAAATGCAA
GAGGAAGAAGCTGTAAAAGCGGAGCCTAatattgaagaagaagaagaaga
agaagaaactgaTAACGGGGAAAATGTAAATGATGAAACAACTGGAATCG
ACGATGTGGATATCGATGTGGAGGATGAAGATGATGATCATATCCAACCA
TCTGCACCATCCATCAGTCTATTGGTGGACCATTCAGTGGATACCATCGT
GGAAGATAAAGAAAGTGAAGATGAACAGGAAGAAGTTGCAAAAGAAGGAA
AAACCGAAGACATTGAAGATGGAGAAGACAGAAAAGAGATTACTGTTGCT
GAGGAAACTCCAAAAGAAGAAGAATCTGGCAAAGATTCTCATGAAGATTC
AAAACAACTTGAAGGCTCTGAAAATGTGTCAGATCTTGTTCCAGTCGGAA
TATCTAGTCCATGTCCTTGTGATGAGGACGACAAAAATGTCGAGGAAGTC
GAAGATTCTATAGATGGTGAATGCAGCTATGGCAAAATTCGTCTCTTATT
CTTCCGCGAACCAGAAGACGATATTATGAATGTGAAGGTCTTTCGTGTTG
ATCAAATGCCATCTACTACAGAAGGTGGTTCAAAAGATGTCAGCATCCAT
CTCTGCTTAAAACCAGCTTCCAAGCAACGATATAAAACAAAGATGAAATC
AACATCTAAAGCAAGATTTGACGATACGtatgaatttcgaaaaatcaacA
ATGAAGCAATTGAATCTTCAACATTGAGGATAAGAGCTTATGGTAAATGT
AAGAAGATCATTGGTGAAGCTCATATTCCTTTATCAATGGTCAAAGATTT
TCAATATCAAGAAGTTTGGTATTACTTCTCACCATTTGACAAAAAGAAAT
CCAAGACGAAGAAAAACAGTGAAGCTCCAGCAGTAGGAAAATGGTATTTT
GCAAAGAATGAATTACTTTAGTTATTACCCTATCTAAATCATACAAACAA
GACAACGATCCAACGATTTTGGGGAGGTGTAAAGATCCCACACTGATGGA
TCAGAGTACCTTCAATCATTCTCATACCATTTTGACTTTGGGTCAACCCT
GTCATATATTTTGATATATATTGAAGTAGTGCATTTATTCATCTATAAta
ataaaatactaaaaattcaTACCAGGAAAAGAATTGCCTTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_90:257554..261632-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073364 ID=TCONS_00073364|Name=TCONS_00073364|organism=Clytia hemisphaerica|type=transcript|length=4079bp|location=Sequence derived from alignment at scaffold_90:257554..261632- (Clytia hemisphaerica)
TTGCAATCTACTTATAAATATTGTGAAAGTAAAAATCACTCTTCATTTCG
ATTTGTTTAATACATGAATATGTCTGCGAAGATATTAAAAAGATGTTCAA
ATTAGATTTGTGAGTGTTTCCAGTTTGAAAGTTGATCACTGACCTCACTG
TATTACTAAGTGTGGAATTATCAAACATGTCAGAGGACGATACCACGCAA
TCTTCTGGTGACTTACCAACAATTGAAGTGACCACTGAAGAATATGATAT
TATTGAAGTGTCAGAGCAAGTAGAACTTTCTGAACCAATTGTTATTGAAG
ATGATATAGAAGTTGACGTAGAGGTTATTGAACAAGTTGATTCAAAAGAT
TTTAGCCCTGTTACTGTTGTAATTGCACCTCCTGAGAATGAAATTGATGC
ATCTGACTCTCCTCAGGGAGAGAAAGATGCTCACGAAGCCGAGGAAGAGG
AAGATGTTGGAGAAAAAGAAAATGAGAAAGAAGAAGAGGTTGAAATGCAA
GAGGAAGAAGCTGTAAAAGCGGAGCCTAATATTGAAGAAGAAGAAGAAGA
AGAAGAAACTGATAACGGGGAAAATGTAAATGATGAAACAACTGGAATCG
ACGATGTGGATATCGATGTGGAGGATGAAGATGATGATCATATCCAACCA
TCTGCACCATCCATCAGTCTATTGGTGGACCATTCAGTGGATACCATCGT
GGAAGATAAAGAAAGTGAAGATGAACAGGAAGAAGTTGCAAAAGAAGGAA
AAACCGAAGACATTGAAGATGGAGAAGACAGAAAAGAGATTACTGTTGCT
GAGGAAACTCCAAAAGAAGAAGAATCTGGCAAAGATTCTCATGAAGATTC
AAAACAACTTGAAGGCTCTGAAAATGTGTCAGATCTTGTTCCAGTCGGAA
TATCTAGTCCATGTCCTTGTGATGAGGACGACAAAAATGTCGAGGAAGTC
GAAGATTCTATAGATGGTGAATGCAGCTATGGCAAAATTCGTCTCTTATT
CTTCCGCGAACCAGAAGACGATATTATGAATGTGAAGGTCTTTCGTGTTG
ATCAAATGCCATCTACTACAGAAGGTGGTTCAAAAGATGTCAGCATCCAT
CTCTGCTTAAAACCAGCTTCCAAGCAACGATATAAAACAAAGATGAAATC
AACATCTAAAGCAAGATTTGACGATACGTATGAATTTCGAAAAATCAACA
ATGAAGCAATTGAATCTTCAACATTGAGGATAAGAGCTTATGGTAAATGT
AAGAAGATCATTGGTGAAGCTCATATTCCTTTATCAATGGTCAAAGATTT
TCAATATCAAGAAGTTTGGTATTACTTCTCACCATTTGACAAAAAGGTAT
GTTTGATTTTAACACGTACATCTCTCTCTCTTTCTCTTTCTTTTTCGATG
GCCAAAATACTAAAAACAAGTTAAAACACCCAGTTTCTTAGGGAATTGCA
ACTCAAAATCTCAAAAAGCTACAAACATCCGAAGGCCTAAAAAATCTTGG
ATGTTCTTATAATAAAGGGCTAGATTAGGGCCCCTATCCAATTATTAGCG
AATGTGAAAATTAGTGAAATGAAAGCTGTCTAAACCCACTACATGATTTG
TGGCCTGTGGTTTTGTAAAGGTCTGTGATTTCCACTATGTATAGTAGAGA
TGGTCACGCGGTAATTGTAATCCTCCTATCATTATATAATTTTGCAATAG
TGGATTGATGATAGTNTGAAGATTCAAAACAACTTGAAGGCTCTGAAAAT
GTGTCAGATCTTGTTCCAGACGGAATATCTAGTCCATGTCCTTGTGATGA
GGACGACAAAAATGTCGAGGAAGTCGAAGATTCTATAGATGGTGAATGCA
GCTATGGCAAAATTCGTCTCTTATTCTTCCGCGAACCAGAAGACGATATT
ATGAATGTGAAGGTCTTTCGTGTTGATCAAATGCCATCTACTACAGAAGG
TGGTTCAAAAGATGTCAGCATCCATCTCTGCTTAAAACCAGCTTCCAAGC
AACGATATAAAACAAAGATGAAATCAACATCTAAAGCAAGATTTGACGAT
ACGTATGAATTTCGAAAAATCAACAATGAAGCAATTGAATCTTCAACATT
GAGGATAAGAGCTTATGGTAAATGTAAGAAGATCATTGGTGAAGCTCATA
TTCCTTTATCAATGGTCAAAGATTTTCAATATCAAGAAGTTTGGTATTAC
TTCTCACCATTTGACAAAAAGGTATGTTTGATTTTAACACGTACATCTCT
CTCTCTTTCTCTTTCTTTTTCGATGGCCAAAATACTAAAAACAAGTTAAA
ACACCCAGTTTCTTAGGGAATTGCAACTCAAAATCTCAAAAAGCTACAAA
CATCCGAAGGCCTAAAAAATCTTGGATGTTCTTATAATAAAGGGCTAGAT
TAGGGCCCCTATCCAATTATTAGCGAATGTGAAAATTAGTGAAATGAAAG
CTGTCTAAACCCACTACATGATTTGTGGCCTGTGGTTTTGTAAAGGTCTG
TGATTTCCACTATGTATAGTAGAGATGGTCACGCGGTAATTGTAATCCTC
CTATCATTATATAATTTTGCAATAGTGGATTGATGATAGTATACTTGTAC
GGTTTTCCAACTGTCTGAGACCCATATACAAAGTCATTATTTATGGTTAA
AACTGGATAATCTAGGAGTTAGGGCCTACTTTTCTTTGACATTGTTGAGG
CTTTCATCTATATATTTACTAATCCACCAAAATATTTTCTCGTTTTAGAA
ATCCAAGACGAAGAAAAACAGTGAAGCTCCAGCAGTAGGAAAATGGTATT
TTGCAAAGAATGAATTACTTTAGTTATTACCCTATCTAAATCATACAAAC
AAGACAACGATCCAACGATTTTGGGGAGGTGTAAAGATCCCACACTGATG
GATCAGAGTACCTTCAATCATTCTCATACCATTTTGACTTTGGGTCAACC
CTGTCATATATTTTGATATATATTGAAGTAGTGCATTTATTCATCTATAA
TAATAAAATACTAAAAATTCATACCAGGAAAAGAATTGCCTTAAAAATCT
TTGTTGTGTTGTGTTTCTCTCGACTCTCTTTTAAAGAACAGTAAGAAGGA
AAAGGCAAAACCTTCTACACAAAACTTTAGGGTTCTTACTTTTCCCATCT
TAAAACACCCCAATGTCAATGTTGGTGCGTCTGACAGTGTGGAGTACCAA
GTTGGGTGAAACTTTTTAAATCTCTGAAAATCACTGGGGTGCAAGATTGA
GTGGGTTTGTAAATTCTCCTTCATTTTTACTTGGATTAGAAAAATTCTAA
GAGCTTTTTGCATGAGTATATAAGTATATCATTTGGATTTGATTTGATCA
AATGAATCAATTATTAAGGGGCTATTGAGCAGGGAGAGTATNGCCTAAAA
AATCTTGGATGTTCTTATAATAAAGGGCTAGATTAGGGCCCCTATCCAAT
TATTAGCGAATGTGAAAATTAGTGAAATGAAAGCTGTCTAAACCCACTAC
ATGATTTGTGGCCTGTGGTTTTGTAAAGGTCTGTGATTTCCACTATGTAT
AGTAGAGATGGTCACACGGTAATTGTAATCCTCCTATCATTATATAATTT
TGCAATAGTGGATTGATGATAGTATACTTGTACGGTTTTCCAACTGTCTG
AGACCCATATACAAAGTCATTATTTATGGTTAAAACTGGATAATCTAGGA
GTTAGGGCCTACTTTTCTTTGACATTGTTGAGGCTTTCATCTATATATTT
ACTAATCCACCAAAATATTTTCTCGTTTTAGAAATCCAAGACGAAGAAAA
ACAGTGAAGCTCCAGCAGTAGGAAAATGGTATTTTGCAAAGAATGAATTA
CTTTAGTTATTACCCTATCTAAATCATACAAACAAGACAACGATCCAACG
ATTTTGGGGAGGTGTAAAGATCCCACACTGATGGATCAGAGTACCTTCAA
TCATTCTCATACCATTTTGACTTTGGGTCAACCCTGTCATATATTTTGAT
ATATATTGAAGTAGTGCATTTATTCATCTATAATAATAAAATACTAAAAA
TTCATACCAGGAAAAGAATTGCCTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045519XLOC_045519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073364-exon-scaffold_90-1575043694:260287..261632TCONS_00073364-exon-scaffold_90-1575043694:260287..261632Clytia hemisphaericaexon
TCONS_00073364-exon-scaffold_90-1575043694:257554..257851TCONS_00073364-exon-scaffold_90-1575043694:257554..257851Clytia hemisphaericaexon
TCONS_00073364-exon-scaffold_90-1510915933:260287..261632TCONS_00073364-exon-scaffold_90-1510915933:260287..261632Clytia hemisphaericaexon
TCONS_00073364-exon-scaffold_90-1510915933:257554..257851TCONS_00073364-exon-scaffold_90-1510915933:257554..257851Clytia hemisphaericaexon
TCONS_00073364-exon-scaffold_90-1491911889:260287..261632TCONS_00073364-exon-scaffold_90-1491911889:260287..261632Clytia hemisphaericaexon
TCONS_00073364-exon-scaffold_90-1491911889:257554..257851TCONS_00073364-exon-scaffold_90-1491911889:257554..257851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:257554..261632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0123616	0.0602725	0	0	2.55055	1.83106	0.0476783	0.148786	0.19792	0.193545	0.200383	0.115258	9.06809	7.50482	0.975685	0.677952	0.46399	0.646781	17.7661	42.971	1.66131	1.08433	1.31814	1.52053	2.21644	4.24052	0.135601	0.162807	0.0137204	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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