TCONS_00073354 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00073354
Unique Name	TCONS_00073354
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3099

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_90:75062..81843+

transcript sequence

>TCONS_00073354 ID=TCONS_00073354|Name=TCONS_00073354|organism=Clytia hemisphaerica|type=transcript|length=3099bp
gttttgtttttttgatatTGTAAATAAGAGAGAATAATGTAACAACGTAA
CGAGTAGGATTTCTTCATAAACAAGAAATGTCTGGAAGCTTATCGAATAA
AAACTTTATACTATTCCAAGCTTTGCATAAGGTTATGCAAGATGACTCGA
TTACAATGGAGAAAGATTCTAAAGTGAATAGCTACTACCATAACACACAA
GGCAATGTTCATGACAATTACGCGAAACGCCCCACACCAACCAAAGAACG
AAATATCATCGACGAACCGTTTAAACCCAGTGAAAGTAACCAcaaatatc
aaaacaataataacaacaataacATTAATCGATTTTTCGATCGTCCAGCT
CCTCATCTGGACCCACTTAAAGGTCGTGAATATGCGCATCCCTCGCATGT
CTACGAAAATAAACGTCGTGAATTAGACTCGAAAGTCTTCGATACTTCAA
GGCATCCTGCTTTATCGTCAACTAGAGATCATTCACCTCATCGCTACGAT
CCACGATACCCTACATCAAGAGACGAGCTTAATAATAGACTATCGGAACC
ACCTCATTTAAGAGTTGAAACTGCGGAAGGATTAGCTAGCGGTTCAGCTC
TTTCTCCAAACAGAAAACGTCCACGACCTGGACCTATTATAATACCTCCG
GCTGTTAACAACCGGTCAATACCAACCACCATCTCTCCTTCTCGTCATTT
CGCTGCGTTTCCGAAAGGAATTTACACTCCACCTGCCATGTTGAGTCCGC
GAAGTATTTTCTTTAATCCACCCTTCAATGCACCGAGACACCATCCCAAC
GCCCCACATACGCCAGGGCGAATGCAGTTATCCAAAAGGCGTTCTTCGAG
TTTCAACGAACCACAACCTCTCAACACATCTCAACAACAACTCCAACTAA
AACAACTCGAACAACAACAAATTCAACAACAGCAGCAATCTGTTGTACAG
CAAACGCCGAAACAAACAACACCTGTCTCTGCTGAACCTTCTACTGTGAC
ACCCACAAACGAAGAGGAAATAAACGTTACAACTGTCGCTTCTGACCCAA
CTGAACCGAAAATCAATGTTGGGCCAGAGTTTCAAGCAGTTCTTCCTCAT
GTTTTAAATCGAACGGAAGCACAGAAAGACAGTCACCGTGCATCTCTGAT
GTGGTCACCTCTCAAAGAAGATGaacaaaagcaaaaagaagTTGAAGCTT
ACTTAGACATGGCTTGTTCTCTCGTCTTATACGGTGGATCGAACAATAAA
GAATATGCTTTACATATCTTACAAAGGACACGTGGTAATGTCAAGGAAGC
TGTAAGGCTGCTTCTTTCACGGAGACATATTCTACGAGCAGACGATCCCA
ATGCAGATTATCATTACTCCGGATCAGTACGCTGGACGGCCAAAGAAAGG
CTTGCATTCAGGCAAGCTTACAGATCGAAAGGCAAAATCTTCATGGGTAT
TCAAAAAGAGGTTGAAACGAAGTCTGTACAACAATGCGTGGAGTTCTATT
ACCTTTGGAAAGCAATGCATCCTGAGAGCTTTCGAGCTCGCACGCGAATG
GTTGAAGTGGAATCAGAGCAGGACGACGAAGAAGTTCCTCCAACTCCAAC
AGCAGCTGTTGCACCGCTATCCACTCTTCGTGAACCTGTATTCGAATGTG
ATTATCCTGAATGTCGGGCACGCTTTGTTTCCAGACAAGCGCTCAATGGT
CATATTCGAGTTCATGGTGGAAGTTTTACAAAACCATCGGATACGCGACG
AGCAAAAACGAAAGCAGCAGATGGCTCCTCACCTCGTCCTCCCGGTGATG
GCTTACCAAGTCCGCCCAAGAAAAAGAAAGTGGCGGCGCCCGACCCCTCC
ATTATCATCACGAACACGAGTGAAGGCCCTCAACAGCAGTTCCAATGTAA
AGTGTGTGGAAGGGTGTTCAGCAAAGTGAAAAGTCGATCAGCGCACATGA
AAACTCACGTTAAGAGGGACGAGAACAATAAACCTATCAAATCAGCGAAA
GCCACTGCAAAGCAAAAGCAAaaacaactacaacaacaacaacgacagca
gcagcagcagcagcagCAACTTCAACAACAATTTGGTGAACATTCAATGC
CGCCCTACCCGCCGCAACCGACACACCCTGGTCCACCCCAACCACCCTCA
AATCTAAATCCAATGACTGTTTTTGCACATGCGTAAAGTTTATTTGTtat
ctttatttaattttcttttgttttttttaatatccatattaataattttt
ttattataaacatagaaaaaataatttaaattattatatcttatatcttt
ataattttttacacCACTCTTTTCATGAAAAGATGCTTTTTATCCAACTT
TAGTAGTCCCAAGATAAACCAAGCAAATAAATTAAAAcaatgctaaaatt
ttcaatgaaagaaaattttttaatagaCAATTATTTACAGTagcaaataa
ttttaaattatttggaTTTTATTGATCacttttttggttgtttttgtata
ttattttgaaatctatttgttttacttttttttggtttttctatcCACTT
ACGACAACtcgtttaatattttaataattattattttaaagggAAAAAGC
TACGTGATATTATATTGTTAATTTTTGTGCTGCGCTTTTATTATTGTAAA
TTTTCGTAAATGAATCTATAGGAGTTTTTTTCTCTCAAGCAGCAGTATTT
GTTTTAACAGTAGTTAGTTTGCAACATTCCTATAAGAGTGAAACCAAGAA
AGTCATTTTTCATACCTCACCAAAGTcactaaaattttcttttcagtgTT
TTACAAGCCGTTTTGTGATAAGTAATTGAGATGAGCAAATTTATTCGTGA
CTAACGCTAAACAAACTAAATATTATGTTTTTGGTCTTTGTGAATGAACC
ATTCGTCCGGCATCGCGCCTTTAAGGAAACATAAATGCTTAGTTTTTTGT
CAGTGAATGTtatggaaaaaagataatagatACATTTTTCGCGACACTTA
TTGTATTATATAcattattaaaaattattttacgaGTAAAAATATAGTAA
TAATTATTAATTAATGACGATACTCTTAAACTGTCATCTTGGTTCATCT

Run BLAST on NCBI

transcript from alignment at scaffold_90:75062..81843+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00073354 ID=TCONS_00073354|Name=TCONS_00073354|organism=Clytia hemisphaerica|type=transcript|length=6782bp|location=Sequence derived from alignment at scaffold_90:75062..81843+ (Clytia hemisphaerica)
gttttgtttttttgatatTGTAAATAAGAGAGAATAATGTAACAACGTAA
CGAGTAGGATTTCTTCATAAACAAGAAATGTCTGGAAGCTTATCGAATAA
AAACTTTATACTATTCCAAGCTTTGCATAAGGTACTGTAACTTTCAGTTG
CGTGTCAATTCTTGCATTTTCAATGAATTGAGATCTTTGGCAATTTaata
cttcatactgtttttaaaatactttcattAACTTTCTCTCTGTCAGATAC
TTCTAGTCTTTGTTTAGAATTCCACTGAAGCTTTTTAACAGTTGAAATTG
TCATAGTGTGATGATGAAAACATTTAAGAAGCTTTGCTCCTGGTCGATTT
CTTTGGAACTTCCTTAATGTGTTTATACAGTTCTTGGTTTCTCTTTCTGG
AAGCAAAACATGGTTGGAAGTCGTCAGTCAAAACGTTTAAATTTTCTGTA
CGTTTTAGGTTATGCAAGATGACTCGATTACAATGGAGAAAGATTCTAAA
GTGAATAGCTACTACCATAACACACAAGGCAATGTTCATGACAATTACGC
GAAACGCCCCACACCAACCAAAGAACGAAATATCATCGACGAACCGTTTA
AACCCAGTGAAAGTAACCAcaaatatcaaaacaataataacaacaataac
ATTAATCGATTTTTCGATCGTCCAGCTCCTCATCTGGACCCACTTAAAGG
TCGTGAATATGCGCATCCCTCGCATGTCTACGAAAATAAACGTCGTGAAT
TAGACTCGAAAGTCTTCGATACTTCAAGGCATCCTGCTTTATCGTCAACT
AGAGATCATTCACCTCATCGCTACGATCCACGATACCCTACATCAAGAGA
CGAGCTTAATAATAGACTATCGGAACCACCTCATTTAAGAGTTGAAACTG
CGGAAGGATTAGCTAGCGGTTCAGCTCTTTCTCCAAACAGAAAACGTCCA
CGACCTGGACCTATTATAATACCTCCGGCTGTTAACAACCGGTCAATACC
AACCACCATCTCTCCTTCTCGTCATTTCGCTGCGTTTCCGAAAGGAATTT
ACACTCCACCTGCCATGTTGAGTCCGCGAAGTATTTTCTTTAATCCACCC
TTCAATGCACCGAGACACCATCCCAACGCCCCACATACGCCAGGGCGAAT
GCAGTTATCCAAAAGGCGTTCTTGTAAGTGTCTGATTACATATTTTTAGT
TCCCctttttttcttgcttggaAACGAAGCTTTTTTCCTTCCCTGGTTGA
TTGTCGCGTTGCAAAAATTACTCAAACATACGTGCAGGAAATGGACGATT
TATACTATGATTATTTAGTCATTTGAGGTCGCCGCTtggattttaaaatc
tttaaaaggaaCCTCAACTTCCGcttttgcattttctttttctggctttt
ctagcatttttttcTTGCATGATCAGCTTACGGATAGAAAATGTTTtgac
gaaagtgaaagtgcacGAGTTCCGAGCTCATTAGGATGTAAAAAAGCGTA
GAAATATCCTTGCAAACACGGGCCATTTATTCAAGGCACTCACTTTATTC
GGGATTGAATATAGGTGATACATATTACAACGAGCAATGATTTACTTCAT
TTTCAGCGAGTTTCAACGAACCACAACCTCTCAACACATCTCAACAACAA
CTCCAACTAAAACAACTCGAACAACAACAAATTCAACAACAGCAGCAATC
TGTTGTACAGCAAACGCCGAAACAAACAACACCTGTCTCTGCTGAACCTT
CTACTGTGACACCCACAAACGAAGAGGAAATAAACGTTACAACTGTCGCT
TCTGACCCAACTGAACCGTAAGTATCTTACTTTTGTTGGTATCCATGGTA
TTTGTTGGTATTAatgttttcccttttttccctCTCTGAATAATATGAAA
ATGATCTCAGGGCTTTATCAAAGTAAATGgtgttaaaacattttttttcg
atcgAGAGGTCacgtagactagagtctacttctggctgaactttgctttt
tgataattttttcatgacgctgagtccagtcaagtagactaggagcattt
ggcgaggtcgccattttgaaaaaaaaaattaaaaatccaaataacaataa
aactacttggagttgaaggatataatcaaaaataagaaacaaacacgatt
aacagatttgtaatcccttattctcaaataaaaatattgcttcatactgt
ttttaccttccaaaaacaactaaaatctggcggactgttttacagtccgc
ctaggcaaaagcatattaccatatactaccgggccacttatcagcaccaa
aaagtccataaaaaagctctaagtggaccccgggctagagGTCACGGTGA
TAAATTCAAATTGGACTTTCGTCTTCTAGTTTAGCCTGTACCACTCCGCC
CACGGGCgttatttatattttgaaaaaacttgccgTTATCTTTTCGgtca
gcgaagaagagtttggtacaggctactTCTAGTTGTGCCAAGCTAGCTTC
ATGTAATTTAACACTGTGGAATTTAATATACTATAAGGAGAATTCAATTA
TATGTATCCTGTGTCAACATGACCTGGATACAAGAATTTCAATAATGTTG
TTATTTTGTATGGGGATGGAATTCGTGTATAATATCTTTCACACAGGCCA
ATAGTCAGGTTAAGTTATTTGTCTCACTTTTCATGATTGGTCTTAATTAC
TGAACAGTTATGTTATCAAACTAGCTTATGTCGCTTTCTACAGGAAAATC
AATGTTGGGCCAGAGTTTCAAGCAGTTCTTCCTCATGTTTGTAAGTATAT
TGCTAGTTTGCCTGAAATTTCAGTATTTGATCAAATGATACAACTCCCTC
TTTAACTTAAAAGCTCATATATACTCACATTGGGTAACTAACTTTGATTT
AACCTCGCATATCGCAGGCTCCAAAGAAAATAGCTTTTAACTGTCTAAGT
GTTGAATGCCCCTTGACTCATAAAAGTCACCATTGGCAATATAGATGACG
AGGATGTGATTTTTTGATAGCTAAGAATGACATTATCGTATACCTTTAAT
CGATTTTCTTGTGTCCTATGTTTAGTAAATCGAACGGAAGCACAGAAAGA
CAGTCACCGTGCATCTCTGATGTGGTCACCTCTCAAAGAAGATGaacaaa
agcaaaaagaagGTAAGATTTCTTTTGGTCAACTTGATGCAGGCTGTTGA
ACCGATTTATTTcgaccaacgatgtaaaaataatagataaccaacttgct
tgtggtacctttatcttttgaaaaaaaatccaaaatttgcagtaaataac
aattcaaatattctatcaattcagtggatgtcaaaaagtgtgtcaaaatc
tagctaaaagcattacacgcactgcacacagagctttttaatagagtgct
catttcaataggaaaacaatggttgttctcttgggagaagtgccttctag
aggtagttggttatctattatttttacatcgttgttTCGACTAAATCTCA
CTTTGGTTTCGCATAATAATTAGTCAATTTTTCTCCACAAAATACCTGAT
TTGAAACAAATCTGAAGAAGACCAATAGACCAAAAATTTGATGGCTGTTA
ACTTAAAAATGTTTGACCCAAAATATCATGCTTGTTTCTTTTCGTTTCAG
TTGAAGCTTACTTAGACATGGCTTGTTCTCTCGTCTTATACGGTGGATCG
AACAATAAAGAATATGCTTTACATATCTTACAAAGGACACGTGGTAATGT
CAAGGTAATAATGACATTTTCCAAACCCCTGAAGGAAGAATGAAACGTAT
TCCATGAGCTTCTTAGTGTCAGACTTTTTACTTTctattgaaaaagaaga
atggggaaaagcatttttttaataCTTCGGGGTTGTATAATAGTTATAGA
AGAATGCGTTaaagtttgagatttttttcaattttcaaagaaatcttttt
tgttacACTTGGAAATTcatgtattttttttattattttaaccCTTAGGA
AGCTGTAAGGCTGCTTCTTTCACGGAGACATATTCTACGAGCAGACGATC
CCAATGCAGATTATCATTACTCCGGATCAGTACGCTGGACGGCCAAAGAA
AGGCTTGCATTCAGGCAAGCTTACAGATCGAAAGGCAAAATCTTCATGGG
TATTCAAAAAGAGGTATGGATGAACGGCTTTATATCCAGAATATTTACTA
CTAAATCACGACAGGGTTTTGGTTTTTGAAATTATGACAGTGTTTTCAAG
ACGAAATATCTAGACACGTGAGCGTTCACTTACcctttctctgatttttt
attCAGGTTGAAACGAAGTCTGTACAACAATGCGTGGAGTTCTATTACCT
TTGGAAAGCAATGCATCCTGAGAGCTTTCGAGCTCGCACGCGAATGGTTG
AAGTGGAATCAGAGCAGGTATTATTTCCTTTGTAAATTCAAATCGTTTTT
TGAAAGCTGTTGTACACAAGACTTGCAAGGGAAGAGTTCTTATTGTTTGG
TCtaatttgctttttatatgCAAATACTTTCAAGAGGTATTTAGGTTTgt
ctttatctttttctttctcgactgattttatttttttgaggcATCCTAAA
TGTTTTACCTTTGTATGTTTTGTTGTCTAGGACGACGAAGAAGTTCCTCC
AACTCCAACAGCAGCTGTTGCACCGCTATCCACTCTTCGTGAACCTGTAT
TCGAATGTGATTATCCTGAATGTCGGGCACGCTTTGTTTCCAGACAAGCG
CTCAATGGTCATATTCGAGTTCATGGTGGAAGGTAAGACATAAAATTGAC
GACagtattataaaaagaaagccAGCTTTATTTCATTGGCATTTTTGCTT
GAATTTGAACCATTAGGAGAAATATGAGTAATTCGCTTAAATCAGAAATT
AGACTTGCTTACCTATTTCCCCTTGTACCTTGCGgatttcttttaattta
ttctTTACTTTTACAGTTTTACAAAACCATCGGATACGCGACGAGCAAAA
ACGAAAGCAGCAGATGGCTCCTCACCTCGTCCTCCCGGTGATGGCTTACC
AAGTCCGCCCAAGAAAAAGAAAGTGGCGGCGCCCGACCCCTCCATTATCA
TCACGAACACGAGTGAAGGCCCTCAACAGCAGTTCCAATGTAAAGTGTGT
GGAAGGTAAGAATATACTCGAGGAGTATCAAGATTCTCCATGGAGATGAT
TAATGTTTGTCCTACTTCTTTGACCAATAAGAAAGCGATTTTTCCTCATC
TTAAAAATTAACTTGAATGGGGGAGGTcattttcccgaaaattttttttt
gatactcTCAACTACAGTTGAACTAGAATCTGAGattgtctgtctgtctg
tccgtCTGTCCGCCAAAAACTTTAAGGTGACAGCCTGGAGTCTTctaaaa
tggtcggatttggctgaaatttggcacacttaagtgaatatctgggggta
ttattttttatttttcaaaattttggctgGGCACTAatcttttggtttgt
tttgctaCACTTGGgtctatgaataatttgaagctactgaagttgagccg
TTTGACTATGTGATATTTAaccaatttctttcttttctttatcaGGGTGT
TCAGCAAAGTGAAAAGTCGATCAGCGCACATGAAAACTCACGTTAAGAGG
GACGAGAACAATAAACCTATCAAATCAGCGAAAGCCACTGCAAAGCAAAA
GCAAaaacaactacaacaacaacaacgacagcagcagcagcagcagcagC
AACTTCAACAACAATTTGGTGAACATTCAATGCCGCCCTACCCGCCGCAA
CCGACACACCCTGGTCCACCCCAACCACCCTCAAATCTAAATCCAATGAC
TGTTTTTGCACATGCGTAAAGTTTATTTGTtatctttatttaattttctt
ttgttttttttaatatccatattaataatttttttattataaacatagaa
aaaataatttaaattattatatcttatatctttataattttttacacCAC
TCTTTTCATGAAAAGATGCTTTTTATCCAACTTTAGTAGTCCCAAGATAA
ACCAAGCAAATAAATTAAAAcaatgctaaaattttcaatgaaagaaaatt
ttttaatagaCAATTATTTACAGTagcaaataattttaaattatttggaT
TTTATTGATCacttttttggttgtttttgtatattattttgaaatctatt
tgttttacttttttttggtttttctatcCACTTACGACAACtcgtttaat
attttaataattattattttaaagggAAAAAGCTACGTGATATTATATTG
TTAATTTTTGTGCTGCGCTTTTATTATTGTAAATTTTCGTAAATGAATCT
ATAGGAGTTTTTTTCTCTCAAGCAGCAGTATTTGTTTTAACAGTAGTTAG
TTTGCAACATTCCTATAAGAGTGAAACCAAGAAAGTCATTTTTCATACCT
CACCAAAGTcactaaaattttcttttcagtgTTTTACAAGCCGTTTTGTG
ATAAGTAATTGAGATGAGCAAATTTATTCGTGACTAACGCTAAACAAACT
AAATATTATGTTTTTGGTCTTTGTGAATGAACCATTCGTCCGGCATCGCG
CCTTTAAGGAAACATAAATGCTTAGTTTTTTGTCAGTGAATGTtatggaa
aaaagataatagatACATTTTTCGCGACACTTATTGTATTATATAcatta
ttaaaaattattttacgaGTAAAAATATAGTAATAATTATTAATTAATGA
CGATACTCTTAAACTGTCATCTTGGTTCATCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045513	XLOC_045513	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_90	supercontig	scaffold_90:75062..81843 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.525714	0.424804	0.112138	0.157591	14.133	7.00198	7.56379	9.38577	13.6414	14.5666	7.10547	13.181	5.72882	3.29475	7.49217	8.01574	2.62707	3.57409	5.53561	3.23474	2.33397	2.16139	5.22119	4.76379	2.33607e-08	0	13.338	6.39759	6.76395	3.76452

Blast

[Close]

BLAST of TCONS_00073354 vs. Swiss-Prot (Human)
Match: TREF1 (Transcriptional-regulating factor 1 OS=Homo sapiens GN=TRERF1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.437e-34
Identity = 75/189 (39.68%), Postives = 114/189 (60.32%), Query Frame = 3

Query:  993 TVTPT-NEEEINVTTVASDPTEPKINVGPEFQAVLPHVLNRTEAQKDSHRASLMWSPLKEDEQK--QKEVEAYLDMACSLVLYGGSNNKEYALHILQRTRGNVKEAVRLLLSRRHILRADDPNADYHYSGSVRWTAKERLAFRQAYRSKGKIFMGIQKEVETKSVQQCVEFYYLWKAMHPESFRARTRM 1550
            TVTP   E+ ++V        EP+IN+G  FQA +P + + +   +D+H+A+L+W P  E E    Q+ VE  L++ CS  L GG  N E+ALH L   +G+V  A+ +LL R+ +     P A+YHY+GS +WT+ ER  F +A  +  K F+ +QK V++K+V QCVE+YY WK +     + RTR+
Sbjct:  765 TVTPGPGEQTVDV--------EPRINIGLRFQAEIPELQDISALAQDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRL 945

The following BLAST results are available for this feature:

BLAST of TCONS_00073354 vs. Swiss-Prot (Human)

BLAST of TCONS_00073354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TREF1	1.437e-34	39.68	Transcriptional-regulating factor 1 OS=Homo sapien...	[more]

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TCONS_00073354 (transcript) - C. hemisphaerica