Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073346
Unique NameTCONS_00073346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073346 ID=TCONS_00073346|Name=TCONS_00073346|organism=Clytia hemisphaerica|type=transcript|length=375bp
GCAATACTAAATTTGTCTGTGAGTTGATTCTTGATAAAAAGATTCAGTAT
TCTGTAAAAAGACAAGTTTTTTCCCATGTTCAACGAAAATTGACAAACTT
TCAGGGTTTAAAGAGGTAAGAGAAATCTGCCTTTTAATTATacaaatata
taaaaagaaagatCAGTTCTAGCTCTTTCCAACAGTGTATAAATATTGAT
AGGTTGTAAAGGATTTTCACTATGCCAGCTAGGCTCAAAGATTCCTCCTG
tcgaaaaggcaaaaaaaaattttagctcaaaaaaattgacgttgCCAATA
GAAAAGGCCAGTAGAAAATACTGAAGCCAGAAATGAATTATACAAATAAA
TCTTGTCAAAGAggatgaaaaatgc
Run BLAST on NCBI

transcript from alignment at scaffold_9:325988..326362

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073346 ID=TCONS_00073346|Name=TCONS_00073346|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at scaffold_9:325988..326362 (Clytia hemisphaerica)
gcatttttcatccTCTTTGACAAGATTTATTTGTATAATTCATTTCTGGC TTCAGTATTTTCTACTGGCCTTTTCTATTGGcaacgtcaatttttttgag ctaaaatttttttttgccttttcgaCAGGAGGAATCTTTGAGCCTAGCTG GCATAGTGAAAATCCTTTACAACCTATCAATATTTATACACTGTTGGAAA GAGCTAGAACTGatctttctttttatatatttgtATAATTAAAAGGCAGA TTTCTCTTACCTCTTTAAACCCTGAAAGTTTGTCAATTTTCGTTGAACAT GGGAAAAAACTTGTCTTTTTACAGAATACTGAATCTTTTTATCAAGAATC AACTCACAGACAAATTTAGTATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045510XLOC_045510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073346-exon-scaffold_9-1491911889:325988..326362TCONS_00073346-exon-scaffold_9-1491911889:325988..326362Clytia hemisphaericaexon
TCONS_00073346-exon-scaffold_9-1510915933:325988..326362TCONS_00073346-exon-scaffold_9-1510915933:325988..326362Clytia hemisphaericaexon
TCONS_00073346-exon-scaffold_9-1575043694:325988..326362TCONS_00073346-exon-scaffold_9-1575043694:325988..326362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:325988..326362 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.57107 0.558477 1.61757 2.8413 0 0 0 0.514477 0 0 0 0 0.142139 0 0 0 0 0.164446 0 0 0 0.302372 0 0 0 0 0 0.312756 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top