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TCONS_00073344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073344
Unique NameTCONS_00073344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073344 ID=TCONS_00073344|Name=TCONS_00073344|organism=Clytia hemisphaerica|type=transcript|length=1001bp
CTGCaattagacgatgttatcgtccgttacagtggtaataaaggcgggaa
aaatggcggtatggcgttatggcggtatacggaaaaaaatcggcgggaga
gtttcgaagaaacggacgataccaatttggcgcATCTTCACTCAAACGAT
TTTGCCTGACTGACCTCTGAGAGAGGNNAGTGCAAACAGCTAAACGTTTG
AGAAAGATGGCTGATGAAATTTCACTCAGattgtttttatgagatttatt
ttcatgGTGGAGaacaatttttacttttattagtCTTTTTTATGCATGAA
TTTTTGTGTACAGTATATAAGTCTTTAGTGTGTCAGTAGGGATTAGATTC
CTCAAGAtttgcttttggaaaaatctttttggatATGAACAACAACCTGA
CTGACTTTCCCCTCAAGATTCCATTTTAATCAGGCAAGATATGTTTTCCA
TTCTTTCCattccttgaaattttcagcttgTGCTTTTATGTGGTTTATGA
GCATGAGCAAGTAATTTTCACATATTCTCACTCTTATTCTCAACTACTTT
ATACCTCAaactactttttgatttttgattgaaaatactttccttcatgt
actatttttttttgtgaaatcacCAAAAAGGTTTTGGTAATAAGTTTCCC
TAGCTACTGCTTATAtacctttttataaaattatttcatgTTATTTTATG
TAATTTGTGCAATTTGTGAAATTGAACCAGTAGAACGtggttggaaaatt
gttctgtacgttatatgaagaataaaaccattcaaaacaataaaaaatgg
tACTGCTAAATGCAAGCTGTGAATACTCATGTCGCTACCCGTACATTTAa
cctatttatttaatttttgagaaatttttctatataagtggttaatttgt
tgttttgttttctacTTGTTTAGGGTAAGATGTAAAAATTGTACTTACAT
TCTCAAGCAATTGTTATTCCTTTACTATTCTACTACAGGTCAAGACATTC
A
Run BLAST on NCBI

transcript from alignment at scaffold_9:255777..256777

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073344 ID=TCONS_00073344|Name=TCONS_00073344|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at scaffold_9:255777..256777 (Clytia hemisphaerica)
TGAATGTCTTGACCTGTAGTAGAATAGTAAAGGAATAACAATTGCTTGAG AATGTAAGTACAATTTTTACATCTTACCCTAAACAAgtagaaaacaaaac aacaaattaaccacttatatagaaaaatttctcaaaaattaaataaatag gtTAAATGTACGGGTAGCGACATGAGTATTCACAGCTTGCATTTAGCAGT accattttttattgttttgaatggttttattcttcatataacgtacagaa caattttccaaccaCGTTCTACTGGTTCAATTTCACAAATTGCACAAATT ACATAAAATAAcatgaaataattttataaaaaggtaTATAAGCAGTAGCT AGGGAAACTTATTACCAAAACCTTTTTGgtgatttcacaaaaaaaaatag tacatgaaggaaagtattttcaatcaaaaatcaaaaagtagttTGAGGTA TAAAGTAGTTGAGAATAAGAGTGAGAATATGTGAAAATTACTTGCTCATG CTCATAAACCACATAAAAGCAcaagctgaaaatttcaaggaatGGAAAGA ATGGAAAACATATCTTGCCTGATTAAAATGGAATCTTGAGGGGAAAGTCA GTCAGGTTGTTGTTCATatccaaaaagatttttccaaaagcaaaTCTTGA GGAATCTAATCCCTACTGACACACTAAAGACTTATATACTGTACACAAAA ATTCATGCATAAAAAAGactaataaaagtaaaaattgttCTCCACcatga aaataaatctcataaaaacaatCTGAGTGAAATTTCATCAGCCATCTTTC TCAAACGTTTAGCTGTTTGCACTNNCCTCTCTCAGAGGTCAGTCAGGCAA AATCGTTTGAGTGAAGATgcgccaaattggtatcgtccgtttcttcgaaa ctctcccgccgatttttttccgtataccgccataacgccataccgccatt tttcccgcctttattaccactgtaacggacgataacatcgtctaattGCA G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045508XLOC_045508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073344-exon-scaffold_9-1491911889:255777..256777TCONS_00073344-exon-scaffold_9-1491911889:255777..256777Clytia hemisphaericaexon
TCONS_00073344-exon-scaffold_9-1510915933:255777..256777TCONS_00073344-exon-scaffold_9-1510915933:255777..256777Clytia hemisphaericaexon
TCONS_00073344-exon-scaffold_9-1575043694:255777..256777TCONS_00073344-exon-scaffold_9-1575043694:255777..256777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:255777..256777 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39547 0.956638 1.58994 2.39433 8.78233 5.94248 3.62819 4.50345 1.61481 1.44157 3.48249 1.48281 1.3138 1.04453 1.1461 0.787544 1.30319 0.688966 0.877596 1.05114 2.14724 2.19942 0.935664 1.08246 1.87281 3.14713 1.91568 1.86491 1.9962 2.80934
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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