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TCONS_00073339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073339
Unique NameTCONS_00073339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073339 ID=TCONS_00073339|Name=TCONS_00073339|organism=Clytia hemisphaerica|type=transcript|length=314bp
TACGTGCTATTCAACCGCTGATTAATAGGAAAGCAAAgctatttattttg
aattaatgGGGAAGCGAGTGAGTATTTACTGACGTTTCATATTTAAAGGC
CTCCTATTTTAAGTAAAGAAGATACAGCTGAAACATTTGTGAAAAGTCTT
TCAATGTATTTATTGAATAATAAGAGCGTCCAAAAGACGAGATAATATAA
ACAATATCCAGGGTTCCAATTTATAGCTTCGCACTTCACAAAATGCGAAG
TGAATTTTTTAGCGATCCAAAAAGATTTCCTaactaaaaatgcaaaatta
aaaaactataagaa
Run BLAST on NCBI

transcript from alignment at scaffold_9:212098..212411

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073339 ID=TCONS_00073339|Name=TCONS_00073339|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at scaffold_9:212098..212411 (Clytia hemisphaerica)
ttcttatagttttttaattttgcatttttagttAGGAAATCTTTTTGGAT CGCTAAAAAATTCACTTCGCATTTTGTGAAGTGCGAAGCTATAAATTGGA ACCCTGGATATTGTTTATATTATCTCGTCTTTTGGACGCTCTTATTATTC AATAAATACATTGAAAGACTTTTCACAAATGTTTCAGCTGTATCTTCTTT ACTTAAAATAGGAGGCCTTTAAATATGAAACGTCAGTAAATACTCACTCG CTTCCCcattaattcaaaataaatagcTTTGCTTTCCTATTAATCAGCGG TTGAATAGCACGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045503XLOC_045503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073339-exon-scaffold_9-1491911889:212098..212411TCONS_00073339-exon-scaffold_9-1491911889:212098..212411Clytia hemisphaericaexon
TCONS_00073339-exon-scaffold_9-1510915933:212098..212411TCONS_00073339-exon-scaffold_9-1510915933:212098..212411Clytia hemisphaericaexon
TCONS_00073339-exon-scaffold_9-1575043694:212098..212411TCONS_00073339-exon-scaffold_9-1575043694:212098..212411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:212098..212411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68897 0.988207 3.05974 5.23859 1.82214 1.79985 0.868575 2.03287 1.42326 0 1.71115 1.12484 1.12328 0 0.575432 0.617526 0 0.259912 2.51358 1.50302 2.28619 1.91164 0 1.40848 0.362674 0.971035 2.31591 2.96593 4.87403 5.72984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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