TCONS_00073336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073336
Unique NameTCONS_00073336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073336 ID=TCONS_00073336|Name=TCONS_00073336|organism=Clytia hemisphaerica|type=transcript|length=758bp
GAAACTTCAAAAACGAGCGGTTGACATCGAGACAACAATTATTACCGTTT
TCTCCAAGGCTAAGTGGTTTATTCAATTCTCCACGTAGAGATTAGATTTT
GTCCTGGTTTTTCATTAAAGAAAGGTTTATACTTGAATAAATTTTCTCCA
TGTCTCATGACATGTGTCCTAAATTCATATAAATTGACTTGTATACAGAA
TCATTGAATTCGGTAATGTTTGGTAATCCTTCTCGTAAAATCAAGATTCA
GCCCATTTCTTATGTTCTTAACCACGTCTTTTCCTCCAATTACCAAAAAC
TGTCACTACAAAAGAATTCACATTTCATAATCCAACATGTATTCGTTGTG
TTGATGTCTTTGTAAACATAATCCAAGACCAATCCGCTCTTCCATGCTCT
GTTCACAAACAGCGTTCCTTCTTCGATTCAATAGTAAACCCTTATTTTGT
TCAACCGTgcactttttcttttcatattcTCTGGCGTAGAATCTCATAAT
CTGTATTTCCATTTTCGAAAGCTTCCTTCCATgaattttatccattttta
aTTGCTCACTGTGTTCTGTGTCCTTTGAGACTTGACGCATGCATCTTTCA
ATAAAAAGTTCTCCTTGTTTGTAAAGTGTATCGTCTTCGATATCCAGTGA
TTGATAGCTATCACTCTCTTGTAAGAATCGCTTTTCCTTTCGTTTAAGTA
TCTTTTTGGCTGTGTTACTTAAAAAGGCTTTTTGGAAACCCATTTCGTTA
CTGTTTAG
Run BLAST on NCBI

protein sequence of TCONS_00073336-protein

>TCONS_00073336-protein ID=TCONS_00073336-protein|Name=TCONS_00073336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
LNSNEMGFQKAFLSNTAKKILKRKEKRFLQESDSYQSLDIEDDTLYKQGE
LFIERCMRQVSKDTEHSEQLKMDKIHGRKLSKMEIQIMRFYAREYEKKKC
TVEQNKGLLLNRRRNAVCEQSMEERIGLGLCLQRHQHNEYMLDYEM
Run BLAST on NCBI

transcript from alignment at scaffold_9:185090..185847

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073336 ID=TCONS_00073336|Name=TCONS_00073336|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at scaffold_9:185090..185847 (Clytia hemisphaerica)
CTAAACAGTAACGAAATGGGTTTCCAAAAAGCCTTTTTAAGTAACACAGC
CAAAAAGATACTTAAACGAAAGGAAAAGCGATTCTTACAAGAGAGTGATA
GCTATCAATCACTGGATATCGAAGACGATACACTTTACAAACAAGGAGAA
CTTTTTATTGAAAGATGCATGCGTCAAGTCTCAAAGGACACAGAACACAG
TGAGCAAttaaaaatggataaaattcATGGAAGGAAGCTTTCGAAAATGG
AAATACAGATTATGAGATTCTACGCCAGAgaatatgaaaagaaaaagtgc
ACGGTTGAACAAAATAAGGGTTTACTATTGAATCGAAGAAGGAACGCTGT
TTGTGAACAGAGCATGGAAGAGCGGATTGGTCTTGGATTATGTTTACAAA
GACATCAACACAACGAATACATGTTGGATTATGAAATGTGAATTCTTTTG
TAGTGACAGTTTTTGGTAATTGGAGGAAAAGACGTGGTTAAGAACATAAG
AAATGGGCTGAATCTTGATTTTACGAGAAGGATTACCAAACATTACCGAA
TTCAATGATTCTGTATACAAGTCAATTTATATGAATTTAGGACACATGTC
ATGAGACATGGAGAAAATTTATTCAAGTATAAACCTTTCTTTAATGAAAA
ACCAGGACAAAATCTAATCTCTACGTGGAGAATTGAATAAACCACTTAGC
CTTGGAGAAAACGGTAATAATTGTTGTCTCGATGTCAACCGCTCGTTTTT
GAAGTTTC

Coding sequence (CDS) from alignment at scaffold_9:185090..185847

>TCONS_00073336 ID=TCONS_00073336|Name=TCONS_00073336|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_9:185090..185847 (Clytia hemisphaerica)
CTAAACAGTAACGAAATGGGTTTCCAAAAAGCCTTTTTAAGTAACACAGC
CAAAAAGATACTTAAACGAAAGGAAAAGCGATTCTTACAAGAGAGTGATA
GCTATCAATCACTGGATATCGAAGACGATACACTTTACAAACAAGGAGAA
CTTTTTATTGAAAGATGCATGCGTCAAGTCTCAAAGGACACAGAACACAG
TGAGCAAttaaaaatggataaaattcATGGAAGGAAGCTTTCGAAAATGG
AAATACAGATTATGAGATTCTACGCCAGAgaatatgaaaagaaaaagtgc
ACGGTTGAACAAAATAAGGGTTTACTATTGAATCGAAGAAGGAACGCTGT
TTGTGAACAGAGCATGGAAGAGCGGATTGGTCTTGGATTATGTTTACAAA
GACATCAACACAACGAATACATGTTGGATTATGAAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045500XLOC_045500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073336-exon-scaffold_9-1491911889:185090..185847TCONS_00073336-exon-scaffold_9-1491911889:185090..185847Clytia hemisphaericaexon
TCONS_00073336-exon-scaffold_9-1510915933:185090..185847TCONS_00073336-exon-scaffold_9-1510915933:185090..185847Clytia hemisphaericaexon
TCONS_00073336-exon-scaffold_9-1575043694:185090..185847TCONS_00073336-exon-scaffold_9-1575043694:185090..185847Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073336-proteinTCONS_00073336-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:185090..185847 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.439013	0.143169	8.80185	7.98831	4.98494	5.75577	4.51986	20.9103	8.90409	2.23799	8.68163	4.68651	21.283	16.618	0.582142	7.45846	2.19824	2.3003	0.124961	0.0914277	0	0	0	0	0	0	2.94076	2.92309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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