|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073325 ID=TCONS_00073325|Name=TCONS_00073325|organism=Clytia hemisphaerica|type=transcript|length=246bp
ATTTATTTCCTATCAAACTTggTGCTTAGTGAAATGCTAGAAAAAGTTCG
AGAATACATTGGATGTCTTCATAAACTAGCGGAATGTGTTTCCATGCTTG
ATTTGTTAGTCTCGTTTGCGCATGCGTGCACATTGTCAAATTATGTGCGA
CCAGAGTTTACAGACACGTTGGCAATTAAAGAAGGACGCCATCCCATTCT
TGATAAAATTTCTACGGATAAACAGCTCATCGGAAATGATGTTGTA Run BLAST on NCBI transcript from alignment at scaffold_9:315870..318191- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073325 ID=TCONS_00073325|Name=TCONS_00073325|organism=Clytia hemisphaerica|type=transcript|length=2322bp|location=Sequence derived from alignment at scaffold_9:315870..318191- (Clytia hemisphaerica)
ATTTATTTCCTATCAAACTTGTAGGTTACATTTCTTTCCACATCTTTTAA
TCTTTTAAAAGTAAAATTAATATTTAACGTTAAAATTCTAGTCATTTTTG
GCAATACCAAGCCTCTGCAAGCATAAGTAGGAGGAAGAGAGAAGATCCAT
AACAAGTTATCTCCGGTTTTTGGTACTTACTACATGTTTTAGAAATGTGT
CTGTCTCACAGCTCCGGTGGGATTTTTTTTCCTTAGTGGGGATAAAAATT
CCTTTTCAAAATCCAATGGGGATAGAAATTCTATTGCTTCAAGCGTAAAA
AATCCAGTGGGAATGGTTTCGGAGTACAATTTTCAAACATTGAATGTTGA
ATGGGGATGAAATTAAAGTCAATCTCCCAGTGGGGCTGAAATTCTAGGGT
AATTTCCCACCGGGGACGAAATTTTTGCCAAATTTTCCAATGGAGCTGGG
GTCCCAGCGGGTCTGTAACACAGGGATGTGTCTAAGCAGTTTTAATGAAA
TTCCAAGCCCCCCCCCCCTTTGGAGCTTATTTATTTAACCAATTCAACAT
TTTTCTCATTTTTAGGGTGCTTAGTGAAATGCTAGAAAAAGTTCGAGAAT
ACATTGGATGTCTTCATAAACTAGCGGAATGTGTTTCCATGCTTGATTTG
TTAGTCTCGTTTGCGCATGCGTGCACATTGTCAAATTATGGTATGATTTA
TTTTACATGCCTCTTAAATAATACAAAATTAAAGTGGTAAGTATTCATAA
AAGGGTCATANAGAGAAGATCCATAACAAGTTATCTCCGGTTTTTGGTAC
TTACTACATGTTTTAGAAATGTGTCTGTCTCACAGCTCCGGTGGGATTTT
TTTCCTTAGTGGGGATAAAAATTCCTTTTCAAAATCCAATGGGGATAGAA
ATTCTATTGCTTCAAGCGTAAAAAATCCAGTGGGAATGGTTTCGGAGTAC
AATTTTCAAACATTGAATGTTGAATGGGGATGAAATTAAAGTCAATCTCC
CAGTGGGGCTGAAATTCTAGGGTAATTTCCCACCGGGGACGAAATTTTTG
CCAAATTTTCCAATGGAGCTGGGGTCCCAGCGGGTCTGTAACACAGGGAT
GTGTCTAAGCAGTTTTAATGAAATTCCAAGCCCCCCCCCCCTTTGGAGCT
TATTTATTTAACCAATTCAACATTTTTCTCATTTTTAGGGTGCTTAGTGA
AATGCTAGAAAAAGTTCGAGAATACATTGGATGTCTTCATAAACTAGCGG
AATGTGTTTCCATGCTTGATTTGTTAGTCTCGTTTGCGCATGCGTGCACA
TTGTCAAATTATGGTATGATTTATTTTACATGCCTCTTAAATAATACAAA
ATTAAAGTGGTAAGTATTCATAAAAGGGTCATAATAATCAACATTCCCTG
AAACACTAAGGCCTAGATTCTTTTAACAAAGGATATTTTACGATGTTAGC
TATTAACTTATGCTTAGTGTTTAAACTCTTGGTTTGAGACTTTCTTTGGC
AATTTGCGACTTATATTGTGCTTAACCTGTTCTTTTCAGGGCGAACTTCT
GGCTTTTTACTCTAAATTCTTGCTAAAAACTCTGCAATTCCGAAAAGACT
TATGTTATATTGTCCTTAAATTGTCCTTATTTGTTGAAGATCTGAGCCTC
ACATTTCTAAAAATTGTTTTTATAAAAAATGAGTACCTATAACTTTCTGG
AAAAGGTCCTTTCTTTCATCACTCCTGCTGACACACAGGTTCGTCCATAA
GGCGAGACCAATTTGATTAGTTGTTTTACAGGCCCGATCAACCCTGAAAT
TTCAAAATCGAAATAAAAATAAAATTTAATCTCATGGTATGTTTTTATTT
TCATTGCTTTACAGACTGTCAAATTTTCAAATTTTGGCAGTTTTTCAAAG
GTTTCGAGGTTGCTCAATTTTTCATTTTATCCATGAATTCGAGCTTTTTG
TGTCTTTTTAACTTCTTTTTCGCATTTTTGTCAAGATGTAGTAGTTTTTG
CTGGGTTTTTAGGAGATTTTATAGGTGAAATTCTACTTTTATTTTTATTT
TTTCGCCGACCGACCCTTTTTTGGGCAGCTATGCCCGTAAAACAACAAAT
TAAATTAGCTTCGCCTAACTATATGGATGTTATAGCCGTTAGATGAACGT
CGTTATAACATTTTTGTGCCAGCTTGGGGTTTGGACTTGCCATAACTGAG
CCGTTTGGTCTTCCTTTTCAGTGCGACCAGAGTTTACAGACACGTTGGCA
ATTAAAGAAGGACGCCATCCCATTCTTGATAAAATTTCTACGGATAAACA
GCTCATCGGAAATGATGTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073325-exon-scaffold_9-1575043694:318172..318191 | TCONS_00073325-exon-scaffold_9-1575043694:318172..318191 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1575043694:316879..317003 | TCONS_00073325-exon-scaffold_9-1575043694:316879..317003 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1575043694:315870..315970 | TCONS_00073325-exon-scaffold_9-1575043694:315870..315970 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1510915933:318172..318191 | TCONS_00073325-exon-scaffold_9-1510915933:318172..318191 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1510915933:316879..317003 | TCONS_00073325-exon-scaffold_9-1510915933:316879..317003 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1510915933:315870..315970 | TCONS_00073325-exon-scaffold_9-1510915933:315870..315970 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1491911889:318172..318191 | TCONS_00073325-exon-scaffold_9-1491911889:318172..318191 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1491911889:316879..317003 | TCONS_00073325-exon-scaffold_9-1491911889:316879..317003 | Clytia hemisphaerica | exon |
| TCONS_00073325-exon-scaffold_9-1491911889:315870..315970 | TCONS_00073325-exon-scaffold_9-1491911889:315870..315970 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:315870..318191 - |
Blast
BLAST of TCONS_00073325 vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 6.134e-28 Identity = 48/82 (58.54%), Postives = 68/82 (82.93%), Query Frame = 1
Query: 1 IYFLSNLVLSEMLEKVREYIGCLHKLAECVSMLDLLVSFAHACTLSNYVRPEFTDTLAIKEGRHPILDKISTDKQLIGNDVV 246
IY ++ +++ ++L ++ E+I CL+KL++ VSMLD+L+SFAHACTLS+YVRPEFTDTLAIK+G HPIL+KIS +K + N V
Sbjct: 588 IYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDTLAIKQGWHPILEKISAEKPIANNTYV 669
The following BLAST results are available for this feature:
|
