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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073318 ID=TCONS_00073318|Name=TCONS_00073318|organism=Clytia hemisphaerica|type=transcript|length=1013bp
ACCTCAACGCACTTACAGTTTTTGCGAATAAGattcaataattgaaaaat
gagTGGAGGTCTTGCCCCCAGCAAAAGTACAGTTTATGTTGGTAATCTAC
CTTTCTCCCTTACTAATAATGATTTACAcaaggtttttgaaaaattcgga
CGGATAGCTAAAGTTACAATCTTAAGAGATAAAGTAACACGAACCAGTAA
AGGCGTTGCTTTCGTTCAATTCATCGAGAGAGATTCTGCTATCACATGTT
GTAAATCAGTTAatgaaaaaacgttgtttgaacgGAAAATAAAATGTGTC
ATTGCAAAAGACAATGGGAGAGCTTCAGAGTTCATTCGAAAAAAGGATTA
TCCAGATAAATCTAGTTGTTATGAATGTGGAGAGACTGGACATCTTAGCT
ATGCTTGCCCAAAAAATTTACTTGGGAGCCGAGAGCCACCacctaaaaaa
gagaaaaaaactaagaaaGAGAAAGCAGAGGAGAAAGAACATTCAAAGAA
tttaatcaagagttattaTGATGCTGATGAGGCAAATGATGGTGTTAATG
AAGAAGAACAAGGGGAAGACCCTTATGAATCAAGTCTCAGTTATGCAATT
GCTCTTGATTCTAGTCaacaaaaaagacatttttcCTCTATAGTTGTCCA
ACCTTCAACATCAAGGACTTCAACAGATTACGATGGTTACAAGGATAATA
ATGATAGGGAAGAAGAGAGTTatgtcaaaagaaaaaagtataaacCGTCA
TCATATTTCAGTGACGAGGAGGAAGAAGATGAATCTTAGGATAACAATTT
GTGAACTTCTTCTTTGTTCATTTAGtatcactaaatttgcaataaaaata
tttggctgATTTATAAATTATTATGTAAGCCAAATGccttttttaaatca
atgacatcttagaataaaaataaaatgcttCTGATTATTCGAACAATATG
AAGGAATGGTTTGATAAgaacactttttaaatttagcaACTTGATTTCTG
TGCTTCTAAaaac Run BLAST on NCBI protein sequence of TCONS_00073318-protein >TCONS_00073318-protein ID=TCONS_00073318-protein|Name=TCONS_00073318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MSGGLAPSKSTVYVGNLPFSLTNNDLHKVFEKFGRIAKVTILRDKVTRTS
KGVAFVQFIERDSAITCCKSVNEKTLFERKIKCVIAKDNGRASEFIRKKD
YPDKSSCYECGETGHLSYACPKNLLGSREPPPKKEKKTKKEKAEEKEHSK
NLIKSYYDADEANDGVNEEEQGEDPYESSLSYAIALDSSQQKRHFSSIVV
QPSTSRTSTDYDGYKDNNDREEESYVKRKKYKPSSYFSDEEEEDES Run BLAST on NCBI transcript from alignment at scaffold_9:192786..194434- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073318 ID=TCONS_00073318|Name=TCONS_00073318|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at scaffold_9:192786..194434- (Clytia hemisphaerica)
ACCTCAACGCACTTACAGTTTTTGCGAATAAGGTAGTTACTTTGTATTTA
AAAAATATGTATGCTCCCCTAAAATGTATGTAAGATATTTGCCAGCTGGA
AATATTTTCAATTTTTAAACAAAGGATAGCCTTATTTACTGCAACTTTTA
CCACAGTATTGCTGGGTGCTGTGGCCAATTGCCAGGACTGCAAACATCAG
AATTCCACAGAACAGATCTGAATTTCAAGGTAGGTAGATTTTGCCTAAGA
ATAGATCCACGTTTTCCAGGTATCCAAGCAGATTTTCTTAGAAAAGATCG
CTGCTGGTTCAGAACAGATGATTTCAAAGAACCTCTCTGTGGATGCTTTC
AAGTACAGAGAGGCTTTTCATGTCCAAGATTTAACTCATTACATTTTTGA
ATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAATTTCGAGTCCCACGT
AGGGTCCATTTTTCGAACCTCAGCGGAGCACCCCTGTCGGTCGACAAGGG
TAGTCCCCCCCCCCCGGGTCCAATATTTAACTCATTATTTAGCAACAGGT
GACAAGAGATTGTGACAAATAAATCTTTACTATTAGCACAACAGCTTTTT
TTGTTTTCATTCAAAGGATAACAAAAAACACTATATACCTTTTTTAATTT
CTTATTGATATTTTGTAGATTCAATAATTGAAAAATGAGTGGAGGTCTTG
CCCCCAGCAAAAGTACAGTTTATGTTGGTAATCTACCTTTCTCCCTTACT
AATAATGATTTACACAAGGTTTTTGAAAAATTCGGACGGATAGCTAAAGT
TACAATCTTAAGAGATAAAGTAACACGAACCAGTAAAGGCGTTGCTTTCG
TTCAATTCATCGAGAGAGATTCTGCTATCACATGTTGTAAATCAGTTAAT
GAAAAAACGTTGTTTGAACGGAAAATAAAATGTGTCATTGCAAAAGACAA
TGGGAGAGCTTCAGAGTTCATTCGAAAAAAGGATTATCCAGATAAATCTA
GTTGTTATGAATGTGGAGAGACTGGACATCTTAGCTATGCTTGCCCAAAA
AATTTACTTGGGAGCCGAGAGCCACCACCTAAAAAAGAGAAAAAAACTAA
GAAAGAGAAAGCAGAGGAGAAAGAACATTCAAAGAATTTAATCAAGAGTT
ATTATGATGCTGATGAGGCAAATGATGGTGTTAATGAAGAAGAACAAGGG
GAAGACCCTTATGAATCAAGTCTCAGTTATGCAATTGCTCTTGATTCTAG
TCAACAAAAAAGACATTTTTCCTCTATAGTTGTCCAACCTTCAACATCAA
GGACTTCAACAGATTACGATGGTTACAAGGATAATAATGATAGGGAAGAA
GAGAGTTATGTCAAAAGAAAAAAGTATAAACCGTCATCATATTTCAGTGA
CGAGGAGGAAGAAGATGAATCTTAGGATAACAATTTGTGAACTTCTTCTT
TGTTCATTTAGTATCACTAAATTTGCAATAAAAATATTTGGCTGATTTAT
AAATTATTATGTAAGCCAAATGCCTTTTTTAAATCAATGACATCTTAGAA
TAAAAATAAAATGCTTCTGATTATTCGAACAATATGAAGGAATGGTTTGA
TAAGAACACTTTTTAAATTTAGCAACTTGATTTCTGTGCTTCTAAAAAC Coding sequence (CDS) from alignment at scaffold_9:192786..194434- >TCONS_00073318 ID=TCONS_00073318|Name=TCONS_00073318|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_9:192786..194434- (Clytia hemisphaerica)
ATGAGTGGAGGTCTTGCCCCCAGCAAAAGTACAGTTTATGTTGGTAATCT
ACCTTTCTCCCTTACTAATAATGATTTACACAAGGTTTTTGAAAAATTCG
GACGGATAGCTAAAGTTACAATCTTAAGAGATAAAGTAACACGAACCAGT
AAAGGCGTTGCTTTCGTTCAATTCATCGAGAGAGATTCTGCTATCACATG
TTGTAAATCAGTTAATGAAAAAACGTTGTTTGAACGGAAAATAAAATGTG
TCATTGCAAAAGACAATGGGAGAGCTTCAGAGTTCATTCGAAAAAAGGAT
TATCCAGATAAATCTAGTTGTTATGAATGTGGAGAGACTGGACATCTTAG
CTATGCTTGCCCAAAAAATTTACTTGGGAGCCGAGAGCCACCACCTAAAA
AAGAGAAAAAAACTAAGAAAGAGAAAGCAGAGGAGAAAGAACATTCAAAG
AATTTAATCAAGAGTTATTATGATGCTGATGAGGCAAATGATGGTGTTAA
TGAAGAAGAACAAGGGGAAGACCCTTATGAATCAAGTCTCAGTTATGCAA
TTGCTCTTGATTCTAGTCAACAAAAAAGACATTTTTCCTCTATAGTTGTC
CAACCTTCAACATCAAGGACTTCAACAGATTACGATGGTTACAAGGATAA
TAATGATAGGGAAGAAGAGAGTTATGTCAAAAGAAAAAAGTATAAACCGT
CATCATATTTCAGTGACGAGGAGGAAGAAGATGAATCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073318-exon-scaffold_9-1575043694:194403..194434 | TCONS_00073318-exon-scaffold_9-1575043694:194403..194434 | Clytia hemisphaerica | exon |
| TCONS_00073318-exon-scaffold_9-1575043694:192786..193766 | TCONS_00073318-exon-scaffold_9-1575043694:192786..193766 | Clytia hemisphaerica | exon |
| TCONS_00073318-exon-scaffold_9-1510915933:194403..194434 | TCONS_00073318-exon-scaffold_9-1510915933:194403..194434 | Clytia hemisphaerica | exon |
| TCONS_00073318-exon-scaffold_9-1510915933:192786..193766 | TCONS_00073318-exon-scaffold_9-1510915933:192786..193766 | Clytia hemisphaerica | exon |
| TCONS_00073318-exon-scaffold_9-1491911889:194403..194434 | TCONS_00073318-exon-scaffold_9-1491911889:194403..194434 | Clytia hemisphaerica | exon |
| TCONS_00073318-exon-scaffold_9-1491911889:192786..193766 | TCONS_00073318-exon-scaffold_9-1491911889:192786..193766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:192786..194434 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00073318 vs. Swiss-Prot (Human)
Match: ZCRB1 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 3.447e-61 Identity = 88/128 (68.75%), Postives = 109/128 (85.16%), Query Frame = 1
Query: 49 MSGGLAPSKSTVYVGNLPFSLTNNDLHKVFEKFGRIAKVTILRDKVTRTSKGVAFVQFIERDSAITCCKSVNEKTLFERKIKCVIAKDNGRASEFIRKKDYPDKSSCYECGETGHLSYACPKNLLGSR 432
MSGGLAPSKSTVYV NLPFSLTNNDL+++F K+G++ KVTI++DK TR SKGVAF+ F+++DSA C +++N K LF R IK IA DNGRA+EFIR+++Y DKS CYECGE+GHLSYACPKN+LG R
Sbjct: 1 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGER 128
The following BLAST results are available for this feature:
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