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TCONS_00073314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073314
Unique NameTCONS_00073314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073314 ID=TCONS_00073314|Name=TCONS_00073314|organism=Clytia hemisphaerica|type=transcript|length=633bp
taaaaaatgtcatcGGCTTGAAATGAAGAGCAATTTCAAATCGAAACCAT
CAAATATTTACCACCCATGAGTCTCTCCCGAAAAAGGCCGAAAAAACTTT
GACAGCCACTTAGATAATTTAACTTCATTGTTTCACCCTTGGAGGTGTCA
AACGTAAGCCATACAAAAAAATCCTGGGAGCAAAGGTTAGAAAAATTCAT
GTTTTCACCAAGGTCACGGTTGACATGGTTTTCCActaaaatagtattta
aaaatttttccctGATGACTGACTGAACAAAATTTCACCGAGTTAGCGAA
AAGAGTCGGATATTTACAAAGGAAATGGTCTAATCGAAACCAATAGTGAC
ATGAGTTTTAGCACTGTACTCTTTTTCATATTCAACCAAGGTAATTCGTA
AAGGCGGAAACGTAAGGGCGTAAGAGTAGACACGCCAGCAAAACTAGTGA
CGATTGACATAATAATAGTCAAGTTAGTGAAGTGGTGAAAATACAtctaa
aaacaagccaaaatgaAGGTAGTAATGTTTGAACACAAACAGAACTGTAC
TAGAGACGGAATGAATAAATAACGTAATCGTAGGAACGGCGTCAAAAACG
ACGGGTGTAACTTCTCATGCGTGCTGTCATTCT
Run BLAST on NCBI

transcript from alignment at scaffold_9:5946..7152-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073314 ID=TCONS_00073314|Name=TCONS_00073314|organism=Clytia hemisphaerica|type=transcript|length=1207bp|location=Sequence derived from alignment at scaffold_9:5946..7152- (Clytia hemisphaerica)
TAAAAAATGTCATCGGCTTGAAATGAAGAGCAATTTCAAATCGAAACCAT CAAATATTTACCACCCATGAGTCTCTCCCGAAAAAGGCCGAAAAAACTTT GACAGCCACTTAGATAATTTAACTTCATTGTTTCACCCTTGGAGGTGTCA AACGTAAGCCATACAAAAAAATCCTGGGAGCAAAGGTTAGAAAAATTCAT GTTTTCACCAAGGTCACGGTTGACATGGTTTTCCACTAAAATAGTATTTA AAAATTTTTCCCTGATGACTGACTGAACAAAATTTCACCGAGTTAGCGAA AAGAGTCGGATATTTACAAAGGAAATGGTCTAATCGAAACCAATAGTGAC ATGAGTTTTAGCACTGTACTCTTTTTCATATTCAACCAAGGTGATTCGTA AAGGCGGAAACGTAAGGGCGTAAGAGTAGACACGCCAGCAAAACTAGTGA CGATTGACATAATTATAGTCAAGTTATTGAAGTGGTGAAAATACATCTAA AAACAAGCCAAAATGAAGGTAGTAATGTTTGAACACNAAAAGGGACCCTG AATGGGACTGAAATTCCAAAATTTTCTACTTTTTCCCCAAATTTTCCAAA AATAGGCACCCTACGAGGGACTGANNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNCCCCTTTTTCCCCCCCCCCCCCCCCCCCCCCCGGGGGAAATGATCCA ATCGAAACCAATAGTGACATGAGTTTTAGCACTGTACTCTTTTTCATATT AAAATTCAACCAAGGTAATTCGTAAAGGCGGAAACGTAAGGGCGTAAGAG TAGACACGCCAGCAAAACTAGTGACGATTGACATAATAATAGTCAAGTTA GTGAAGTGGTGAAAATACATCTAAAAACAAGCCAAAATGAAGGTAGTAAT GTTTGAACACAAACAGAACTGTACTAGAGACGGAATGAATAAATAACGTA ATCGTAGGAACGGCGTCAAAAACGACGGGTGTAACTTCTCATGCGTGCTG TCATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045482XLOC_045482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073314-exon-scaffold_9-1575043694:6763..7152TCONS_00073314-exon-scaffold_9-1575043694:6763..7152Clytia hemisphaericaexon
TCONS_00073314-exon-scaffold_9-1575043694:5946..6188TCONS_00073314-exon-scaffold_9-1575043694:5946..6188Clytia hemisphaericaexon
TCONS_00073314-exon-scaffold_9-1510915933:6763..7152TCONS_00073314-exon-scaffold_9-1510915933:6763..7152Clytia hemisphaericaexon
TCONS_00073314-exon-scaffold_9-1510915933:5946..6188TCONS_00073314-exon-scaffold_9-1510915933:5946..6188Clytia hemisphaericaexon
TCONS_00073314-exon-scaffold_9-1491911889:6763..7152TCONS_00073314-exon-scaffold_9-1491911889:6763..7152Clytia hemisphaericaexon
TCONS_00073314-exon-scaffold_9-1491911889:5946..6188TCONS_00073314-exon-scaffold_9-1491911889:5946..6188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:5946..7152 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460603 0.7107 0 0 0.163676 0.0555184 0.228963 0.953987 1.8794 0.859244 1.66496 2.42528 3.85403 0.851458 2.64197 1.38107 1.13879 2.4787 6.46355 4.28105 2.58128 3.3951 2.24485 2.7095 1.86895 2.09137 16.1724 13.4863 5.96782 4.97782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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