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TCONS_00073307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073307
Unique NameTCONS_00073307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073307 ID=TCONS_00073307|Name=TCONS_00073307|organism=Clytia hemisphaerica|type=transcript|length=1698bp
cttgcgaacttggaTTCatgtaactctcatccttgctgtgcaaatacatc
ctgtagatgactgatgttgttttttctgaaagctagatttcctagtgtga
ctaactgcttgGAGATCCTGTGTCGTCTGCCCCCCCtgccctgttacaga
caaattctggaatggcccaatcaataaattttgtgtGGACAATTAACGCA
AAGAAGATGGGTCGAAACAAAATGGTCACATCCTTGttgcttgaaaaaaa
tacttatttgaaaATTGCCATATCTCATTAGCTATGATATACTTACAGGT
AAATGTAAACTTGACTGAGGACTGAATGCTAATGCTGTCACTTTTTCCAG
GACCATAGACAATAGAGGACTCCAAAAAAGTAGTGTGGGAAATTCGTGTG
TGCTTTTTGCTTCGGTACCACGATTGAGCCTCTGGAAAGCGGTCAGAAGA
GTAATTTCACGGCTACCGATATCAAGCCTCTGCTTGATCCGCTAAAGTCG
TTTAGCCTCTGAATAGATCGGCAACCGGTTCTATTTATACCCTCTAGaat
ttatcaaaacaaacttactgTCATTCTTTAGCCGACCAAGATGGTGAGTC
TAGTCAACAACTTTTTCCACTTTTCTTCCTGTGGAAATCATCAGAATCTT
TCAgccaaacattttcaaaagttcTAAAGTTTCCTTTGTTATCATTGAAT
TTCAGTTCCTTGGCTTTATTTTCCGGCTTTGTAACATCTTTTGGTGTTTT
ATGAACGAATCATTAGAGCTTCAATGGTGTTTTCAGcatattcgattttt
ttttgtcCTAGACCACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCAC
GTCAGTGCTGGTCATGGCCGTGTTGGCAAACACAGAAAACATCCCGGTGG
TCGAGGAAAAGCTGGTGGCCAACATCACCACAGAACACTTATGGACAAGT
ACCATCCTGGTTACTTTGGTAAAGTTGGTATGAGATATTTCCACAAAACT
CTCAATAAATACCACTGCCCAACTGTCAATTGTGATAAATTATGGAGCCT
TGTCAGTGAACAAACAAGAAAGAACTATGCTGGAAAGAAAGAAGGTCCAG
CACCAGTCATTGATTGTGTTCAGGCaggATACTACAAAGTCCTTGGAAAA
GGGTTATTACCAAAACAACCTGTCATCGTAAAAGCTCGATTCTTCAGTCG
AAAAGCAGAAGATAAAATCAAGAGTGTTGGAGGCACTTGTGTATTAACTG
CTTAAATTGTGAATAAAAAAATCTGGTGGGAATTGCTCTGTCTCTGTTAT
TTAGGGAATTGTTGTTGAGTTTGATTGTACAATAAAGGNCTGTCTCTGTT
ATTTAAGGAATTGTTGTTGAGTTTGATTGTACAATAAAGGAAGGTTCTAT
AATACTGCTATTTTCATCTTAAGTGCAATGAATGTGATAGCTTTTACAAT
GACAAGGCTTTGAAATGAAAGACtcgtgatatttttttgagTGTTAAGAC
CATCACTTGAATTATACAATCAAGCTTGATTTGTTTGTATCAGCCGTCTT
TTTTTTCTGTATCAACTATTGAGCTTTGAGTAATTTTGTGCACTTGTATA
AATTGCAATGGTGTGATGATTTCTTATATCTGTCAATCCTCTGAACAAAA
TGAAGATAGATTATAACGATCTGAACATTGCTAAGTACCTCTTTTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_9:220519..223850+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073307 ID=TCONS_00073307|Name=TCONS_00073307|organism=Clytia hemisphaerica|type=transcript|length=3332bp|location=Sequence derived from alignment at scaffold_9:220519..223850+ (Clytia hemisphaerica)
cttgcgaacttggaTTCatgtaactctcatccttgctgtgcaaatacatc ctgtagatgactgatgttgttttttctgaaagctagatttcctagtgtga ctaactgcttgGAGATCCTGTGTCGTCTGCCCCCCCtgccctgttacaga caaattctggaatggcccaatcaataaattttgtgtGGACAATTAACGCA AAGAAGATGGGTCGAAACAAAATGGTCACATCCTTGttgcttgaaaaaaa tacttatttgaaaATTGCCATATCTCATTAGCTATGATATACTTACAGGT AAATGTAAACTTGACTGAGGACTGAATGCTAATGCTGTCACTTTTTCCAG GACCATAGACAATAGAGGACTCCAAAAAAGTAGTGTGGGAAATTCGTGTG TGCTTTTTGCTTCGGTACCACGATTGAGCCTCTGGAAAGCGGTCAGAAGA GTAATTTCACGGCTACCGATATCAAGCCTCTGCTTGATCCGCTAAAGTCG TTTAGCCTCTGAATAGATCGGCAACCGGTTCTATTTATACCCTCTAGaat ttatcaaaacaaacttactgTCATTCTTTAGCCGACCAAGATGGTGAGTC TAGTCAACAACTTTTTCCACTTTTCTTCCTGTGGAAATCATCAGAATCTT TCAgccaaacattttcaaaagttcTAAAGTTTCCTTTGTTATCATTGAAT TTCAGTTCCTTGGCTTTATTTTCCGGCTTTGTAACATCTTTTGGTGTTTT ATGAACGAATCATTAGAGCTTCAATGGTGTTTTCAGcatattcgattttt ttttgtcCTAGACCACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCAC GTCAGTGCTGGTCATGGCCGTGTTGGTATGTTAAGATTTTATGAGTACAT AAGTGTGCCAGAAGAGTAACTGTAATCATAACCTTGCTTGAAAGTTTAAC CTCTCCATTAAGTATTAATTCACTGAGGAAATTTTGTTTCAATCACCTGA AGATGCTTGATGGatttattttatcatttctCCAGGCAAACACAGAAAAC ATCCCGGTGGTCGAGGAAAAGCTGGTGGCCAACATCACCACAGAACACTT ATGGACAAGTACCATCCTGGTTACTTTGGTAAAGTTGGTATGAGATATTT CCACAAAACTCTCAATAAATACCACTGCCCAACTGTCAATTGTGATAAAT TATGGAGCCTTGTCAGTGAACAAACAAGAAAGAACTATGCTGGAAAGAAA GAAGGTCCAGCACCAGTCATTGATTGTGTTCAGGCagtatgtttcattta tatgtCATTTGTTTATGGAAGCATTATTTAGCTGTGTGATTCCAACAACT TTCTTTGCTGAGGCATCAGGGGGCCACTCGCACATCAATTTTTCTCATGT TagcagttgggtgtttaagataaaaacatcaatttttgcTCTACACAACA ATTATTGTCGAAAGCGTTAATTTTTTAGATGATAAATAATGATGATTCAG CATtagatctttgaaaaaattgttgtttttcaCCCAACTGGTTAGGTTGA GCGGGTTGGTTCAAGTATGAGATACTAATTTTGAAGATCTATTTTTCATA GTATCTGGTCACTCTTGCTGAAAAGGAcctgtttttgattttgttttgat atgtttgGTAGTTGTTTTTTCCTGTATCATATCTTATGCTGGCTAGGCTA Cgtatatcttccttcgtttcgagagtaaaactcctactcttcgcgatatg agcactgctcttgttttgaatattaaaatcctttggataaatcgcatgcg cactgaggtttaaATGATACAATAGAGAGTTtaaaaaacctaagccaatc agctgtgtctTAAACATTATTTTCTATTATGtataaacctattaataagc aattcccggtgggggctaCTAGTGGCCGCccatagcagtgcctatagtcC AAGAGTAAGACCACGAAGGtgataaagatagatggagagtcaatgccttt tgttctattctgatttatcatcggaagcaaagaGCTGTTtcgttgctttg ggaataagatgattaattttgggtatactcgtgggaatatttaagatgaa tgaaaaaacattacatttttaacaagtatattgaaatatgatagccttgt catgaaaaattaaaaaaaacttcacataataagccctaataagcacaata ctccaaacttctaggggaagctgcgcATAaagtgttacgattaggaacct tgtatcgatcattttgtcagagtatgaaaaccgctgcccacttacacgtg aagatttgaagataagaaactttcaatgataatgtgatgcaactttcaat gttaacaaaatgccagcccaaaaatgtgtccctatgaaattaatatacta TTTTAGTCTTACATCAGTTGGAACTATTTTGAATCGtattttaacaagga ttttcggcaaaattaagtttttcaaaatcaaccaaagagtctctttctgt tcttataaagttataaattgatgtttgatggtacatcaaagaaaagccac tttaaatagatttataaaagatttcaacggccatctaggtcattaccgag acgttttctctccatctatatctttattaccttcatggtaaGACCTAAAA GCCTGgcgctgtctattgtgtagactactgGGAGCCAAGCTATTTAATTC GAATGGAAATTATTAAGTTATCAAATTTTAGAGTAAtgaaaaattcataa ttttttttagggATACTACAAAGTCCTTGGAAAAGGGTTATTACCAAAAC AACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAAAGCAGAAGATAAA ATCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTTAAATTGTGAATAA AAAAATCTGGTGGGAATTGCTCTGTCTCTGTTATTTAGGGAATTGTTGTT GAGTTTGATTGTACAATAAAGGNCTGTCTCTGTTATTTAAGGAATTGTTG TTGAGTTTGATTGTACAATAAAGGAAGGTTCTATAATACTGCTATTTTCA TCTTAAGTGCAATGAATGTGATAGCTTTTACAATGACAAGGCTTTGAAAT GAAAGACtcgtgatatttttttgagTGTTAAGACCATCACTTGAATTATA CAATCAAGCTTGATTTGTTTGTATCAGCCGTCTTTTTTTTCTGTATCAAC TATTGAGCTTTGAGTAATTTTGTGCACTTGTATAAATTGCAATGGTGTGA TGATTTCTTATATCTGTCAATCCTCTGAACAAAATGAAGATAGATTATAA CGATCTGAACATTGCTAAGTACCTCTTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045477XLOC_045477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073307-exon-scaffold_9-1491911889:220519..221393TCONS_00073307-exon-scaffold_9-1491911889:220519..221393Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1510915933:220519..221393TCONS_00073307-exon-scaffold_9-1510915933:220519..221393Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1575043694:220519..221393TCONS_00073307-exon-scaffold_9-1575043694:220519..221393Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1491911889:221554..221804TCONS_00073307-exon-scaffold_9-1491911889:221554..221804Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1510915933:221554..221804TCONS_00073307-exon-scaffold_9-1510915933:221554..221804Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1575043694:221554..221804TCONS_00073307-exon-scaffold_9-1575043694:221554..221804Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1491911889:223279..223850TCONS_00073307-exon-scaffold_9-1491911889:223279..223850Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1510915933:223279..223850TCONS_00073307-exon-scaffold_9-1510915933:223279..223850Clytia hemisphaericaexon
TCONS_00073307-exon-scaffold_9-1575043694:223279..223850TCONS_00073307-exon-scaffold_9-1575043694:223279..223850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:220519..223850 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19942 1.1094 1.55456 2.82546 0.841748 0.717449 0.575685 0.507887 1.16699 1.3372 1.18798 1.44072 1.56343 2.15345 2.14872 2.06216 2.12963 1.13511 1.48446 1.16333 1.67076 2.65961 2.90111 2.1458 0.345372 0.366461 1.95153 2.721 3.3685 3.33497
Blast
BLAST of TCONS_00073307 vs. Swiss-Prot (Human)
Match: RL27A (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.101e-46
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 2
Query:  941 MDKYHPGYFGKVGMRYFHKTLNKYHCPTVNCDKLWSLVSEQTRKNYAGKKEGPAPVIDCVQAGYYKVLGKGLLPKQPVIVKARFFSRKAEDKIKSVGGTCVLTA 1252
             DKYHPGYFGKVGM+++H   N+  CPTVN DKLW+LVSEQTR N A  K G AP+ID V++GYYKVLGKG LPKQPVIVKA+FFSR+AE+KIKSVGG CVL A
Sbjct:   45 FDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
The following BLAST results are available for this feature:
BLAST of TCONS_00073307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL27A2.101e-4673.0860S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
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