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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073307 ID=TCONS_00073307|Name=TCONS_00073307|organism=Clytia hemisphaerica|type=transcript|length=1698bp
cttgcgaacttggaTTCatgtaactctcatccttgctgtgcaaatacatc
ctgtagatgactgatgttgttttttctgaaagctagatttcctagtgtga
ctaactgcttgGAGATCCTGTGTCGTCTGCCCCCCCtgccctgttacaga
caaattctggaatggcccaatcaataaattttgtgtGGACAATTAACGCA
AAGAAGATGGGTCGAAACAAAATGGTCACATCCTTGttgcttgaaaaaaa
tacttatttgaaaATTGCCATATCTCATTAGCTATGATATACTTACAGGT
AAATGTAAACTTGACTGAGGACTGAATGCTAATGCTGTCACTTTTTCCAG
GACCATAGACAATAGAGGACTCCAAAAAAGTAGTGTGGGAAATTCGTGTG
TGCTTTTTGCTTCGGTACCACGATTGAGCCTCTGGAAAGCGGTCAGAAGA
GTAATTTCACGGCTACCGATATCAAGCCTCTGCTTGATCCGCTAAAGTCG
TTTAGCCTCTGAATAGATCGGCAACCGGTTCTATTTATACCCTCTAGaat
ttatcaaaacaaacttactgTCATTCTTTAGCCGACCAAGATGGTGAGTC
TAGTCAACAACTTTTTCCACTTTTCTTCCTGTGGAAATCATCAGAATCTT
TCAgccaaacattttcaaaagttcTAAAGTTTCCTTTGTTATCATTGAAT
TTCAGTTCCTTGGCTTTATTTTCCGGCTTTGTAACATCTTTTGGTGTTTT
ATGAACGAATCATTAGAGCTTCAATGGTGTTTTCAGcatattcgattttt
ttttgtcCTAGACCACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCAC
GTCAGTGCTGGTCATGGCCGTGTTGGCAAACACAGAAAACATCCCGGTGG
TCGAGGAAAAGCTGGTGGCCAACATCACCACAGAACACTTATGGACAAGT
ACCATCCTGGTTACTTTGGTAAAGTTGGTATGAGATATTTCCACAAAACT
CTCAATAAATACCACTGCCCAACTGTCAATTGTGATAAATTATGGAGCCT
TGTCAGTGAACAAACAAGAAAGAACTATGCTGGAAAGAAAGAAGGTCCAG
CACCAGTCATTGATTGTGTTCAGGCaggATACTACAAAGTCCTTGGAAAA
GGGTTATTACCAAAACAACCTGTCATCGTAAAAGCTCGATTCTTCAGTCG
AAAAGCAGAAGATAAAATCAAGAGTGTTGGAGGCACTTGTGTATTAACTG
CTTAAATTGTGAATAAAAAAATCTGGTGGGAATTGCTCTGTCTCTGTTAT
TTAGGGAATTGTTGTTGAGTTTGATTGTACAATAAAGGNCTGTCTCTGTT
ATTTAAGGAATTGTTGTTGAGTTTGATTGTACAATAAAGGAAGGTTCTAT
AATACTGCTATTTTCATCTTAAGTGCAATGAATGTGATAGCTTTTACAAT
GACAAGGCTTTGAAATGAAAGACtcgtgatatttttttgagTGTTAAGAC
CATCACTTGAATTATACAATCAAGCTTGATTTGTTTGTATCAGCCGTCTT
TTTTTTCTGTATCAACTATTGAGCTTTGAGTAATTTTGTGCACTTGTATA
AATTGCAATGGTGTGATGATTTCTTATATCTGTCAATCCTCTGAACAAAA
TGAAGATAGATTATAACGATCTGAACATTGCTAAGTACCTCTTTTTCT Run BLAST on NCBI transcript from alignment at scaffold_9:220519..223850+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073307 ID=TCONS_00073307|Name=TCONS_00073307|organism=Clytia hemisphaerica|type=transcript|length=3332bp|location=Sequence derived from alignment at scaffold_9:220519..223850+ (Clytia hemisphaerica)
cttgcgaacttggaTTCatgtaactctcatccttgctgtgcaaatacatc
ctgtagatgactgatgttgttttttctgaaagctagatttcctagtgtga
ctaactgcttgGAGATCCTGTGTCGTCTGCCCCCCCtgccctgttacaga
caaattctggaatggcccaatcaataaattttgtgtGGACAATTAACGCA
AAGAAGATGGGTCGAAACAAAATGGTCACATCCTTGttgcttgaaaaaaa
tacttatttgaaaATTGCCATATCTCATTAGCTATGATATACTTACAGGT
AAATGTAAACTTGACTGAGGACTGAATGCTAATGCTGTCACTTTTTCCAG
GACCATAGACAATAGAGGACTCCAAAAAAGTAGTGTGGGAAATTCGTGTG
TGCTTTTTGCTTCGGTACCACGATTGAGCCTCTGGAAAGCGGTCAGAAGA
GTAATTTCACGGCTACCGATATCAAGCCTCTGCTTGATCCGCTAAAGTCG
TTTAGCCTCTGAATAGATCGGCAACCGGTTCTATTTATACCCTCTAGaat
ttatcaaaacaaacttactgTCATTCTTTAGCCGACCAAGATGGTGAGTC
TAGTCAACAACTTTTTCCACTTTTCTTCCTGTGGAAATCATCAGAATCTT
TCAgccaaacattttcaaaagttcTAAAGTTTCCTTTGTTATCATTGAAT
TTCAGTTCCTTGGCTTTATTTTCCGGCTTTGTAACATCTTTTGGTGTTTT
ATGAACGAATCATTAGAGCTTCAATGGTGTTTTCAGcatattcgattttt
ttttgtcCTAGACCACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCAC
GTCAGTGCTGGTCATGGCCGTGTTGGTATGTTAAGATTTTATGAGTACAT
AAGTGTGCCAGAAGAGTAACTGTAATCATAACCTTGCTTGAAAGTTTAAC
CTCTCCATTAAGTATTAATTCACTGAGGAAATTTTGTTTCAATCACCTGA
AGATGCTTGATGGatttattttatcatttctCCAGGCAAACACAGAAAAC
ATCCCGGTGGTCGAGGAAAAGCTGGTGGCCAACATCACCACAGAACACTT
ATGGACAAGTACCATCCTGGTTACTTTGGTAAAGTTGGTATGAGATATTT
CCACAAAACTCTCAATAAATACCACTGCCCAACTGTCAATTGTGATAAAT
TATGGAGCCTTGTCAGTGAACAAACAAGAAAGAACTATGCTGGAAAGAAA
GAAGGTCCAGCACCAGTCATTGATTGTGTTCAGGCagtatgtttcattta
tatgtCATTTGTTTATGGAAGCATTATTTAGCTGTGTGATTCCAACAACT
TTCTTTGCTGAGGCATCAGGGGGCCACTCGCACATCAATTTTTCTCATGT
TagcagttgggtgtttaagataaaaacatcaatttttgcTCTACACAACA
ATTATTGTCGAAAGCGTTAATTTTTTAGATGATAAATAATGATGATTCAG
CATtagatctttgaaaaaattgttgtttttcaCCCAACTGGTTAGGTTGA
GCGGGTTGGTTCAAGTATGAGATACTAATTTTGAAGATCTATTTTTCATA
GTATCTGGTCACTCTTGCTGAAAAGGAcctgtttttgattttgttttgat
atgtttgGTAGTTGTTTTTTCCTGTATCATATCTTATGCTGGCTAGGCTA
Cgtatatcttccttcgtttcgagagtaaaactcctactcttcgcgatatg
agcactgctcttgttttgaatattaaaatcctttggataaatcgcatgcg
cactgaggtttaaATGATACAATAGAGAGTTtaaaaaacctaagccaatc
agctgtgtctTAAACATTATTTTCTATTATGtataaacctattaataagc
aattcccggtgggggctaCTAGTGGCCGCccatagcagtgcctatagtcC
AAGAGTAAGACCACGAAGGtgataaagatagatggagagtcaatgccttt
tgttctattctgatttatcatcggaagcaaagaGCTGTTtcgttgctttg
ggaataagatgattaattttgggtatactcgtgggaatatttaagatgaa
tgaaaaaacattacatttttaacaagtatattgaaatatgatagccttgt
catgaaaaattaaaaaaaacttcacataataagccctaataagcacaata
ctccaaacttctaggggaagctgcgcATAaagtgttacgattaggaacct
tgtatcgatcattttgtcagagtatgaaaaccgctgcccacttacacgtg
aagatttgaagataagaaactttcaatgataatgtgatgcaactttcaat
gttaacaaaatgccagcccaaaaatgtgtccctatgaaattaatatacta
TTTTAGTCTTACATCAGTTGGAACTATTTTGAATCGtattttaacaagga
ttttcggcaaaattaagtttttcaaaatcaaccaaagagtctctttctgt
tcttataaagttataaattgatgtttgatggtacatcaaagaaaagccac
tttaaatagatttataaaagatttcaacggccatctaggtcattaccgag
acgttttctctccatctatatctttattaccttcatggtaaGACCTAAAA
GCCTGgcgctgtctattgtgtagactactgGGAGCCAAGCTATTTAATTC
GAATGGAAATTATTAAGTTATCAAATTTTAGAGTAAtgaaaaattcataa
ttttttttagggATACTACAAAGTCCTTGGAAAAGGGTTATTACCAAAAC
AACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAAAGCAGAAGATAAA
ATCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTTAAATTGTGAATAA
AAAAATCTGGTGGGAATTGCTCTGTCTCTGTTATTTAGGGAATTGTTGTT
GAGTTTGATTGTACAATAAAGGNCTGTCTCTGTTATTTAAGGAATTGTTG
TTGAGTTTGATTGTACAATAAAGGAAGGTTCTATAATACTGCTATTTTCA
TCTTAAGTGCAATGAATGTGATAGCTTTTACAATGACAAGGCTTTGAAAT
GAAAGACtcgtgatatttttttgagTGTTAAGACCATCACTTGAATTATA
CAATCAAGCTTGATTTGTTTGTATCAGCCGTCTTTTTTTTCTGTATCAAC
TATTGAGCTTTGAGTAATTTTGTGCACTTGTATAAATTGCAATGGTGTGA
TGATTTCTTATATCTGTCAATCCTCTGAACAAAATGAAGATAGATTATAA
CGATCTGAACATTGCTAAGTACCTCTTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00073307-exon-scaffold_9-1491911889:220519..221393 | TCONS_00073307-exon-scaffold_9-1491911889:220519..221393 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1510915933:220519..221393 | TCONS_00073307-exon-scaffold_9-1510915933:220519..221393 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1575043694:220519..221393 | TCONS_00073307-exon-scaffold_9-1575043694:220519..221393 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1491911889:221554..221804 | TCONS_00073307-exon-scaffold_9-1491911889:221554..221804 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1510915933:221554..221804 | TCONS_00073307-exon-scaffold_9-1510915933:221554..221804 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1575043694:221554..221804 | TCONS_00073307-exon-scaffold_9-1575043694:221554..221804 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1491911889:223279..223850 | TCONS_00073307-exon-scaffold_9-1491911889:223279..223850 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1510915933:223279..223850 | TCONS_00073307-exon-scaffold_9-1510915933:223279..223850 | Clytia hemisphaerica | exon |
| TCONS_00073307-exon-scaffold_9-1575043694:223279..223850 | TCONS_00073307-exon-scaffold_9-1575043694:223279..223850 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:220519..223850 + |
Blast
BLAST of TCONS_00073307 vs. Swiss-Prot (Human)
Match: RL27A (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 2.101e-46 Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 2
Query: 941 MDKYHPGYFGKVGMRYFHKTLNKYHCPTVNCDKLWSLVSEQTRKNYAGKKEGPAPVIDCVQAGYYKVLGKGLLPKQPVIVKARFFSRKAEDKIKSVGGTCVLTA 1252
DKYHPGYFGKVGM+++H N+ CPTVN DKLW+LVSEQTR N A K G AP+ID V++GYYKVLGKG LPKQPVIVKA+FFSR+AE+KIKSVGG CVL A
Sbjct: 45 FDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
The following BLAST results are available for this feature:
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