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TCONS_00073306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073306
Unique NameTCONS_00073306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073306 ID=TCONS_00073306|Name=TCONS_00073306|organism=Clytia hemisphaerica|type=transcript|length=609bp
ATTTTCCCGAATCAAAATAAGCTTAAGgaacacaaaacaaaaagccAACA
CCTTCAAAGGAAAAGGAAGAAACAAAACCAAACTGAACCAAAAAGAAAAC
AACTAAGAATTGATGAAATGaatatccAAAGAACTGAAAATATAGCAGAG
GAGAAAGATGACGATGTCGAAACAGGTGGAGGGAATATTGAAATGCAAGC
AGAGGAAACCGGAGGTGAAACGACGGAGGGCGAAGAAGATGAGGAGGtcg
aagatgaagaagaaaacgaagaagaagacTTTTGTTTTGGTTGTGAACGC
GCCAGACCGCCAGCAGTAACAGACGATGATGATTTGGCATGGATACAATG
TGAGCAGCCTGATTGCGAAAAGTGGTACCACAAAGATTGTATGCCTGtaa
aatcgaaagcaaaacGTATCGCTAACGGCAGGAAGTGGTTTTGTTGTATC
TGAAATCTCTCCATAACCTAgcttttgattttatatttatCGTATGCGTT
TTACCATTTGATTCAGGGATTTTTCTTATTGTTTGATATTTCGTTAGTAG
GGAACTCAACTTTCTGTTTTATATCTTTATCACCCATGTCCAGTCCTAGC
TTCTTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00073306-protein

>TCONS_00073306-protein ID=TCONS_00073306-protein|Name=TCONS_00073306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
IFPNQNKLKEHKTKSQHLQRKRKKQNQTEPKRKQLRIDEMNIQRTENIAE
EKDDDVETGGGNIEMQAEETGGETTEGEEDEEVEDEEENEEEDFCFGCER
ARPPAVTDDDDLAWIQCEQPDCEKWYHKDCMPVKSKAKRIANGRKWFCCI
Run BLAST on NCBI

transcript from alignment at scaffold_9:154379..155403+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073306 ID=TCONS_00073306|Name=TCONS_00073306|organism=Clytia hemisphaerica|type=transcript|length=1025bp|location=Sequence derived from alignment at scaffold_9:154379..155403+ (Clytia hemisphaerica)
ATTTTCCCGAATCAAAATAAGCTTAAGGTATCGCTCTTTTTACGAGGACT TACTATCATTAAGGAATTCGAATTTCCGTTCATTTTCTTTCTTGTCCTGG CCTGAGAAGTACTTTAGCAAAGCGGAATATTTTGAATAATACATCCTAAA ATATATATCTTCTCTTTAAAACGTACCGTTACTTCATTGAATCTTCTCAC CAAATTCTCAggaacacaaaacaaaaagccAACACCTTCAAAGGAAAAGG AAGAAACAAAACCAAACTGAACCAAAAAGAAAACAACTAAGAATTGATGA AATGGTAAGAGTCAGTTTTGAAGCTCATGGATTTATAATATTCACAAGTT CCAATAAAAAATTAATCTCTTCATCAAATATTCTTTAACTttaaattatt cagaatatccAAAGAACTGAAAATATAGCAGAGGAGAAAGATGACGATGT CGAAACAGGTGGAGGGAATATTGAAATGCAAGCAGAGGAAACCGGAGGTG AAACGACGGAGGGCGAAGAAGATGAGGAGGtcgaagatgaagaagaaaac gaagaagaagacTTTTGTTTTGGTTGTAAGTAATTAATTCTACACCATTT GCCGTGAATGTTTTTCTTCTATTGCACTCTGTCAAATAATATCCTACAGT TacgattttgaaatatttataattCGATAAATGAAGTCTGCGTCAATCAC GTTTTCAGGTGAACGCGCCAGACCGCCAGCAGTAACAGACGATGATGATT TGGCATGGATACAATGTGAGCAGCCTGATTGCGAAAAGTGGTACCACAAA GATTGTATGCCTGtaaaatcgaaagcaaaacGTATCGCTAACGGCAGGAA GTGGTTTTGTTGTATCTGAAATCTCTCCATAACCTAgcttttgattttat atttatCGTATGCGTTTTACCATTTGATTCAGGGATTTTTCTTATTGTTT GATATTTCGTTAGTAGGGAACTCAACTTTCTGTTTTATATCTTTATCACC CATGTCCAGTCCTAGCTTCTTCTTG

Coding sequence (CDS) from alignment at scaffold_9:154379..155403+

>TCONS_00073306 ID=TCONS_00073306|Name=TCONS_00073306|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_9:154379..155403+ (Clytia hemisphaerica)
ATTTTCCCGAATCAAAATAAGCTTAAGgaacacaaaacaaaaagccAACA
CCTTCAAAGGAAAAGGAAGAAACAAAACCAAACTGAACCAAAAAGAAAAC
AACTAAGAATTGATGAAATGaatatccAAAGAACTGAAAATATAGCAGAG
GAGAAAGATGACGATGTCGAAACAGGTGGAGGGAATATTGAAATGCAAGC
AGAGGAAACCGGAGGTGAAACGACGGAGGGCGAAGAAGATGAGGAGGtcg
aagatgaagaagaaaacgaagaagaagacTTTTGTTTTGGTTGTGAACGC
GCCAGACCGCCAGCAGTAACAGACGATGATGATTTGGCATGGATACAATG
TGAGCAGCCTGATTGCGAAAAGTGGTACCACAAAGATTGTATGCCTGtaa
aatcgaaagcaaaacGTATCGCTAACGGCAGGAAGTGGTTTTGTTGTATC
TGAATTTTCCCGAATCAAAATAAGCTTAAGgaacacaaaacaaaaagccA
ACACCTTCAAAGGAAAAGGAAGAAACAAAACCAAACTGAACCAAAAAGAA
AACAACTAAGAATTGATGAAATGaatatccAAAGAACTGAAAATATAGCA
GAGGAGAAAGATGACGATGTCGAAACAGGTGGAGGGAATATTGAAATGCA
AGCAGAGGAAACCGGAGGTGAAACGACGGAGGGCGAAGAAGATGAGGAGG
tcgaagatgaagaagaaaacgaagaagaagacTTTTGTTTTGGTTGTGAA
CGCGCCAGACCGCCAGCAGTAACAGACGATGATGATTTGGCATGGATACA
ATGTGAGCAGCCTGATTGCGAAAAGTGGTACCACAAAGATTGTATGCCTG
taaaatcgaaagcaaaacGTATCGCTAACGGCAGGAAGTGGTTTTGTTGT
ATCTGAATTTTCCCGAATCAAAATAAGCTTAAGgaacacaaaacaaaaag
ccAACACCTTCAAAGGAAAAGGAAGAAACAAAACCAAACTGAACCAAAAA
GAAAACAACTAAGAATTGATGAAATGaatatccAAAGAACTGAAAATATA
GCAGAGGAGAAAGATGACGATGTCGAAACAGGTGGAGGGAATATTGAAAT
GCAAGCAGAGGAAACCGGAGGTGAAACGACGGAGGGCGAAGAAGATGAGG
AGGtcgaagatgaagaagaaaacgaagaagaagacTTTTGTTTTGGTTGT
GAACGCGCCAGACCGCCAGCAGTAACAGACGATGATGATTTGGCATGGAT
ACAATGTGAGCAGCCTGATTGCGAAAAGTGGTACCACAAAGATTGTATGC
CTGtaaaatcgaaagcaaaacGTATCGCTAACGGCAGGAAGTGGTTTTGT
TGTATCTGAATTTTCCCGAATCAAAATAAGCTTAAGgaacacaaaacaaa
aagccAACACCTTCAAAGGAAAAGGAAGAAACAAAACCAAACTGAACCAA
AAAGAAAACAACTAAGAATTGATGAAATGaatatccAAAGAACTGAAAAT
ATAGCAGAGGAGAAAGATGACGATGTCGAAACAGGTGGAGGGAATATTGA
AATGCAAGCAGAGGAAACCGGAGGTGAAACGACGGAGGGCGAAGAAGATG
AGGAGGtcgaagatgaagaagaaaacgaagaagaagacTTTTGTTTTGGT
TGTGAACGCGCCAGACCGCCAGCAGTAACAGACGATGATGATTTGGCATG
GATACAATGTGAGCAGCCTGATTGCGAAAAGTGGTACCACAAAGATTGTA
TGCCTGtaaaatcgaaagcaaaacGTATCGCTAACGGCAGGAAGTGGTTT
TGTTGTATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045476XLOC_045476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073306-exon-scaffold_9-1491911889:154379..154405TCONS_00073306-exon-scaffold_9-1491911889:154379..154405Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1510915933:154379..154405TCONS_00073306-exon-scaffold_9-1510915933:154379..154405Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1575043694:154379..154405TCONS_00073306-exon-scaffold_9-1575043694:154379..154405Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1491911889:154590..154682TCONS_00073306-exon-scaffold_9-1491911889:154590..154682Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1510915933:154590..154682TCONS_00073306-exon-scaffold_9-1510915933:154590..154682Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1575043694:154590..154682TCONS_00073306-exon-scaffold_9-1575043694:154590..154682Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1491911889:154782..154953TCONS_00073306-exon-scaffold_9-1491911889:154782..154953Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1510915933:154782..154953TCONS_00073306-exon-scaffold_9-1510915933:154782..154953Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1575043694:154782..154953TCONS_00073306-exon-scaffold_9-1575043694:154782..154953Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1491911889:155087..155403TCONS_00073306-exon-scaffold_9-1491911889:155087..155403Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1510915933:155087..155403TCONS_00073306-exon-scaffold_9-1510915933:155087..155403Clytia hemisphaericaexon
TCONS_00073306-exon-scaffold_9-1575043694:155087..155403TCONS_00073306-exon-scaffold_9-1575043694:155087..155403Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073306-proteinTCONS_00073306-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:154379..155403 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.114031 0.106754 0 0 0 0.11814 0.353927 0 0 0 0 0.0682449 0 0.197323 0 0 0 0 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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