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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073305 ID=TCONS_00073305|Name=TCONS_00073305|organism=Clytia hemisphaerica|type=transcript|length=1052bp
CAGCAGTTCCGTTTTTTTATGCAGAATGATGGACCCAACGTAAACGATCA
CGATTTTCCAAATCCAGGTTACCTATTAGTGCCATCGGGTTACTTACAGC
TTCTCCCCAAGAAATCAGAGGAAACGGCCAGCAGTGACCACGACGAAGAT
ATCATGGATGAGCCTTATGATGTCATCGGGAATGAAACAACAAACGCGAA
TGAGATAGCAGATGTCGGAGAAACAGAAAGCATCAGTAATCGTAGGAAGG
ATAAATTAGGCCGTGCACACTACCAACGTTTAGAAGCAGGTCCAGGTCTT
ATCAGATTGAGAGCATGCAAATACGACACGTCAACTGGTCAAACTCATTC
GAATGATATCTTGCCTATCCTATCCTCGCAATTGAAAAACGATAGAAAGG
GGGTTGCATTCCTGAAGGTAGACAACGGATCCGATTGGAACTTACACTCC
CTTGTGAACTCCGTTTATCTCTGCCGTGTGTTTAAGGTATTATTTATCAT
TTTGAGGCACAAAAATTAAAAAGACGACGGCCCTGTCTCACGGAGTCAAA
GCTGCCTATTGGAATATTGAAATATCTTTAAATGGCCCATTAAGATTTAT
ATTTAGTGTTCTTACATTGTAAAATTGATTCATTTTGAAAACCTTTTTCA
GTGAAAATGACCATTTTTACTTTGTTTTCAAATATTTGACTGCCTCTTGT
TTATATCGTTATTTAAGGATTCCAAACTTGACGTTTTTGGTATTGTCAGC
TATGCAGCCAAATACTCCGCGTTCAATAACATCGAGCACCTGTGGAGTCC
AATGAGTAAACTTCTAAGTTCCGTAATTTTACCATCAGTTCTTGAGGGTG
ATGCAGATGTTCCTTACAAGCTCACTCATTTGTCGAAGGCTCAAATCCAG
GAAAAAGAAGAAAAGGTATTCGATCAAGCGATGGAACTAGTCGCATCACG
ATATTGGGGTGAAGCAGAATTCAACGGCAGTCTCGTCACAGTGAGATACA
AACCTTGCTTGGATCAGGAAACTCCCTATCATGACTATGCTGTTGTGCAT
AA Run BLAST on NCBI protein sequence of TCONS_00073305-protein >TCONS_00073305-protein ID=TCONS_00073305-protein|Name=TCONS_00073305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
QQFRFFMQNDGPNVNDHDFPNPGYLLVPSGYLQLLPKKSEETASSDHDED
IMDEPYDVIGNETTNANEIADVGETESISNRRKDKLGRAHYQRLEAGPGL
IRLRACKYDTSTGQTHSNDILPILSSQLKNDRKGVAFLKVDNGSDWNLHS
LVNSVYLCRVFKVLFIILRHKN Run BLAST on NCBI transcript from alignment at scaffold_9:152296..153563+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073305 ID=TCONS_00073305|Name=TCONS_00073305|organism=Clytia hemisphaerica|type=transcript|length=1268bp|location=Sequence derived from alignment at scaffold_9:152296..153563+ (Clytia hemisphaerica)
CAGCAGTTCCGTTTTTTTATGCAGAATGATGGACCCAACGTAAACGATCA
CGATTTTCCAAATCCAGGTTACCTATTAGTGCCATCGGGTTACTTACAGC
TTCTCCCCAAGAAATCAGAGGAAACGGCCAGCAGTGACCACGACGAAGAT
ATCATGGATGAGCCTTATGATGTCATCGGGAATGAAACAACAAACGCGAA
TGAGATAGCAGATGTCGGAGAAACAGAAAGCATCAGTAATCGTAGGAAGG
ATAAATTAGGCCGTGCACACTACCAACGTTTAGAAGCAGGTCCAGGTCTT
ATCAGATTGAGAGCATGCAAATACGACACGTCAACTGGTCAAACTCATTC
GAATGATATCTTGCCTATCCTATCCTCGCAATTGAAAAACGATAGAAAGG
GGGTTGCATTCCTGAAGGTAGACAACGGATCCGATTGGAACTTACACTCC
CTTGTGAACTCCGTTTATCTCTGCCGTGTGTTTAAGGTATTATTTATCAT
TTTGAGGCACAAAAATTAAAAAGACGACGGCCCTGTCTCACGGAGTCAAA
GCTGCCTATTGGAATATTGAAATATCTTTAAATGGCCCATTAAGATTTAT
ATTTAGTGTTCTTACATTGTAAAATTGATTCATTTTGAAAACCTTTTTCA
GTGAAAATGACCATTTTTACTTTGTTTTCAAATATTTGACTGCCTCTTGT
TTATATCGTTATTTAAGGATTCCAAACTTGACGTTTTTGGTATTGTCAGC
TATGCAGCCAAATACTCCGCGTTCAATAACATCGAGCACCTGTGGAGTCC
AATGAGTAAACTTCTAAGTTCCGTAATTTTACCATCAGTTCTTGAGGGTG
ATGCAGATGTTCCTTACAAGCTCACTCATTTGTCGAAGGCTCAAATCCAG
GAAAAAGAAGAAAAGGTTTGCGTGTATAAAGGATGTCAGAAGTTTATTTT
TCAACCATCTTCAAACTATTTGAAAGTATTAATTGTCCGTTGATAATTGT
CCTGAAAGATATTTAATGAAAGTAAGGAAAGAGAGATCGATAAAAAAAGT
TCATACCCCGTAAATTTTAGAGGCCTCCTCGGTTTCGTTGGCTTCGAAAC
TCCAATGAAGCAATTGTTTTTCATGTTTAAGGTATTCGATCAAGCGATGG
AACTAGTCGCATCACGATATTGGGGTGAAGCAGAATTCAACGGCAGTCTC
GTCACAGTGAGATACAAACCTTGCTTGGATCAGGAAACTCCCTATCATGA
CTATGCTGTTGTGCATAA Coding sequence (CDS) from alignment at scaffold_9:152296..153563+ >TCONS_00073305 ID=TCONS_00073305|Name=TCONS_00073305|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_9:152296..153563+ (Clytia hemisphaerica)
CAGCAGTTCCGTTTTTTTATGCAGAATGATGGACCCAACGTAAACGATCA
CGATTTTCCAAATCCAGGTTACCTATTAGTGCCATCGGGTTACTTACAGC
TTCTCCCCAAGAAATCAGAGGAAACGGCCAGCAGTGACCACGACGAAGAT
ATCATGGATGAGCCTTATGATGTCATCGGGAATGAAACAACAAACGCGAA
TGAGATAGCAGATGTCGGAGAAACAGAAAGCATCAGTAATCGTAGGAAGG
ATAAATTAGGCCGTGCACACTACCAACGTTTAGAAGCAGGTCCAGGTCTT
ATCAGATTGAGAGCATGCAAATACGACACGTCAACTGGTCAAACTCATTC
GAATGATATCTTGCCTATCCTATCCTCGCAATTGAAAAACGATAGAAAGG
GGGTTGCATTCCTGAAGGTAGACAACGGATCCGATTGGAACTTACACTCC
CTTGTGAACTCCGTTTATCTCTGCCGTGTGTTTAAGGTATTATTTATCAT
TTTGAGGCACAAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073305-exon-scaffold_9-1491911889:152296..153210 | TCONS_00073305-exon-scaffold_9-1491911889:152296..153210 | Clytia hemisphaerica | exon |
| TCONS_00073305-exon-scaffold_9-1510915933:152296..153210 | TCONS_00073305-exon-scaffold_9-1510915933:152296..153210 | Clytia hemisphaerica | exon |
| TCONS_00073305-exon-scaffold_9-1575043694:152296..153210 | TCONS_00073305-exon-scaffold_9-1575043694:152296..153210 | Clytia hemisphaerica | exon |
| TCONS_00073305-exon-scaffold_9-1491911889:153427..153563 | TCONS_00073305-exon-scaffold_9-1491911889:153427..153563 | Clytia hemisphaerica | exon |
| TCONS_00073305-exon-scaffold_9-1510915933:153427..153563 | TCONS_00073305-exon-scaffold_9-1510915933:153427..153563 | Clytia hemisphaerica | exon |
| TCONS_00073305-exon-scaffold_9-1575043694:153427..153563 | TCONS_00073305-exon-scaffold_9-1575043694:153427..153563 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:152296..153563 + |
Blast
The following BLAST results are available for this feature:
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