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TCONS_00073305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073305
Unique NameTCONS_00073305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1052

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073305 ID=TCONS_00073305|Name=TCONS_00073305|organism=Clytia hemisphaerica|type=transcript|length=1052bp
CAGCAGTTCCGTTTTTTTATGCAGAATGATGGACCCAACGTAAACGATCA
CGATTTTCCAAATCCAGGTTACCTATTAGTGCCATCGGGTTACTTACAGC
TTCTCCCCAAGAAATCAGAGGAAACGGCCAGCAGTGACCACGACGAAGAT
ATCATGGATGAGCCTTATGATGTCATCGGGAATGAAACAACAAACGCGAA
TGAGATAGCAGATGTCGGAGAAACAGAAAGCATCAGTAATCGTAGGAAGG
ATAAATTAGGCCGTGCACACTACCAACGTTTAGAAGCAGGTCCAGGTCTT
ATCAGATTGAGAGCATGCAAATACGACACGTCAACTGGTCAAACTCATTC
GAATGATATCTTGCCTATCCTATCCTCGCAATTGAAAAACGATAGAAAGG
GGGTTGCATTCCTGAAGGTAGACAACGGATCCGATTGGAACTTACACTCC
CTTGTGAACTCCGTTTATCTCTGCCGTGTGTTTAAGGTATTATTTATCAT
TTTGAGGCACAAAAATTAAAAAGACGACGGCCCTGTCTCACGGAGTCAAA
GCTGCCTATTGGAATATTGAAATATCTTTAAATGGCCCATTAAGATTTAT
ATTTAGTGTTCTTACATTGTAAAATTGATTCATTTTGAAAACCTTTTTCA
GTGAAAATGACCATTTTTACTTTGTTTTCAAATATTTGACTGCCTCTTGT
TTATATCGTTATTTAAGGATTCCAAACTTGACGTTTTTGGTATTGTCAGC
TATGCAGCCAAATACTCCGCGTTCAATAACATCGAGCACCTGTGGAGTCC
AATGAGTAAACTTCTAAGTTCCGTAATTTTACCATCAGTTCTTGAGGGTG
ATGCAGATGTTCCTTACAAGCTCACTCATTTGTCGAAGGCTCAAATCCAG
GAAAAAGAAGAAAAGGTATTCGATCAAGCGATGGAACTAGTCGCATCACG
ATATTGGGGTGAAGCAGAATTCAACGGCAGTCTCGTCACAGTGAGATACA
AACCTTGCTTGGATCAGGAAACTCCCTATCATGACTATGCTGTTGTGCAT
AA
Run BLAST on NCBI

protein sequence of TCONS_00073305-protein

>TCONS_00073305-protein ID=TCONS_00073305-protein|Name=TCONS_00073305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
QQFRFFMQNDGPNVNDHDFPNPGYLLVPSGYLQLLPKKSEETASSDHDED
IMDEPYDVIGNETTNANEIADVGETESISNRRKDKLGRAHYQRLEAGPGL
IRLRACKYDTSTGQTHSNDILPILSSQLKNDRKGVAFLKVDNGSDWNLHS
LVNSVYLCRVFKVLFIILRHKN
Run BLAST on NCBI

transcript from alignment at scaffold_9:152296..153563+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073305 ID=TCONS_00073305|Name=TCONS_00073305|organism=Clytia hemisphaerica|type=transcript|length=1268bp|location=Sequence derived from alignment at scaffold_9:152296..153563+ (Clytia hemisphaerica)
CAGCAGTTCCGTTTTTTTATGCAGAATGATGGACCCAACGTAAACGATCA CGATTTTCCAAATCCAGGTTACCTATTAGTGCCATCGGGTTACTTACAGC TTCTCCCCAAGAAATCAGAGGAAACGGCCAGCAGTGACCACGACGAAGAT ATCATGGATGAGCCTTATGATGTCATCGGGAATGAAACAACAAACGCGAA TGAGATAGCAGATGTCGGAGAAACAGAAAGCATCAGTAATCGTAGGAAGG ATAAATTAGGCCGTGCACACTACCAACGTTTAGAAGCAGGTCCAGGTCTT ATCAGATTGAGAGCATGCAAATACGACACGTCAACTGGTCAAACTCATTC GAATGATATCTTGCCTATCCTATCCTCGCAATTGAAAAACGATAGAAAGG GGGTTGCATTCCTGAAGGTAGACAACGGATCCGATTGGAACTTACACTCC CTTGTGAACTCCGTTTATCTCTGCCGTGTGTTTAAGGTATTATTTATCAT TTTGAGGCACAAAAATTAAAAAGACGACGGCCCTGTCTCACGGAGTCAAA GCTGCCTATTGGAATATTGAAATATCTTTAAATGGCCCATTAAGATTTAT ATTTAGTGTTCTTACATTGTAAAATTGATTCATTTTGAAAACCTTTTTCA GTGAAAATGACCATTTTTACTTTGTTTTCAAATATTTGACTGCCTCTTGT TTATATCGTTATTTAAGGATTCCAAACTTGACGTTTTTGGTATTGTCAGC TATGCAGCCAAATACTCCGCGTTCAATAACATCGAGCACCTGTGGAGTCC AATGAGTAAACTTCTAAGTTCCGTAATTTTACCATCAGTTCTTGAGGGTG ATGCAGATGTTCCTTACAAGCTCACTCATTTGTCGAAGGCTCAAATCCAG GAAAAAGAAGAAAAGGTTTGCGTGTATAAAGGATGTCAGAAGTTTATTTT TCAACCATCTTCAAACTATTTGAAAGTATTAATTGTCCGTTGATAATTGT CCTGAAAGATATTTAATGAAAGTAAGGAAAGAGAGATCGATAAAAAAAGT TCATACCCCGTAAATTTTAGAGGCCTCCTCGGTTTCGTTGGCTTCGAAAC TCCAATGAAGCAATTGTTTTTCATGTTTAAGGTATTCGATCAAGCGATGG AACTAGTCGCATCACGATATTGGGGTGAAGCAGAATTCAACGGCAGTCTC GTCACAGTGAGATACAAACCTTGCTTGGATCAGGAAACTCCCTATCATGA CTATGCTGTTGTGCATAA

Coding sequence (CDS) from alignment at scaffold_9:152296..153563+

>TCONS_00073305 ID=TCONS_00073305|Name=TCONS_00073305|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_9:152296..153563+ (Clytia hemisphaerica)
CAGCAGTTCCGTTTTTTTATGCAGAATGATGGACCCAACGTAAACGATCA
CGATTTTCCAAATCCAGGTTACCTATTAGTGCCATCGGGTTACTTACAGC
TTCTCCCCAAGAAATCAGAGGAAACGGCCAGCAGTGACCACGACGAAGAT
ATCATGGATGAGCCTTATGATGTCATCGGGAATGAAACAACAAACGCGAA
TGAGATAGCAGATGTCGGAGAAACAGAAAGCATCAGTAATCGTAGGAAGG
ATAAATTAGGCCGTGCACACTACCAACGTTTAGAAGCAGGTCCAGGTCTT
ATCAGATTGAGAGCATGCAAATACGACACGTCAACTGGTCAAACTCATTC
GAATGATATCTTGCCTATCCTATCCTCGCAATTGAAAAACGATAGAAAGG
GGGTTGCATTCCTGAAGGTAGACAACGGATCCGATTGGAACTTACACTCC
CTTGTGAACTCCGTTTATCTCTGCCGTGTGTTTAAGGTATTATTTATCAT
TTTGAGGCACAAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045475XLOC_045475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073305-proteinTCONS_00073305-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073305-exon-scaffold_9-1491911889:152296..153210TCONS_00073305-exon-scaffold_9-1491911889:152296..153210Clytia hemisphaericaexon
TCONS_00073305-exon-scaffold_9-1510915933:152296..153210TCONS_00073305-exon-scaffold_9-1510915933:152296..153210Clytia hemisphaericaexon
TCONS_00073305-exon-scaffold_9-1575043694:152296..153210TCONS_00073305-exon-scaffold_9-1575043694:152296..153210Clytia hemisphaericaexon
TCONS_00073305-exon-scaffold_9-1491911889:153427..153563TCONS_00073305-exon-scaffold_9-1491911889:153427..153563Clytia hemisphaericaexon
TCONS_00073305-exon-scaffold_9-1510915933:153427..153563TCONS_00073305-exon-scaffold_9-1510915933:153427..153563Clytia hemisphaericaexon
TCONS_00073305-exon-scaffold_9-1575043694:153427..153563TCONS_00073305-exon-scaffold_9-1575043694:153427..153563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:152296..153563 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0410396 0 0.046619 0 0 0.054107 0 0.0354643 0 0 0 0.111958 0 0 0.0256455 0 0 0 0 0 0 0 0 0.0451849 0.0403265 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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