TCONS_00073299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073299
Unique NameTCONS_00073299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073299 ID=TCONS_00073299|Name=TCONS_00073299|organism=Clytia hemisphaerica|type=transcript|length=2643bp
GGatgttgttgttgatttttgtGTTTGTCACCCTTGCTTGTTCGTCACCA
GTCCTCTCAAAACCACCTTCCATCAACTCCTCCATACGAAACCTTCAAGA
TGATCACGTGGTAGTGCTTCAACAACAAAGAACTTCTTTCAAACAAGAAC
AGAAATTTCATCCACCACAACAAAGTGATGAGAACACATCAAAAACCATC
CATAAATTACGTTTGAAATTCCGCAAACTCCGTGATCGAGTACGACAACT
GGAAGAAAAGCTGGAAAGATTGACTTTATCGCAATATAAGTCATCGTATA
TTCAAGGGCCAAAGgGTGAGAAAGGTGACAGAGGACCCAGGGGACCGACA
GGTGCAAGAGGATCAATGGGTTTCCGAGGACTAACAGGACTACCAGGGCG
TGATGGATCGTTCAGCCAACTACCATCCTGCAccccaaaacaatatttgt
cttCCAATGGAAAGAGGTTGATCTGCTTTACTTTCGagaaAGACATCCAA
CCAAACAATGGTAACGGAGGAAACAGCGGAAAAGAACGATCAACGGAACA
GCCGTCGTCAGGGGGGAATACGGACGACAGTACCACCGAAGAGACAGTCA
ACCCTGATGGAGGTGTGGATGAAGGTCTGGTTGGAAAGATCGACAAATTC
TCAGAGAAAAAtcgcatccaaaatttttatgCCGATACCTGGGATTTACA
TTCATTCATTTGGGATCAAAATACATATCTGGGTGTTTCCCAACTTAGCA
CCCAgtcttttattttgaagaaatgGGTACAGAATGAGTAAGTATCTTAC
AGGTTAAAAAGAGGTGGTCTAGCATTAAAGCTTCAATTTCCTGATGACAA
AGAATAATTTGCCATCAATTTTTATGCCATCTCTTATGTTCACGACTTGG
AAACGTCATAATCATATCCCGTTTTAATAGTGAATCCTGACTAATTTCAA
AGGCCATAAAACTGTATAAGGATTACTTTTTTAGAAGAAGAAGATTATTC
ACAATTTAGTAATTATTTCAACCATTTCACACAACACAGGTTTATTGAGA
AGGCCATTCTTACGGTACCGAACGCAAGGAAATGGACGTCATTCGAATGG
CAATCAGAGCTTTACATCGTCATCGCCTGCAACACGAAACCCGCCCCGGG
CGGTGGCGCCGCTTACTCTTATGTTTACAAAATGAAGTATGATGAAATCA
CTCTTTTCCAAAGATTGGAAACCAGGACTGCTTTTGGTGTGGATGCCATT
GAAATTGGAAATGAGCTATACCTTGTTTTCGCGTACTTGCTTGGCGTTGG
GAATGATGCTTATTCAGATGTATTCAAATGGTCGCAAGGAGAATTCAAGA
AGGATCACTTGATCCCTGTGACGGGTACCGACGTTGATACTTTCAGTGTG
GGTTCAGAGCATTTTGCTGCTGTTGTGGGTGTGACGTCACGTGAcccatt
tgtttatcttttgaaatataatGGAACGCAATTTGTGACCCATTACAACA
TTCCGATGGATTCGCGACCGTACGGTCTTACGTTCGTCCGTACCCGGAAC
GAATACTTCCTGGCGGTAGCGTTTTACGACTTGCGACAATCTCTCATCTT
GAAGTGGAATGGTGTGACTTTTCAAACGAACCAAAAGCTTGTTTCATCAA
AGGCGAGAGATTTCGCAACAACAACCATCAACCGAGCAGGGCGAGAAATC
ACGTATCTGGCACTTGTAAACTACGAAGGGAAACCCATCATTTATATTTA
TAATgaacaaacaaaacaatttggaaAACTCCAACAAACGAACTCTAAGT
GGACAAGAGATATTGAATTTTTGCGTGTACCAAATAGTATTCATTTGAAT
TTAGCAGTAGCTTCAACTCGAGAGATTGTGATATATAAAGGAAACACTAC
TTAAAGAGATTTCTCTGGTTGAGAACATGATTTAGAGGTGCGAAAAATCA
TTCGTTGGAGGTGCAAAGAACCAATCATCCAAGATTCTGAAAGGGAAATA
CATGATCGAGCAGAATGCTGTGTCTTAACCCTGTACTAAATTACACAAGC
TTGATATCTTTGTTTCGAGATGGAAACAGTTATTATCGAATAACTGAAAA
GCGAAAATGAGCTGTCATACATTATCAGAGTTTTAAAGGATGTACAATAA
ATAAATGAATGGATAGAGGGAATGAATGAATGTATAAAAGTACAATAGCC
AAAGAATAGTTTCTATGAGGCTTTAAAATTGCATCATTGATGTTGTTGAG
AGCGAACATttaataaaaatggaaaaagctggaaaaaatcattccaaaca
aacaaagaaatgaAGTGTTGTTATCCTGCGACCGACTTTTTATCTTAATT
AAAAGTAGAATCTTCTTTTTACGTATCCATTAAAActtcaaaaggaaaaa
aattgcaaagaatAAGACTTAAGAGATTCTTAATttatatattattatga
taattATTTGGCATAATTATTTCATGCTCAAAATATTATGtacatattat
tttcttttatatttttaaattccaTCAATGTCACAGTATTCATCACTATT
GTTTTCTCCATTGAATCTAATACCTTCACAGTTTCCATCCACAAAAGTTA
AGTCCCAATAGACATTTGACCATCCCCATAAAATGTAAACCTG
Run BLAST on NCBI

transcript from alignment at scaffold_9:103031..108485+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073299 ID=TCONS_00073299|Name=TCONS_00073299|organism=Clytia hemisphaerica|type=transcript|length=5455bp|location=Sequence derived from alignment at scaffold_9:103031..108485+ (Clytia hemisphaerica)
GGatgttgttgttgatttttgtGTTTGTCACCCTTGCTTGTTCGTCACCA
GTCCTCTCAAAACCACCTTCCATCAACTCCTCCATACGAAACCTTCAAGA
TGATCACGTGGTAGTGCTTCAACAACAAAGAACTTCTTTCAAACAAGAAC
AGAAATTTCATCCACCACAACAAAGTGATGAGAACACATCAAAAACCATC
CATAAATTACGTTTGAAATTCCGCAAACTCCGTGTACGTTTGAACAACAA
TATCTGGAAAGCGTGATTTATTCCACTGCTGAGTCGCTAATTCAATTTTC
TGATACGACTTCTGGTTCACTTAAGTAGTGTGTTATAGAGAGAGAGACTT
TGGATATACTGTGCTGGAACATTTGTACGAGTAGAAGCTCTTAATGAAGC
TTTTGCTTTTTCAGCAAGATTTCCAGTTCTGTTCGGTGAgccttttcaaa
tgaaatttttattcttGTGTTTTTAGGATCGAGTACGACAACTGGAAGAA
AAGCTGNTGAgcgttttcaaatgaaatttttattcttGTGTTTTTAGGAT
CGAGTACGACAACTGGAAGAAAAGCTGGAAAGATTGACTTTATCGCAATA
TAAGTCATCGTATATTCAAGGGCCAAAGGTAGGAGTTGATTATATTCACT
ACAAGTTCTTGAGAGCGTGTATCAAACAACTTTGTGATACAAAGAGTGTG
TTTCCCTGGGAAAGAATCTTTGTTACCAAAAGTACGGTGTATACTGTCGA
GATCAAAGTGTGCTCGAAGATTCAATTACTTTGGTCTAATAATAACAAAG
GTTAGAAACTTATGCACTTTGTATTTGGGGCAAACCTTGCTCAGCtttga
aaacagaaaaaaaacaagcaacgtgattttcattttcaacttttattcat
atgaaaaattatttttaccatGAATTTAAAAATAAGATAATGTTGACCTT
TCTATATGAATCATAAAAGGTCGACgacttttcattgaaataaTTAGCAC
TTGAAAGCTATTAAAAGCATAATTAATGATACTTTGGCGCCTCATCTTTG
TCAAAGAAAATTAGTCCCATATCCGCAGGGGTTGTTCATTGAACAATATC
CTTAATGATGTATCCATCACATTATTATTaccctttctttgttttccttt
tttccaggGTGAGAAAGGTGACAGAGGACCCAGGGTAAGtttgtcttttc
tttttctgcAAAATTTACTGCATTTTGAAGACCATTTTAGGTATCACTTG
AGGATAACAAACTTACTTGGCatcaattttaaggcttttcccAAAAGGCA
CAAACATCTCATTAACATTCATTGACGCTCGCTATCTGGACGTCTCAAAT
cgttaaaatcatttttttttgtgttgatGAGAATAAGAGATATCAAGTTT
TACATCGCTTTCATTGTGGCCCATgttaaacaaaagaaacctcAATTAAT
CTGAGCTGTTAGTGAAAGAAACATTCAGCGAAAGCATAAGATTAGTTCAG
CTTGGTACCAAAAGTCCTGATGCAATACAAAAAACCGTTATACGCGCTTC
ATTTGATAAGCTTCTAAAAGCCTTCATGTAAATCAAAAACTCCTTCAATC
AAATTATAATGCCATGGTGACAAAGGCATCAACATGACGTCAGATGAATG
TCTCAGAGACATAACTTTTGTGATGTCATCAACAAAAGTGTCCTTTATAC
CACCGCGTAGTCAATAAGCATCTTAATTCAATTTTTGGTACTTTCTTGaa
atagcattttttacaaaagagtGAATAGACAATGATTTATGTTTTCTTAT
GACAGTAAAGCTTTTAGCTTGCTCGTGTCAGGGCGCCAATGCAAATTGAT
TGATCGATCTGGTTcaattaaaactcaaaaagatcATCCAGTAGCATACC
CTTTTTGTCTCGTAAGCCGCTTTTTTGGCCaggaaatttctttcaataaa
cTAGACTCGCCTTTACCATTTGCTCAATACAAAGGAAGAGAATTCGATTT
CCAGAATAGTCCATTTCTCACTTGAGAAATCAAATCATACAAAGCTGAAC
TAAACGtttatttcatttcattcaGGGACCGACAGGTGCAAGAGGATCAA
TGGGTTTCCGAGGACTAACAGGACTACCAGGGCGTGATGGATCGTTCAGC
CAACTACCATCCTGCAccccaaaacaatatttgtcttCCAATGGAAAGAG
GTTGATCTGCTTTACTTTCGGTAAGTGAAATTTCGCTTCAATTGTTATAT
AGTTTCAATCTCATCATCATATATGTCCAAAATGGTTCTGCTTTGTGTAA
GCCAAAACAAATAAAAGTGCTCAATGTTAATGATAACAGAGCTTTatact
agtttgagtaaagaaaacgattaaagttaatttcaaactcaaaatgCCAA
AATGGTTCTTCCAACATGAGATCTTTGAAGTAAACAAATTTCTTAATCAG
ATTTTATAAAAGTGGCGTACCACTCACTGACTTGAAATCACTACCAGTGA
TACCTCTACATATGTTAACAAGATGCTCCATTAAAAATATAAGTCCttga
ataaattgaaattgaaacaacATGGCTATCTTGACGTCGAACAAACTAAT
TCTCGAtatgaatttttcattttcagagaaAGACATCCAACCAAACAATG
GTAACGGAGGAAACAGCGGAAAAGAACGATCAACGGAACAGCCGTCGTCA
GGGGGGAATACGGACGACAGTACCACCGAAGAGACAGTCAACCCTGATGG
AGGTGTGGATGAAGGTAATGGAATAAGGCTACCGAACCCAACTATAAACG
AGGGTAAGAACTCATCCTCAACTCTTACACAACACACTAACCCCTCTAAC
ACTTTAAACCTTGTCTTGTTGAGAATAATCTCTAACTAACCTTGTTAAGT
ATTAATCTATTCAAGCTATGTTTTCGCTTAAAAAACTAGATTGACGAAGG
AAACATTTTTGGCCACAAAGTCTGCACACAGCAAGATTATTCATATTCCA
AAAATAACCGAATATAACTCCTCTTTACAGGTCTGGTTGGAAAGATCGAC
AAATTCTCAGAGAAAAAtcgcatccaaaatttttatgCCGATACCTGGGA
TTTACATTCATTCATTTGGGATCAAAATACATATCTGGGTGTTTCCCAAC
TTAGCACCCAgtcttttattttgaagaaatgGGTACAGAATGAGTAAGTA
TCTTACAGGTTAAAAAGAGGTGGTCTAGCATTAAAGCTTCAATTTCCTGA
TGACAAAGAATAATTTGCCATCAATTTTTATGCCATCTCTTATGTTCACG
ACTTGGAAACGTCATAATCATATCCCGTTTTAATAGTGAATCCTGACTAA
TTTCAAAGGCCATAAAACTGTATAAGGATTACTTTTTTAGAAGAAGAAGA
TTATTCACAATTTAGTAATTATTTCAACCATTTCACACAACACAGGTTTA
TTGAGAAGGCCATTCTTACGGTACCGAACGCAAGGAAATGGACGTCATTC
GAATGGCAATCAGAGCTTTACATCGTCATCGCCTGCAACACGAAACCCGC
CCCGGGCGGTGGCGCCGCTTACTCTTATGTTTACAAAATGAAGTATGATG
AAATCACTCTTTTCCAAAGATTGGAAACCAGGACTGCTTTTGGTGTGGAT
GCCATTGAAATTGGTGAGTTGTTAACATGAGAAAATTGATATAGATATGA
AAGATGCTAGACTCTTTTTTTCTTCCATAAAGATAACTATAATATACAAC
GAATACATTAAAACTAGATATTTGTAAGTGGAATTCGTAATCATTGAGAC
TGAAAATATTATGGCGCATTTGATTTCTAATCATAATTTTCTCTTTTCAT
GAACAGGAAATGAGCTATACCTTGTTTTCGCGTACTTGCTTGGCGTTGGG
AATGATGCTTATTCAGATGTATTCAAATGGTCGCAAGGAGAATTCAAGAA
GGATCACTTGATCCCTGTGACGGGTACCGACGTTGATACTTTCAGTGTGG
GTTCAGAGCATTTTGCTGCTGTTGTGGGTGTGACGTCACGTGAcccattt
gtttatcttttgaaatataatGGAACGCAATTTGTGACCCATTACAACAT
TCCGATGGATTCGCGACCGTACGGTCTTACGTTCGTCCGTACCCGGAACG
AATACTTCCTGGCGGTAGCGTTTTACGACTTGCGACAATCTCTCATCTTG
AAGTGGAATGGTGTGACTTTTCAAACGAACCAAAAGCTTGTTTCATCAAA
GGTAAAATTCATATCACCATCAGTCCTCTGACCGGCAGAGAATCAAATTA
CTCTCCGAGCTATTTAATTCCACACAACGAATAAGAGAAAGATCAGCATC
CTAGGTCACAAAAATCTTACTACTTGAAATAAATCTCAAAGCCATGAATT
AACGGAATAATGATGAGTAGAATCAGTGCATGATTTCCTCAACCCTTTTC
TTTTCGTTTTATAGGCGAGAGATTTCGCAACAACAACCATCAACCGAGCA
GGGCGAGAAATCACGTATCTGGCACTTGTAAACTACGAAGGGAAACCCAT
CATTTATATTTATAATgaacaaacaaaacaatttggaaAACTCCAACAAA
CGAACTCTAAGTGGACAAGAGATATTGAATTTTTGCGTGTACCAAATAGT
ATTCATTTGAATTTAGCAGTAGCTTCAACTCGAGAGATTGTGATATATAA
AGGAAACACTACTTAAAGAGATTTCTCTGGTTGAGAACATGATTTAGAGG
TGCGAAAAATCATTCGTTGGAGGTGCAAAGAACCAATCATCCAAGATTCT
GAAAGGGAAATACATGATCGAGCAGAATGCTGTGTCTTAACCCTGTACTA
AATTACACAAGCTTGATATCTTTGTTTCGAGATGGAAACAGTTATTATCG
AATAACTGAAAAGCGAAAATGAGCTGTCATACATTATCAGAGTTTTAAAG
GATGTACAATAAATAAATGAATGGATAGAGGGAATGAATGAATGTATAAA
AGTACAATAGCCAAAGAATAGTTTCTATGAGGCTTTAAAATTGCATCATT
GATGTTGTTGAGAGCGAACATttaataaaaatggaaaaagctggaaaaaa
tcattccaaacaaacaaagaaatgaAGTGTTGTTATCCTGCGACCGACTT
TTTATCTTAATTAAAAGTAGAATCTTCTTTTTACGTATCCATTAAAActt
caaaaggaaaaaaattgcaaagaatAAGACTTAAGAGATTCTTAATttat
atattattatgataattATTTGGCATAATTATTTCATGCTCAAAATATTA
TGtacatattattttcttttatatttttaaattccaTCAATGTCACAGTA
TTCATCACTATTGTTTTCTCCATTGAATCTAATACCTTCACAGTTTCCAT
CCACAAAAGTTAAGTCCCAATAGACATTTGACCATCCCCATAAAATGTAA
ACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045472XLOC_045472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073299-exon-scaffold_9-1491911889:103031..103263TCONS_00073299-exon-scaffold_9-1491911889:103031..103263Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:103031..103263TCONS_00073299-exon-scaffold_9-1510915933:103031..103263Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:103031..103263TCONS_00073299-exon-scaffold_9-1575043694:103031..103263Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1491911889:103578..103658TCONS_00073299-exon-scaffold_9-1491911889:103578..103658Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:103578..103658TCONS_00073299-exon-scaffold_9-1510915933:103578..103658Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:103578..103658TCONS_00073299-exon-scaffold_9-1575043694:103578..103658Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1491911889:104188..104214TCONS_00073299-exon-scaffold_9-1491911889:104188..104214Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:104188..104214TCONS_00073299-exon-scaffold_9-1510915933:104188..104214Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:104188..104214TCONS_00073299-exon-scaffold_9-1575043694:104188..104214Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1491911889:105106..105250TCONS_00073299-exon-scaffold_9-1491911889:105106..105250Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:105106..105250TCONS_00073299-exon-scaffold_9-1510915933:105106..105250Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:105106..105250TCONS_00073299-exon-scaffold_9-1575043694:105106..105250Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1491911889:105657..105794TCONS_00073299-exon-scaffold_9-1491911889:105657..105794Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:105657..105794TCONS_00073299-exon-scaffold_9-1510915933:105657..105794Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:105657..105794TCONS_00073299-exon-scaffold_9-1575043694:105657..105794Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1491911889:106061..106693TCONS_00073299-exon-scaffold_9-1491911889:106061..106693Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:106061..106693TCONS_00073299-exon-scaffold_9-1510915933:106061..106693Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:106061..106693TCONS_00073299-exon-scaffold_9-1575043694:106061..106693Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1491911889:106887..107281TCONS_00073299-exon-scaffold_9-1491911889:106887..107281Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:106887..107281TCONS_00073299-exon-scaffold_9-1510915933:106887..107281Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:106887..107281TCONS_00073299-exon-scaffold_9-1575043694:106887..107281Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1491911889:107495..108485TCONS_00073299-exon-scaffold_9-1491911889:107495..108485Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1510915933:107495..108485TCONS_00073299-exon-scaffold_9-1510915933:107495..108485Clytia hemisphaericaexon
TCONS_00073299-exon-scaffold_9-1575043694:107495..108485TCONS_00073299-exon-scaffold_9-1575043694:107495..108485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:103031..108485 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.049607	0	0.164951	0	0	0	0	0	0	0	0	0	0.0699207	0.0843421	0	0	0	0	0	0	0	0	0	0	0	0	2.21436e-08	0.912177	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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