Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073282
Unique NameTCONS_00073282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073282 ID=TCONS_00073282|Name=TCONS_00073282|organism=Clytia hemisphaerica|type=transcript|length=750bp
ATAAGAGAGTGCAGTTCCTAAATACCCAATTTTTTATAGAATCAATTTGC
GGGTCAGCCCTGGGGTTGCTTTGACCATCCCTGATATCATACAATAGTTA
TGCTTATTGGGCCAAGAGCTGTCGCTTGCGGGATCGCTTGCCATGGTTAG
attatacaaaatatttttactataCCAGATagggaaaaaaaaattgccta
aTTTGAGCCCTCAAGCCTATAAATAAATGTGTAATACCTTTTAGAGAGAC
GTTTCAAAAATGATTACTAAGAGGTAAAGAAAATCCGATAGTTATGGTCT
GTATAACCCATTGTTAACCTCGGTCAGCGCAACTACCTCACAAGCTCGAT
CGtcacttgacctcgggcaatatttctcagtacaggaCCGGCGAATCGGT
TTGAAAAGTGAGGGGGCTAAATGattatagtgactaaggaggccccacca
tggttggggcggacgggctggaaaatttttgaaattatggtaCTCTACAT
TGGCTTAGAAGTgatctaaatttaatttttatgaagttattggaatgaaa
aaatcaaagaaattgaaaaagtaaCTAAAACGACGCTCTCGAGTCGACAC
AAACTCTCTACCAAATTCATCTAAATAAAGTTTATCCGTTAGATTTTTAT
GGATATGGAGCAAAGAAAGATTGTTAAACCGTTTTGGCTTCATTTTTGAA
CGTAGCCAAGTCTTTTTCTCTCAccctctctttctctctctcactttttt
Run BLAST on NCBI

transcript from alignment at scaffold_89:157077..157826

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073282 ID=TCONS_00073282|Name=TCONS_00073282|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at scaffold_89:157077..157826 (Clytia hemisphaerica)
aaaaaagtgagagagagaaagagagggTGAGAGAAAAAGACTTGGCTACG TTCAAAAATGAAGCCAAAACGGTTTAACAATCTTTCTTTGCTCCATATCC ATAAAAATCTAACGGATAAACTTTATTTAGATGAATTTGGTAGAGAGTTT GTGTCGACTCGAGAGCGTCGTTTTAGttactttttcaatttctttgattt tttcattccaataacttcataaaaattaaatttagatcACTTCTAAGCCA ATGTAGAGtaccataatttcaaaaattttccagcccgtccgccccaacca tggtggggcctccttagtcactataatCATTTAGCCCCCTCACTTTTCAA ACCGATTCGCCGGtcctgtactgagaaatattgcccgaggtcaagtgaCG ATCGAGCTTGTGAGGTAGTTGCGCTGACCGAGGTTAACAATGGGTTATAC AGACCATAACTATCGGATTTTCTTTACCTCTTAGTAATCATTTTTGAAAC GTCTCTCTAAAAGGTATTACACATTTATTTATAGGCTTGAGGGCTCAAAt taggcaatttttttttccctATCTGGtatagtaaaaatattttgtataat CTAACCATGGCAAGCGATCCCGCAAGCGACAGCTCTTGGCCCAATAAGCA TAACTATTGTATGATATCAGGGATGGTCAAAGCAACCCCAGGGCTGACCC GCAAATTGATTCTATAAAAAATTGGGTATTTAGGAACTGCACTCTCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045465XLOC_045465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073282-exon-scaffold_89-1491911889:157077..157826TCONS_00073282-exon-scaffold_89-1491911889:157077..157826Clytia hemisphaericaexon
TCONS_00073282-exon-scaffold_89-1510915933:157077..157826TCONS_00073282-exon-scaffold_89-1510915933:157077..157826Clytia hemisphaericaexon
TCONS_00073282-exon-scaffold_89-1575043694:157077..157826TCONS_00073282-exon-scaffold_89-1575043694:157077..157826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:157077..157826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167748 0 0.211179 0 0.684259 0.209649 2.78226 2.97915 1.74711 2.12195 0.841896 1.86443 0.912929 0.719991 2.26037 1.09343 0.246146 0.201833 0.152378 0.360358 0.0688398 0 0.0751905 0.136718 0.42245 0.329319 0.650397 0.287897 0.516246 0.387958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top