TCONS_00073282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073282
Unique NameTCONS_00073282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073282 ID=TCONS_00073282|Name=TCONS_00073282|organism=Clytia hemisphaerica|type=transcript|length=750bp
ATAAGAGAGTGCAGTTCCTAAATACCCAATTTTTTATAGAATCAATTTGC
GGGTCAGCCCTGGGGTTGCTTTGACCATCCCTGATATCATACAATAGTTA
TGCTTATTGGGCCAAGAGCTGTCGCTTGCGGGATCGCTTGCCATGGTTAG
attatacaaaatatttttactataCCAGATagggaaaaaaaaattgccta
aTTTGAGCCCTCAAGCCTATAAATAAATGTGTAATACCTTTTAGAGAGAC
GTTTCAAAAATGATTACTAAGAGGTAAAGAAAATCCGATAGTTATGGTCT
GTATAACCCATTGTTAACCTCGGTCAGCGCAACTACCTCACAAGCTCGAT
CGtcacttgacctcgggcaatatttctcagtacaggaCCGGCGAATCGGT
TTGAAAAGTGAGGGGGCTAAATGattatagtgactaaggaggccccacca
tggttggggcggacgggctggaaaatttttgaaattatggtaCTCTACAT
TGGCTTAGAAGTgatctaaatttaatttttatgaagttattggaatgaaa
aaatcaaagaaattgaaaaagtaaCTAAAACGACGCTCTCGAGTCGACAC
AAACTCTCTACCAAATTCATCTAAATAAAGTTTATCCGTTAGATTTTTAT
GGATATGGAGCAAAGAAAGATTGTTAAACCGTTTTGGCTTCATTTTTGAA
CGTAGCCAAGTCTTTTTCTCTCAccctctctttctctctctcactttttt
Run BLAST on NCBI

transcript from alignment at scaffold_89:157077..157826

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073282 ID=TCONS_00073282|Name=TCONS_00073282|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at scaffold_89:157077..157826 (Clytia hemisphaerica)
aaaaaagtgagagagagaaagagagggTGAGAGAAAAAGACTTGGCTACG
TTCAAAAATGAAGCCAAAACGGTTTAACAATCTTTCTTTGCTCCATATCC
ATAAAAATCTAACGGATAAACTTTATTTAGATGAATTTGGTAGAGAGTTT
GTGTCGACTCGAGAGCGTCGTTTTAGttactttttcaatttctttgattt
tttcattccaataacttcataaaaattaaatttagatcACTTCTAAGCCA
ATGTAGAGtaccataatttcaaaaattttccagcccgtccgccccaacca
tggtggggcctccttagtcactataatCATTTAGCCCCCTCACTTTTCAA
ACCGATTCGCCGGtcctgtactgagaaatattgcccgaggtcaagtgaCG
ATCGAGCTTGTGAGGTAGTTGCGCTGACCGAGGTTAACAATGGGTTATAC
AGACCATAACTATCGGATTTTCTTTACCTCTTAGTAATCATTTTTGAAAC
GTCTCTCTAAAAGGTATTACACATTTATTTATAGGCTTGAGGGCTCAAAt
taggcaatttttttttccctATCTGGtatagtaaaaatattttgtataat
CTAACCATGGCAAGCGATCCCGCAAGCGACAGCTCTTGGCCCAATAAGCA
TAACTATTGTATGATATCAGGGATGGTCAAAGCAACCCCAGGGCTGACCC
GCAAATTGATTCTATAAAAAATTGGGTATTTAGGAACTGCACTCTCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045465XLOC_045465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073282-exon-scaffold_89-1491911889:157077..157826TCONS_00073282-exon-scaffold_89-1491911889:157077..157826Clytia hemisphaericaexon
TCONS_00073282-exon-scaffold_89-1510915933:157077..157826TCONS_00073282-exon-scaffold_89-1510915933:157077..157826Clytia hemisphaericaexon
TCONS_00073282-exon-scaffold_89-1575043694:157077..157826TCONS_00073282-exon-scaffold_89-1575043694:157077..157826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:157077..157826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167748	0	0.211179	0	0.684259	0.209649	2.78226	2.97915	1.74711	2.12195	0.841896	1.86443	0.912929	0.719991	2.26037	1.09343	0.246146	0.201833	0.152378	0.360358	0.0688398	0	0.0751905	0.136718	0.42245	0.329319	0.650397	0.287897	0.516246	0.387958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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