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TCONS_00073279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073279
Unique NameTCONS_00073279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073279 ID=TCONS_00073279|Name=TCONS_00073279|organism=Clytia hemisphaerica|type=transcript|length=1255bp
AAAAGCTTGAAGTTAGTACATAGCTTGTGGGTGTAACAAAAACTTGCTCA
GtagtgaaaaacaaaaattattataaagaaGAGCAACTATAAATCACTAT
CAAGAAACATGGCGAAAACAATTGTTCTTTTTACAATTGTTTTGATAATG
GTAGAATTAACTAATGCGCGACCAGCGAGTGAGTCTGCAAATTGTTATCA
TATATGCACCGGTGATGGAGATTGCACGAATCCAGATTGTCCTACATGCC
AGAATTTTCCTTACTTCGGCAAACGTTGTGCCATAGACTTTGGTGGTGAT
TTTGATAAACTTAAAGCTCTTGATAAACACAATGATGCCTTGAAGCTGTA
AAAAGGGCCGACAAGAACAGATGTAAATGGTACCTTTGGAATATTTCATA
ATTGGATGATATTATCGAAAATATATGATCAATTATTGGATGAATTGTGT
ATGAGATTCAACCCAGACTCGACTATTCTTCAGATTGAAATAGTATTTTA
ACAAATTCGCTGCCAACCACGAGTTTCTCGTAGGTAGAGGGGTCAAAGCA
ATACTTCAAAGAGCCATtactttcccagctggcacacaacgttgtttcaa
cgtttttttaacgttatatggacgttgtgaacgttagaaaaacgtcgaaa
caacgttgtgtgccagctggtttttttcacgacatttactttcgcaaatt
taaaggaaaaatatttttttgccagcataaactttcgcgaatcaagacgt
aaaattgcgaattttcacatgaaaaaatggcttagagagaCAAATAATTt
atggattggcttgaaacatttttcctttGACTTATTACATAGTCTTTTAA
CGGGCTAATAAGTGCCATATAAGCTACATTtgattcaaagtttgaagttt
tacagattttctattttgtcacgAAATTTTCGCGaccataaactttcgcg
aatggcccttcctagaatttttaaagacatttacttttgcgGAAAGGGCC
TAAATTCGTgaaaatcaaaagtttctacTCGTGGAAGTTTGTACGCCTGA
TGTTCTTTTAATAGAGAAACGTTTGCTTGCTTCTTTAATACATTTTTGCA
ATCTACATGAAATTCTGCTTCGATTGGTATACAATGTGAAGGAATTCGAA
ACAGAACTCAGGCAAAAGGAGCCTctgaaaataaaacttttgataaaatt
tcaagaggacaaaatttctgaaaaaggcTCGGAAGCGAGTGTGTATAAAG
ACGCA
Run BLAST on NCBI

transcript from alignment at scaffold_89:139470..140724

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073279 ID=TCONS_00073279|Name=TCONS_00073279|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_89:139470..140724 (Clytia hemisphaerica)
TGCGTCTTTATACACACTCGCTTCCGAgcctttttcagaaattttgtcct cttgaaattttatcaaaagttttattttcagAGGCTCCTTTTGCCTGAGT TCTGTTTCGAATTCCTTCACATTGTATACCAATCGAAGCAGAATTTCATG TAGATTGCAAAAATGTATTAAAGAAGCAAGCAAACGTTTCTCTATTAAAA GAACATCAGGCGTACAAACTTCCACGAgtagaaacttttgattttcACGA ATTTAGGCCCTTTCcgcaaaagtaaatgtctttaaaaattctaggaaggg ccattcgcgaaagtttatggtCGCGAAAATTTcgtgacaaaatagaaaat ctgtaaaacttcaaactttgaatcaAATGTAGCTTATATGGCACTTATTA GCCCGTTAAAAGACTATGTAATAAGTCaaaggaaaaatgtttcaagccaa tccataAATTATTTGtctctctaagccattttttcatgtgaaaattcgca attttacgtcttgattcgcgaaagtttatgctggcaaaaaaatatttttc ctttaaatttgcgaaagtaaatgtcgtgaaaaaaaccagctggcacacaa cgttgtttcgacgtttttctaacgttcacaacgtccatataacgttaaaa aaacgttgaaacaacgttgtgtgccagctgggaaagtaATGGCTCTTTGA AGTATTGCTTTGACCCCTCTACCTACGAGAAACTCGTGGTTGGCAGCGAA TTTGTTAAAATACTATTTCAATCTGAAGAATAGTCGAGTCTGGGTTGAAT CTCATACACAATTCATCCAATAATTGATCATATATTTTCGATAATATCAT CCAATTATGAAATATTCCAAAGGTACCATTTACATCTGTTCTTGTCGGCC CTTTTTACAGCTTCAAGGCATCATTGTGTTTATCAAGAGCTTTAAGTTTA TCAAAATCACCACCAAAGTCTATGGCACAACGTTTGCCGAAGTAAGGAAA ATTCTGGCATGTAGGACAATCTGGATTCGTGCAATCTCCATCACCGGTGC ATATATGATAACAATTTGCAGACTCACTCGCTGGTCGCGCATTAGTTAAT TCTACCATTATCAAAACAATTGTAAAAAGAACAATTGTTTTCGCCATGTT TCTTGATAGTGATTTATAGTTGCTCttctttataataatttttgtttttc actaCTGAGCAAGTTTTTGTTACACCCACAAGCTATGTACTAACTTCAAG CTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045462XLOC_045462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073279-exon-scaffold_89-1491911889:139470..140724TCONS_00073279-exon-scaffold_89-1491911889:139470..140724Clytia hemisphaericaexon
TCONS_00073279-exon-scaffold_89-1510915933:139470..140724TCONS_00073279-exon-scaffold_89-1510915933:139470..140724Clytia hemisphaericaexon
TCONS_00073279-exon-scaffold_89-1575043694:139470..140724TCONS_00073279-exon-scaffold_89-1575043694:139470..140724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:139470..140724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.132591 0.0461174 0.14402 0.0936973 0.0723971 0 0.0818631 0.0866192 0.11651 0 0.0457291 0.71121 0.224897 2.49453 0.549744 0.054734 0.053008 0.336414 0.0763026 0.204588 0.10287 0.078135 0.0363173 0.0746063 0.0659079 0.285039 0.19155 0.0384546 0.116611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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