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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073268 ID=TCONS_00073268|Name=TCONS_00073268|organism=Clytia hemisphaerica|type=transcript|length=1734bp CAAGCTTCTGTCTCTTGCAGTTAAAGGAAATAAAACTCTGCTCTAAAGTC AAAATTATAATCAAAAcatgagaattaaaaaaaaaaaggttcagTTGAAG GGTGCAAAGGTTTGGTTGCTGACCATCcatttaaaaacatgaaatatttt tatagaaaagggTAAAAGTAAAGTTTTGTCACACTCATAGAGAAGTCATC TCGTCAACACAAATCGCGTTATTTTAACAAactaatgttaatttttcttt ctccatTAACAtccagtattttttgaaaaacatttacGTTTTGTGTGTTT TTGAACTATCGGTGTGGTacgatttttattttcattcataaaaagatttt ttctttcgttACTACGACACATCACCTTGAAAATAAACACAGGACATCTT TAGCGATTAGtcaaatttattcatttatGCTGTATATCAACATTGTAAGA AGTAACAAGATGGTTGTTCGAAGACAAGGATACCTTCTtctctttgttgt tgttgtcaaATTATGTCAAAGCGTTCCCATAGCAACCACAACCCAACAAC CAATCACAAGTCGTCCTCACAAAGATTGTTTTCCTTCGGGATTTGAATTT GCttataatgacgtcatcgatcgtgggaatttccctaatgGTGAAACATG TTGGCAAATTACTTGTGGTCCGTCGGGTAGATTGATCAAGTCTTTAACAC CTTGTGAAAAAGTGATGACTCAGCGAAAACCTACAGCAAAACCTTCAGAA GAAAAACAAGTAGAAAACCAATGCATTTTCAATGCAAGAAAATTCAACCC AGGGGAAGACATTCAGACGCTCTCTGATTGGCAATCTGACCGTTGCTATG GTACCCGATGCAGTAAAGATGGTACCATAGTTGCATGGGAAAACATCAAT TGTTATTCCACACCTTACTACAGCACTACGGAGAAGGGTGGTAGTGTCCA AACTCCCGAGTTTATTACCACTCCATCGCAGGTAGAATTTTCAACAACTG AAGCTTCTGGATGTTATGAAAATAGTGTGATTTACCAACCCGGTGAAGAG ATTAGTTTCCAGTACTTTACGGAGAACTCAACATGTTGTGGACGCTATTG TAATTATAGCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTGAACAAG GAAAATCGACTGTCGAGCCTACTTCAACGCAAATTACTACATTTGGTTCA ACCACAGATACAGATCAAGGATGTTATACAAATGGCAGAGCGTACAAGCC AGGAGCACACATCGATTCAGGTAATGATGGTTCAAGTTGGTGTTTCGGTC GATATTGTAATGAAAACTCTGTCATTGTCTATTGGGATGATTTCAATTGT GACGTTAAATCTTCTAAAAAACCGTCACTGATTACATCAAAATATGACTT CACAAAAACACCGTGGACATCAGAATATGACGTCACAAAGCAACCAGTAA CGTCAACTAGTGACTTAACAACGACTTTGATCACATCgacaaattttgat gaaatttcaacattaGATCCTAACCATTTGAGTACATCAAGTGGAGGCCT TTCTACTACTACAGAGGAGGAGGTTACGACTGAACAGCCACCAGTGGAAG GTTCTCTATGGGAGCAACTTCagtttttagtgaaaaacaAACTATACTCA ACTGTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGATGGGAAATATCA AGTGAAACtgtctattttcaaaaaaaaatcatag Run BLAST on NCBI protein sequence of TCONS_00073268-protein >TCONS_00073268-protein ID=TCONS_00073268-protein|Name=TCONS_00073268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MLYINIVRSNKMVVRRQGYLLLFVVVVKLCQSVPIATTTQQPITSRPHKD CFPSGFEFAYNDVIDRGNFPNGETCWQITCGPSGRLIKSLTPCEKVMTQR KPTAKPSEEKQVENQCIFNARKFNPGEDIQTLSDWQSDRCYGTRCSKDGT IVAWENINCYSTPYYSTTEKGGSVQTPEFITTPSQVEFSTTEASGCYENS VIYQPGEEISFQYFTENSTCCGRYCNYSNKIVSWEKSECEQGKSTVEPTS TQITTFGSTTDTDQGCYTNGRAYKPGAHIDSGNDGSSWCFGRYCNENSVI VYWDDFNCDVKSSKKPSLITSKYDFTKTPWTSEYDVTKQPVTSTSDLTTT LITSTNFDEISTLDPNHLSTSSGGLSTTTEEEVTTEQPPVEGSLWEQLQF LVKNKLYSTVVEDSGLTKSKDGKYQVKLSIFKKKS Run BLAST on NCBI transcript from alignment at scaffold_89:193169..197099- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073268 ID=TCONS_00073268|Name=TCONS_00073268|organism=Clytia hemisphaerica|type=transcript|length=3931bp|location=Sequence derived from alignment at scaffold_89:193169..197099- (Clytia hemisphaerica) CAAGCTTCTGTCTCTTGCAGTTAAAGGAAATAAAACTCTGCTCTAAAGTC
AAAATTATAATCAAAACATGAGAATTAAAAAAAAAAAGGTTCAGTTGAAG
GGTGCAAAGGTTTGGTTGCTGACCATCCATTTAAAAACATGAAATATTTT
TATAGAAAAGGGTAAAAGTAAAGTTTTGTCACACTCATAGAGAAGTCATC
TCGTCAACACAAATCGCGTTATTTTAACAAACTAATGTTAATTTTTCTTT
CTCCATTAACATCCAGTATTTTTTGAAAAACATTTACGTTTTGTGTGTTT
TTGAACTATCGGTGTGGTACGATTTTTATTTTCATTCATAAAAAGATTTT
TTCTTTCGTTACTACGACACATCACCTTGAAAATAAACACAGGACATCTT
TAGCGATTAGTCAAATTTATTCATTTATGCTGTATATCAACATTGTAAGA
AGTAACAAGATGGTTGTTCGAAGACAAGGTAAGATTTTGTCTAAACACCC
CTGTCTCACAGTCACGGTAAGAATTTTTCCAAGAGAGGGGGTTAAAATTT
CTATATGGAAGTCCCAATGGGAATAGAAATCCTATTGTTCGAAAGATCTA
GTGGGGTGGGTTTGGAGGCCGATTTTCTCCTTGAATTTCAATAAGGATGG
AAGGAAATTCAATGTCCCAGTGGGTCTATGACACAGGGGTGTGTCAAAGA
TTGTCAATAAATTCCAAATATGGCGTTTGCCTTTATATATAGCTCTGTAT
CGTATTAACTTTACCTCGCTGATTCACTGAGACAGGGGTGTCAAAGATCC
TTTGCACAATAAATTCCAGGGCGAAAGGTAAAATCAACGGCGAAAGAATA
CCTATCTGACACTCATCGTAGTCCGATAATGTGGTTTGGTTTTTCTAATC
ACACCTAGCAGTTTGTCTTTCGTAAACTATGCTATGAAAACACCATAGGG
CATTGTCGTAGAAAGCTGTTTAAAATTTGAAGTCAAATATCTTTTTCCAG
GATACCTTCTTCTCTTTGTTGTTGTTGTCAAATTATGTCAAAGCGTTCCC
ATAGCAACCACAACCCAACAACCAATCACAAGTCGTCCTCACAAAGATTG
TTTTCCTTCGGGATTTGAATTTGCTTATAATGACGTCATCGATCGTGGGA
ATTTCCCTAATGGTGAAACATGTTGGCAAATTACTTGTGGTCCGTCGGGT
AGATTGATCAAGTCTTTAACACCTTGTGAAAAAGTGATGACTCAGCGAAA
ACCTACAGCAAAACCTTCAGAAGAAAAACAAGTAGAAAACCAATGCATTT
TCAATGCAAGAAAATTCAACCCAGGTACATACATAATGTTTAATTACATG
CTTTTCATATAAGGAAGATTTGAGCTGTTTTAGGTTAAAAATGTTCGTAG
TATTACTTTATTTATTTAGCGACTTAAAATCAGTATTTTCTTGATAATTT
CTGAAATCTTTAGGCTGAAATTGTTTTTAACACACACAACGAGTATATTC
GTACTAGAGAAATCAATGAATATATATTTTGGAGCCTACGTAAAATTTGT
GAAAACTTGTAGTCAGAAAGTCTCCCACCTGGCTGTCCGCAAGAAAAGGA
GACGTATTAGAATAATGAGGCAGGGACTTTTGGACACACCAGGGTTGTTC
AGACATGTATTTAAATTCAACTTAGCAGCTGACTTCAATGCAAACATAAC
TGTTACACGTTTTTTTATAAGAACATCCAAAACTTTTGAACCCTTTGAAT
GTTCATAACTTTTTGAATTTCAAGCCTAAAATTATTCTTAAATTCTTAAC
ATGCTCTAATTTTTGCCATTTTTTAAATACTTTTGACCATTTTCCAAAGA
AATTGGGTTTGGGTGTTTTTAGAGCCCGCGAAGCCTTAAAATGTTCTTAA
CTTATTCTTAAGATTTTGGCCATCGAAGCCTTATGTTCTTATAAAAAAAC
GTGTATGCCATATGAAGGGGGTATTTGACCTTGTAAAAATATTTAAGATT
ATCAATCTAATGGTTTCAAGTTACATCTGAATAAAGGTCCCAGTATTGTG
CTAAAAAGACCTTTTGTCGTCATCAGATAGAAACTGAAAATAATTTTGAT
ACCTATTGTAGTTCAATTTACAAACATTTTATACAACTTTTTGAATGTAG
CTGCCAATTGCCGCGCGGGCATTTTTTTGTCCGTTTTACCACCCTAAACA
GGGCCCCGGTTTGAGGGCTGCAGTGAGGGGGCCAAATATTGGGGCAAATT
GGCGTTACCCAATTTTGAGTTTTGAGTTTTGAGGGGTTAAACTCTTTCAG
GACGGCCTCAGCTAATTTCGTTCCATTTGGAACGATACTTTTCGGCTGCC
GTAATATTTTGTAAGGACCTACATTTAGTACGCTGAATAAATAGAGCATA
AAAAGAGCTTTCCAACGAACTCAAACATGACCTATTTAGATTGTTTTAAA
GCTGAGATAATTGCATCTGAAGTTGGAACTTCTAATGAAAAGTAACTGAA
AGTTTTCAAAATAGATTTTCTCGGAAAAAAAGTGAGGAGCCATGCCCCTG
CCCCCCCCCCCTATTCTAAAACCGATCCCAGTCTTTTTTCGCACCTAAAG
ACAATAGAAAATAGAAAAAAGTGTAAAAAAAGGATTGGATCACCTGACCA
CGCGACTATGGTCGAAAAGGTGTATTACATAACATTAGAAAGATAAGCTA
TTTTCCTTAAGAAATACCCGCCAAGTTACCGAGATCCTAAACTAGTAGTT
TAAATCATAAGGGTTGAAAACGTTACTTAAATTTACATTCTAAATCTTAA
TCATCGGGTGTGTGATCATTAAAAAACTAGTTTGCTACTTTGAGGAACTT
AGAAAAAGCCTTCCAAAATCTGGCTGTGACACTCACTTTGCACCAATCCA
ATAATGTTGGGGTCGTACCTACATGCCATTTTTGTATCGATTAGAAATGT
TGAAAAATCGTCCGATTGAGCTCTTAAAAGTCGTTTGTTTGTTTTCTAGG
GGAAGACATTCAGACGCTCTCTGATTGGCAATCTGACCGTTGCTATGGTA
CCCGATGCAGTAAAGATGGTACCATAGTTGCATGGGAAAACATCAATTGT
TATTCCACACCTTACTACAGCACTACGGAGAAGGGTGGTAGTGTCCAAAC
TCCCGAGTTTATTACCACTCCATCGCAGGTAGAATTTTCAACAACTGAAG
CTTCTGGATGTTATGAAAATAGTGTGATTTACCAACCCGGTGAAGAGATT
AGTTTCCAGTACTTTACGGAGAACTCAACATGTTGTGGACGCTATTGTAA
TTATAGCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTGAACAAGGAA
AATCGACTGTCGAGCCTACTTCAACGCAAATTACTACATTTGGTTCAACC
ACAGATACAGATCAAGGATGTTATACAAATGGCAGAGCGTACAAGCCAGG
AGCACACATCGATTCAGGTAATGATGGTTCAAGTTGGTGTTTCGGTCGAT
ATTGTAATGAAAACTCTGTCATTGTCTATTGGGATGATTTCAATTGTGAC
GTTAAATCTTCTAAAAAACCGTCACTGATTACATCAAAATATGACTTCAC
AAAAACACCGTGGACATCAGAATATGACGTCACAAAGCAACCAGTAACGT
CAACTAGTGACTTAACAACGACTTTGATCACATCGACAAATTTTGATGAA
ATTTCAACATTAGATCCTAACCATTTGAGTACATCAAGTGGAGGCCTTTC
TACTACTACAGAGGAGGAGGTTACGACTGAACAGCCACCAGTGGAAGGTT
CTCTATGGGAGCAACTTCAGTTTTTAGTGAAAAACAAACTATACTCAACT
GTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGATGGGAAATATCAAGT
GAAACTGTCTATTTTCAAAAAAAAATCATAG Coding sequence (CDS) from alignment at scaffold_89:193169..197099- >TCONS_00073268 ID=TCONS_00073268|Name=TCONS_00073268|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at scaffold_89:193169..197099- (Clytia hemisphaerica) GGGAAGACATTCAGACGCTCTCTGATTGGCAATCTGACCGTTGCTATGGT ACCCGATGCAGTAAAGATGGTACCATAGTTGCATGGGAAAACATCAATTG TTATTCCACACCTTACTACAGCACTACGGAGAAGGGTGGTAGTGTCCAAA CTCCCGAGTTTATTACCACTCCATCGCAGGTAGAATTTTCAACAACTGAA GCTTCTGGATGTTATGAAAATAGTGTGATTTACCAACCCGGTGAAGAGAT TAGTTTCCAGTACTTTACGGAGAACTCAACATGTTGTGGACGCTATTGTA ATTATAGCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTGAACAAGGA AAATCGACTGTCGAGCCTACTTCAACGCAAATTACTACATTTGGTTCAAC CACAGATACAGATCAAGGATGTTATACAAATGGCAGAGCGTACAAGCCAG GAGCACACATCGATTCAGGTAATGATGGTTCAAGTTGGTGTTTCGGTCGA TATTGTAATGAAAACTCTGTCATTGTCTATTGGGATGATTTCAATTGTGA CGTTAAATCTTCTAAAAAACCGTCACTGATTACATCAAAATATGACTTCA CAAAAACACCGTGGACATCAGAATATGACGTCACAAAGCAACCAGTAACG TCAACTAGTGACTTAACAACGACTTTGATCACATCGACAAATTTTGATGA AATTTCAACATTAGATCCTAACCATTTGAGTACATCAAGTGGAGGCCTTT CTACTACTACAGAGGAGGAGGTTACGACTGAACAGCCACCAGTGGAAGGT TCTCTATGGGAGCAACTTCAGTTTTTAGTGAAAAACAAACTATACTCAAC TGTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGATGGGAAATATCAAG TGAAACTGTCTATTTTCAAAAAAAAATCATAGGATACCTTCTTCTCTTTG TTGTTGTTGTCAAATTATGTCAAAGCGTTCCCATAGCAACCACAACCCAA CAACCAATCACAAGTCGTCCTCACAAAGATTGTTTTCCTTCGGGATTTGA ATTTGCTTATAATGACGTCATCGATCGTGGGAATTTCCCTAATGGTGAAA CATGTTGGCAAATTACTTGTGGTCCGTCGGGTAGATTGATCAAGTCTTTA ACACCTTGTGAAAAAGTGATGACTCAGCGAAAACCTACAGCAAAACCTTC AGAAGAAAAACAAGTAGAAAACCAATGCATTTTCAATGCAAGAAAATTCA ACCCAGATGCTGTATATCAACATTGTAAGAAGTAACAAGATGGTTGTTCG AAGACAAGGGGAAGACATTCAGACGCTCTCTGATTGGCAATCTGACCGTT GCTATGGTACCCGATGCAGTAAAGATGGTACCATAGTTGCATGGGAAAAC ATCAATTGTTATTCCACACCTTACTACAGCACTACGGAGAAGGGTGGTAG TGTCCAAACTCCCGAGTTTATTACCACTCCATCGCAGGTAGAATTTTCAA CAACTGAAGCTTCTGGATGTTATGAAAATAGTGTGATTTACCAACCCGGT GAAGAGATTAGTTTCCAGTACTTTACGGAGAACTCAACATGTTGTGGACG CTATTGTAATTATAGCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTG AACAAGGAAAATCGACTGTCGAGCCTACTTCAACGCAAATTACTACATTT GGTTCAACCACAGATACAGATCAAGGATGTTATACAAATGGCAGAGCGTA CAAGCCAGGAGCACACATCGATTCAGGTAATGATGGTTCAAGTTGGTGTT TCGGTCGATATTGTAATGAAAACTCTGTCATTGTCTATTGGGATGATTTC AATTGTGACGTTAAATCTTCTAAAAAACCGTCACTGATTACATCAAAATA TGACTTCACAAAAACACCGTGGACATCAGAATATGACGTCACAAAGCAAC CAGTAACGTCAACTAGTGACTTAACAACGACTTTGATCACATCGACAAAT TTTGATGAAATTTCAACATTAGATCCTAACCATTTGAGTACATCAAGTGG AGGCCTTTCTACTACTACAGAGGAGGAGGTTACGACTGAACAGCCACCAG TGGAAGGTTCTCTATGGGAGCAACTTCAGTTTTTAGTGAAAAACAAACTA TACTCAACTGTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGATGGGAA ATATCAAGTGAAACTGTCTATTTTCAAAAAAAAATCATAGGATACCTTCT TCTCTTTGTTGTTGTTGTCAAATTATGTCAAAGCGTTCCCATAGCAACCA CAACCCAACAACCAATCACAAGTCGTCCTCACAAAGATTGTTTTCCTTCG GGATTTGAATTTGCTTATAATGACGTCATCGATCGTGGGAATTTCCCTAA TGGTGAAACATGTTGGCAAATTACTTGTGGTCCGTCGGGTAGATTGATCA AGTCTTTAACACCTTGTGAAAAAGTGATGACTCAGCGAAAACCTACAGCA AAACCTTCAGAAGAAAAACAAGTAGAAAACCAATGCATTTTCAATGCAAG AAAATTCAACCCAGATGCTGTATATCAACATTGTAAGAAGTAACAAGATG GTTGTTCGAAGACAAGGGGAAGACATTCAGACGCTCTCTGATTGGCAATC TGACCGTTGCTATGGTACCCGATGCAGTAAAGATGGTACCATAGTTGCAT GGGAAAACATCAATTGTTATTCCACACCTTACTACAGCACTACGGAGAAG GGTGGTAGTGTCCAAACTCCCGAGTTTATTACCACTCCATCGCAGGTAGA ATTTTCAACAACTGAAGCTTCTGGATGTTATGAAAATAGTGTGATTTACC AACCCGGTGAAGAGATTAGTTTCCAGTACTTTACGGAGAACTCAACATGT TGTGGACGCTATTGTAATTATAGCAATAAAATTGTTTCTTGGGAAAAATC CGAGTGTGAACAAGGAAAATCGACTGTCGAGCCTACTTCAACGCAAATTA CTACATTTGGTTCAACCACAGATACAGATCAAGGATGTTATACAAATGGC AGAGCGTACAAGCCAGGAGCACACATCGATTCAGGTAATGATGGTTCAAG TTGGTGTTTCGGTCGATATTGTAATGAAAACTCTGTCATTGTCTATTGGG ATGATTTCAATTGTGACGTTAAATCTTCTAAAAAACCGTCACTGATTACA TCAAAATATGACTTCACAAAAACACCGTGGACATCAGAATATGACGTCAC AAAGCAACCAGTAACGTCAACTAGTGACTTAACAACGACTTTGATCACAT CGACAAATTTTGATGAAATTTCAACATTAGATCCTAACCATTTGAGTACA TCAAGTGGAGGCCTTTCTACTACTACAGAGGAGGAGGTTACGACTGAACA GCCACCAGTGGAAGGTTCTCTATGGGAGCAACTTCAGTTTTTAGTGAAAA ACAAACTATACTCAACTGTAGTCGAGGATTCTGGTTTAACGAAATCAAAG GATGGGAAATATCAAGTGAAACTGTCTATTTTCAAAAAAAAATCATAGGA TACCTTCTTCTCTTTGTTGTTGTTGTCAAATTATGTCAAAGCGTTCCCAT AGCAACCACAACCCAACAACCAATCACAAGTCGTCCTCACAAAGATTGTT TTCCTTCGGGATTTGAATTTGCTTATAATGACGTCATCGATCGTGGGAAT TTCCCTAATGGTGAAACATGTTGGCAAATTACTTGTGGTCCGTCGGGTAG ATTGATCAAGTCTTTAACACCTTGTGAAAAAGTGATGACTCAGCGAAAAC CTACAGCAAAACCTTCAGAAGAAAAACAAGTAGAAAACCAATGCATTTTC AATGCAAGAAAATTCAACCCAGATGCTGTATATCAACATTGTAAGAAGTA ACAAGATGGTTGTTCGAAGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073268-exon-scaffold_89-1575043694:196622..197099 | TCONS_00073268-exon-scaffold_89-1575043694:196622..197099 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1575043694:195776..196099 | TCONS_00073268-exon-scaffold_89-1575043694:195776..196099 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1575043694:193169..194100 | TCONS_00073268-exon-scaffold_89-1575043694:193169..194100 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1510915933:196622..197099 | TCONS_00073268-exon-scaffold_89-1510915933:196622..197099 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1510915933:195776..196099 | TCONS_00073268-exon-scaffold_89-1510915933:195776..196099 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1510915933:193169..194100 | TCONS_00073268-exon-scaffold_89-1510915933:193169..194100 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1491911889:196622..197099 | TCONS_00073268-exon-scaffold_89-1491911889:196622..197099 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1491911889:195776..196099 | TCONS_00073268-exon-scaffold_89-1491911889:195776..196099 | Clytia hemisphaerica | exon |
TCONS_00073268-exon-scaffold_89-1491911889:193169..194100 | TCONS_00073268-exon-scaffold_89-1491911889:193169..194100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_89 | supercontig | scaffold_89:193169..197099 - |
Blast
The following BLAST results are available for this feature:
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