|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073267 ID=TCONS_00073267|Name=TCONS_00073267|organism=Clytia hemisphaerica|type=transcript|length=1287bp
TTTGtctaaacacccctgtctcacagtcacgGATACCTTCTtctctttgt
tgttgttgtcaaATTATGTCAAAGCGTTCCCATAGCAACCACAACCCAAC
AACCAATCACAAGTCGTCCTCACAAAGATTGTTTTCCTTCGGGATTTGAA
TTTGCttataatgacgtcatcgatcgtgggaatttccctaatgGTGAAAC
ATGTTGGCAAATTACTTGTGGTCCGTCGGGTAGATTGATCAAGTCTTTAA
CACCTTGTGAAAAAGTGATGACTCAGCGAAAACCTACAGCAAAACCTTCA
GAAGAAAAACAAGTAGAAAACCAATGCATTTTCAATGCAAGAAAATTCAA
CCCAGGGGAAGACATTCAGACGCTCTCTGATTGGCAATCTGACCGTTGCT
ATGGTACCCGATGCAGTAAAGATGGTACCATAGTTGCATGGGAAAACATC
AATTGTTATTCCACACCTTACTACAGCACTACGGAGAAGGGTGGTAGTGT
CCAAACTCCCGAGTTTATTACCACTCCATCGCAGGTAGAATTTTCAACAA
CTGAAGCTTCTGGATGTTATGAAAATAGTGTGATTTACCAACCCGGTGAA
GAGATTAGTTTCCAGTACTTTACGGAGAACTCAACATGTTGTGGACGCTA
TTGTAATTATAGCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTGAAC
AAGGAAAATCGACTGTCGAGCCTACTTCAACGCAAATTACTACATTTGGT
TCAACCACAGATACAGATCAAGGATGTTATACAAATGGCAGAGCGTACAA
GCCAGGAGCACACATCGATTCAGGTAATGATGGTTCAAGTTGGTGTTTCG
GTCGATATTGTAATGAAAACTCTGTCATTGTCTATTGGGATGATTTCAAT
TGTGACGTTAAATCTTCTAAAAAACCGTCACTGATTACATCAAAATATGA
CTTCACAAAAACACCGTGGACATCAGAATATGACGTCACAAAGCAACCAG
TAACGTCAACTAGTGACTTAACAACGACTTTGATCACATCgacaaatttt
gatgaaatttcaacattaGATCCTAACCATTTGAGTACATCAAGTGGAGG
CCTTTCTACTACTACAGAGGAGGAGGTTACGACTGAACAGCCACCAGTGG
AAGGTTCTCTATGGGAGCAACTTCagtttttagtgaaaaacaAACTATAC
TCAACTGTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGATGGGAAATA
TCAAGTGAAACtgtctattttcaaaaaaaaatcatag Run BLAST on NCBI transcript from alignment at scaffold_89:193169..196614- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073267 ID=TCONS_00073267|Name=TCONS_00073267|organism=Clytia hemisphaerica|type=transcript|length=3446bp|location=Sequence derived from alignment at scaffold_89:193169..196614- (Clytia hemisphaerica)
TTTGTCTAAACACCCCTGTCTCACAGTCACGGTAAGAATTTTTCCAAGAG
AGGGGGTTAAAATTTCTATATGGAAGTCCCAATGGGAATAGAAATCCTAT
TGTTCGAAAGATCTAGTGGGGTGGGTTTGGAGGCCGATTTTCTCCTTGAA
TTTCAATAAGGATGGAAGGAAATTCAATGTCCCAGTGGGTCTATGACACA
GGGGTGTGTCAAAGATTGTCAATAAATTCCAAATATGGCGTTTGCCTTTA
TATATAGCTCTGTATCGTATTAACTTTACCTCGCTGATTCACTGAGACAG
GGGTGTCAAAGATCCTTTGCACAATAAATTCCAGGGCGAAAGGTAAAATC
AACGGCGAAAGAATACCTATCTGACACTCATCGTAGTCCGATAATGTGGT
TTGGTTTTTCTAATCACACCTAGCAGTTTGTCTTTCGTAAACTATGCTAT
GAAAACACCATAGGGCATTGTCGTAGAAAGCTGTTTAAAATTTGAAGTCA
AATATCTTTTTCCAGGATACCTTCTTCTCTTTGTTGTTGTTGTCAAATTA
TGTCAAAGCGTTCCCATAGCAACCACAACCCAACAACCAATCACAAGTCG
TCCTCACAAAGATTGTTTTCCTTCGGGATTTGAATTTGCTTATAATGACG
TCATCGATCGTGGGAATTTCCCTAATGGTGAAACATGTTGGCAAATTACT
TGTGGTCCGTCGGGTAGATTGATCAAGTCTTTAACACCTTGTGAAAAAGT
GATGACTCAGCGAAAACCTACAGCAAAACCTTCAGAAGAAAAACAAGTAG
AAAACCAATGCATTTTCAATGCAAGAAAATTCAACCCAGGTACATACATA
ATGTTTAATTACATGCTTTTCATATAAGGAAGATTTGAGCTGTTTTAGGT
TAAAAATGTTCGTAGTATTACTTTATTTATTTAGCGACTTAAAATCAGTA
TTTTCTTGATAATTTCTGAAATCTTTAGGCTGAAATTGTTTTTAACACAC
ACAACGAGTATATTCGTACTAGAGAAATCAATGAATATATATTTTGGAGC
CTACGTAAAATTTGTGAAAACTTGTAGTCAGAAAGTCTCCCACCTGGCTG
TCCGCAAGAAAAGGAGACGTATTAGAATAATGAGGCAGGGACTTTTGGAC
ACACCAGGGTTGTTCAGACATGTATTTAAATTCAACTTAGCAGCTGACTT
CAATGCAAACATAACTGTTACACGTTTTTTTATAAGAACATCCAAAACTT
TTGAACCCTTTGAATGTTCATAACTTTTTGAATTTCAAGCCTAAAATTAT
TCTTAAATTCTTAACATGCTCTAATTTTTGCCATTTTTTAAATACTTTTG
ACCATTTTCCAAAGAAATTGGGTTTGGGTGTTTTTAGAGCCCGCGAAGCC
TTAAAATGTTCTTAACTTATTCTTAAGATTTTGGCCATCGAAGCCTTATG
TTCTTATAAAAAAACGTGTATGCCATATGAAGGGGGTATTTGACCTTGTA
AAAATATTTAAGATTATCAATCTAATGGTTTCAAGTTACATCTGAATAAA
GGTCCCAGTATTGTGCTAAAAAGACCTTTTGTCGTCATCAGATAGAAACT
GAAAATAATTTTGATACCTATTGTAGTTCAATTTACAAACATTTTATACA
ACTTTTTGAATGTAGCTGCCAATTGCCGCGCGGGCATTTTTTTGTCCGTT
TTACCACCCTAAACAGGGCCCCGGTTTGAGGGCTGCAGTGAGGGGGCCAA
ATATTGGGGCAAATTGGCGTTACCCAATTTTGAGTTTTGAGTTTTGAGGG
GTTAAACTCTTTCAGGACGGCCTCAGCTAATTTCGTTCCATTTGGAACGA
TACTTTTCGGCTGCCGTAATATTTTGTAAGGACCTACATTTAGTACGCTG
AATAAATAGAGCATAAAAAGAGCTTTCCAACGAACTCAAACATGACCTAT
TTAGATTGTTTTAAAGCTGAGATAATTGCATCTGAAGTTGGAACTTCTAA
TGAAAAGTAACTGAAAGTTTTCAAAATAGATTTTCTCGGAAAAAAAGTGA
GGAGCCATGCCCCTGCCCCCCCCCCCTATTCTAAAACCGATCCCAGTCTT
TTTTCGCACCTAAAGACAATAGAAAATAGAAAAAAGTGTAAAAAAAGGAT
TGGATCACCTGACCACGCGACTATGGTCGAAAAGGTGTATTACATAACAT
TAGAAAGATAAGCTATTTTCCTTAAGAAATACCCGCCAAGTTACCGAGAT
CCTAAACTAGTAGTTTAAATCATAAGGGTTGAAAACGTTACTTAAATTTA
CATTCTAAATCTTAATCATCGGGTGTGTGATCATTAAAAAACTAGTTTGC
TACTTTGAGGAACTTAGAAAAAGCCTTCCAAAATCTGGCTGTGACACTCA
CTTTGCACCAATCCAATAATGTTGGGGTCGTACCTACATGCCATTTTTGT
ATCGATTAGAAATGTTGAAAAATCGTCCGATTGAGCTCTTAAAAGTCGTT
TGTTTGTTTTCTAGGGGAAGACATTCAGACGCTCTCTGATTGGCAATCTG
ACCGTTGCTATGGTACCCGATGCAGTAAAGATGGTACCATAGTTGCATGG
GAAAACATCAATTGTTATTCCACACCTTACTACAGCACTACGGAGAAGGG
TGGTAGTGTCCAAACTCCCGAGTTTATTACCACTCCATCGCAGGTAGAAT
TTTCAACAACTGAAGCTTCTGGATGTTATGAAAATAGTGTGATTTACCAA
CCCGGTGAAGAGATTAGTTTCCAGTACTTTACGGAGAACTCAACATGTTG
TGGACGCTATTGTAATTATAGCAATAAAATTGTTTCTTGGGAAAAATCCG
AGTGTGAACAAGGAAAATCGACTGTCGAGCCTACTTCAACGCAAATTACT
ACATTTGGTTCAACCACAGATACAGATCAAGGATGTTATACAAATGGCAG
AGCGTACAAGCCAGGAGCACACATCGATTCAGGTAATGATGGTTCAAGTT
GGTGTTTCGGTCGATATTGTAATGAAAACTCTGTCATTGTCTATTGGGAT
GATTTCAATTGTGACGTTAAATCTTCTAAAAAACCGTCACTGATTACATC
AAAATATGACTTCACAAAAACACCGTGGACATCAGAATATGACGTCACAA
AGCAACCAGTAACGTCAACTAGTGACTTAACAACGACTTTGATCACATCG
ACAAATTTTGATGAAATTTCAACATTAGATCCTAACCATTTGAGTACATC
AAGTGGAGGCCTTTCTACTACTACAGAGGAGGAGGTTACGACTGAACAGC
CACCAGTGGAAGGTTCTCTATGGGAGCAACTTCAGTTTTTAGTGAAAAAC
AAACTATACTCAACTGTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGA
TGGGAAATATCAAGTGAAACTGTCTATTTTCAAAAAAAAATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073267-exon-scaffold_89-1575043694:196584..196614 | TCONS_00073267-exon-scaffold_89-1575043694:196584..196614 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1575043694:195776..196099 | TCONS_00073267-exon-scaffold_89-1575043694:195776..196099 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1575043694:193169..194100 | TCONS_00073267-exon-scaffold_89-1575043694:193169..194100 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1510915933:196584..196614 | TCONS_00073267-exon-scaffold_89-1510915933:196584..196614 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1510915933:195776..196099 | TCONS_00073267-exon-scaffold_89-1510915933:195776..196099 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1510915933:193169..194100 | TCONS_00073267-exon-scaffold_89-1510915933:193169..194100 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1491911889:196584..196614 | TCONS_00073267-exon-scaffold_89-1491911889:196584..196614 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1491911889:195776..196099 | TCONS_00073267-exon-scaffold_89-1491911889:195776..196099 | Clytia hemisphaerica | exon |
| TCONS_00073267-exon-scaffold_89-1491911889:193169..194100 | TCONS_00073267-exon-scaffold_89-1491911889:193169..194100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:193169..196614 - |
Blast
The following BLAST results are available for this feature:
|
