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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073259 ID=TCONS_00073259|Name=TCONS_00073259|organism=Clytia hemisphaerica|type=transcript|length=1422bp
AATACTTCTCCAGAGTTTTGGATGACGGCTTTGTAAGATTACCATCGACA
CAAGATTGGATGTGAAGATGTCCTTTGGTATCACAGATTGCCACAGATGA
TAGTGGTCCACAATACACAATCTTGTGAATTCCATTGTTCTCGATGTTGG
TCAATAGCTTCTTTTCCACCAATCTCGGTACAGTCATGAAGGATAAAGAG
TTATCACTAAGCGCGATCAGGAGTAATGATTTGTCTAAGTTCGGTTCACT
CACAGCGCAATctgtattttcttcaaattgttCTAGTGCAATCAGATTCT
CCAAGATATTTGATGGAGCTGACGAGCACGGTACGTACACTGCATCTTGA
ATGGTGGTTCCGTGCAAAGTTCGACTGTTGACAAGTTTAATCTCTGTTAC
TTGTTTATCGTTAGATATGATCGAGAAAACTAACAACACATTCTTAACAG
AATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCACAAGGTAA
TTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCATAATAAGA
CCTATCAATATCGAACTTGNGGATATTATGGAGAAAACTAACAACACATT
CTTGACGGAATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCA
CAAGGTAATTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCA
TAATAAGACCTATCAATATCGAACTTGTGGAAAATGCAATCTTCATAGAC
AGTCTTGATGTCATCTCTTACGATTTCTTCTTGATCAAAACCTGTTTTCA
CTTCATTAAACATAGAAATGTTTTGCGTGCCACCGTTAGCTGACGGGTTC
TTCTTGGCTGCCATCAAGTACTCATCGATCACCGATAGTTGGTTAGGATC
CAACGAGTCCAGGTTCTGTTCATCATAGAAAGGCTCGTCGTAAATGTTGG
GCATATTCATGCCAGGGAGAGGTAAATTGGACAGGTGCTCGTCATCCATG
TACATGTCCATATCAAAAGGTGGGAACAGATTCGGTGTCTCTAACGGTTT
cggcattttcattttcccggCTACTTTGTAGACAAGAAGTGATAACTTGT
TCTTGACTTTGATCTTATTTTTCCTTGTTTTCTTGGACTTAATTTTGACA
CCGGCTACCACATATGTACTCCCTTCATTTCCATCAGACATGATGGTAAC
ACACGAAATCTTACATTTACGTTCAAAAGATCCCTTTGTTGTTTCCTCTT
GGTTCGGCTCATTAAATGGTGTGTTAGTGGGTGTGCCCTCGTCCTCAGAC
TTCAGAACGGAGTCATCTACAGAGAAGACGTGAGGTTcagattttttgtt
gttgtcgATTTGGTCATTAGTCAAGTCGGATATGATACAATAACTTTCGC
CTTCGATCACTACATCTTCCAC Run BLAST on NCBI transcript from alignment at scaffold_89:13110..14593- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073259 ID=TCONS_00073259|Name=TCONS_00073259|organism=Clytia hemisphaerica|type=transcript|length=1484bp|location=Sequence derived from alignment at scaffold_89:13110..14593- (Clytia hemisphaerica)
AATACTTCTCCAGAGTTTTGGATGACGGCTTTGTAAGATTACCATCGACA
CAAGATTGGATGTGAAGATGTCCTTTGGTATCACAGATTGCCACAGATGA
TAGTGGTCCACAATACACAATCTTGTGAATTCCATTGTTCTCGATGTTGG
TCAATAGCTTCTTTTCCACCAATCTCGGTACAGTCATGAAGGATAAAGAG
TTATCACTAAGCGCGATCAGGAGTAATGATTTGTCTAAGTTCGGTTCACT
CACAGCGCAATCTGTATTTTCTTCAAATTGTTCTAGTGCAATCAGATTCT
CCAAGATATTTGATGGAGCTGACGAGCACGGTACGTACACTGCATCTTGA
ATGGTGGTTCCGTGCAAAGTTCGACTGTTGACAAGTTTAATCTCTGTTAC
TTGTTTATCGTTAGATATGATCGAGAAAACTAACAACACATTCTTAACAG
AATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCACAAGGTAA
TTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCATAATAAGA
CCTATCAATATCGAACTTGNGGATATTATGGAGAAAACTAACAACACATT
CTTGACGGAATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCA
CAAGGTAATTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCA
TAATAAGACCTATCAATATCGAACTTGTGGAAAATGCAATCTTCATAGAC
AGTCTTGATGTCATCTCTTACGATTTCTTCTTGATCAAAACCTGTTTTCA
CTTCATTAAACATAGAAATGTTTTGCGTGCCACCGTTAGCTGACGGGTTC
TTCTTGGCTGCCATCAAGTACTCATCGATCACCGATAGTTGGTTAGGATC
CAACGAGTCCAGGTTCTGTTCATCATAGAAAGGCTCGTCGTAAATGTTGG
GCATATTCATGCCAGGGAGAGGTAAATTGGACAGGTGCTCGTCATCCATG
TACATGTCCATATCAAAAGGTGGGAACAGATTCGGTGTCTCTAACGGTTT
CGGCATTTTCATTTTCCCGGCTACTTTGTAGACAAGAAGTGATAACTTGT
TCTTGACTTTGATCTTATTTTTCCTTGTTTTCTTGGACTTAATTTTGACA
CCGGCTACCACATATGTACTCCCTTCATTTCCATCAGACATGATGGTAAC
ACACGAAATCTTACATTTACGTTCAAAAGATCCCTTTGTTGTTTCCTCTT
GGTTCGGCTCATTAAATGGTGTGTTAGTGGGTGTGCCCTCGTCCTCAGAC
TTCAGAACGGAGTCATCTACAGAGAAGACGTGAGGTTCAGATTTTTTCTT
GTTNCCTCAGACTTCAGAACGGAGTCATCTACAGAGAAGACGTGAGGTTC
AGATTTTTTGTTGTTGTCGATTTGGTCATTAGTCAAGTCGGATATGATAC
AATAACTTTCGCCTTCGATCACTACATCTTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073259-exon-scaffold_89-1575043694:13260..14593 | TCONS_00073259-exon-scaffold_89-1575043694:13260..14593 | Clytia hemisphaerica | exon |
| TCONS_00073259-exon-scaffold_89-1575043694:13110..13197 | TCONS_00073259-exon-scaffold_89-1575043694:13110..13197 | Clytia hemisphaerica | exon |
| TCONS_00073259-exon-scaffold_89-1510915933:13260..14593 | TCONS_00073259-exon-scaffold_89-1510915933:13260..14593 | Clytia hemisphaerica | exon |
| TCONS_00073259-exon-scaffold_89-1510915933:13110..13197 | TCONS_00073259-exon-scaffold_89-1510915933:13110..13197 | Clytia hemisphaerica | exon |
| TCONS_00073259-exon-scaffold_89-1491911889:13260..14593 | TCONS_00073259-exon-scaffold_89-1491911889:13260..14593 | Clytia hemisphaerica | exon |
| TCONS_00073259-exon-scaffold_89-1491911889:13110..13197 | TCONS_00073259-exon-scaffold_89-1491911889:13110..13197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:13110..14593 - |
Blast
The following BLAST results are available for this feature:
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