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TCONS_00073259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073259
Unique NameTCONS_00073259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073259 ID=TCONS_00073259|Name=TCONS_00073259|organism=Clytia hemisphaerica|type=transcript|length=1422bp
AATACTTCTCCAGAGTTTTGGATGACGGCTTTGTAAGATTACCATCGACA
CAAGATTGGATGTGAAGATGTCCTTTGGTATCACAGATTGCCACAGATGA
TAGTGGTCCACAATACACAATCTTGTGAATTCCATTGTTCTCGATGTTGG
TCAATAGCTTCTTTTCCACCAATCTCGGTACAGTCATGAAGGATAAAGAG
TTATCACTAAGCGCGATCAGGAGTAATGATTTGTCTAAGTTCGGTTCACT
CACAGCGCAATctgtattttcttcaaattgttCTAGTGCAATCAGATTCT
CCAAGATATTTGATGGAGCTGACGAGCACGGTACGTACACTGCATCTTGA
ATGGTGGTTCCGTGCAAAGTTCGACTGTTGACAAGTTTAATCTCTGTTAC
TTGTTTATCGTTAGATATGATCGAGAAAACTAACAACACATTCTTAACAG
AATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCACAAGGTAA
TTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCATAATAAGA
CCTATCAATATCGAACTTGNGGATATTATGGAGAAAACTAACAACACATT
CTTGACGGAATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCA
CAAGGTAATTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCA
TAATAAGACCTATCAATATCGAACTTGTGGAAAATGCAATCTTCATAGAC
AGTCTTGATGTCATCTCTTACGATTTCTTCTTGATCAAAACCTGTTTTCA
CTTCATTAAACATAGAAATGTTTTGCGTGCCACCGTTAGCTGACGGGTTC
TTCTTGGCTGCCATCAAGTACTCATCGATCACCGATAGTTGGTTAGGATC
CAACGAGTCCAGGTTCTGTTCATCATAGAAAGGCTCGTCGTAAATGTTGG
GCATATTCATGCCAGGGAGAGGTAAATTGGACAGGTGCTCGTCATCCATG
TACATGTCCATATCAAAAGGTGGGAACAGATTCGGTGTCTCTAACGGTTT
cggcattttcattttcccggCTACTTTGTAGACAAGAAGTGATAACTTGT
TCTTGACTTTGATCTTATTTTTCCTTGTTTTCTTGGACTTAATTTTGACA
CCGGCTACCACATATGTACTCCCTTCATTTCCATCAGACATGATGGTAAC
ACACGAAATCTTACATTTACGTTCAAAAGATCCCTTTGTTGTTTCCTCTT
GGTTCGGCTCATTAAATGGTGTGTTAGTGGGTGTGCCCTCGTCCTCAGAC
TTCAGAACGGAGTCATCTACAGAGAAGACGTGAGGTTcagattttttgtt
gttgtcgATTTGGTCATTAGTCAAGTCGGATATGATACAATAACTTTCGC
CTTCGATCACTACATCTTCCAC
Run BLAST on NCBI

transcript from alignment at scaffold_89:13110..14593-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073259 ID=TCONS_00073259|Name=TCONS_00073259|organism=Clytia hemisphaerica|type=transcript|length=1484bp|location=Sequence derived from alignment at scaffold_89:13110..14593- (Clytia hemisphaerica)
AATACTTCTCCAGAGTTTTGGATGACGGCTTTGTAAGATTACCATCGACA CAAGATTGGATGTGAAGATGTCCTTTGGTATCACAGATTGCCACAGATGA TAGTGGTCCACAATACACAATCTTGTGAATTCCATTGTTCTCGATGTTGG TCAATAGCTTCTTTTCCACCAATCTCGGTACAGTCATGAAGGATAAAGAG TTATCACTAAGCGCGATCAGGAGTAATGATTTGTCTAAGTTCGGTTCACT CACAGCGCAATCTGTATTTTCTTCAAATTGTTCTAGTGCAATCAGATTCT CCAAGATATTTGATGGAGCTGACGAGCACGGTACGTACACTGCATCTTGA ATGGTGGTTCCGTGCAAAGTTCGACTGTTGACAAGTTTAATCTCTGTTAC TTGTTTATCGTTAGATATGATCGAGAAAACTAACAACACATTCTTAACAG AATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCACAAGGTAA TTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCATAATAAGA CCTATCAATATCGAACTTGNGGATATTATGGAGAAAACTAACAACACATT CTTGACGGAATCGTTCTCCACAAACCCAACCTTTTGTTTTAGTATCACCA CAAGGTAATTGGAAACAACGATCAGATCTGAGATGACCATCGATAAATCA TAATAAGACCTATCAATATCGAACTTGTGGAAAATGCAATCTTCATAGAC AGTCTTGATGTCATCTCTTACGATTTCTTCTTGATCAAAACCTGTTTTCA CTTCATTAAACATAGAAATGTTTTGCGTGCCACCGTTAGCTGACGGGTTC TTCTTGGCTGCCATCAAGTACTCATCGATCACCGATAGTTGGTTAGGATC CAACGAGTCCAGGTTCTGTTCATCATAGAAAGGCTCGTCGTAAATGTTGG GCATATTCATGCCAGGGAGAGGTAAATTGGACAGGTGCTCGTCATCCATG TACATGTCCATATCAAAAGGTGGGAACAGATTCGGTGTCTCTAACGGTTT CGGCATTTTCATTTTCCCGGCTACTTTGTAGACAAGAAGTGATAACTTGT TCTTGACTTTGATCTTATTTTTCCTTGTTTTCTTGGACTTAATTTTGACA CCGGCTACCACATATGTACTCCCTTCATTTCCATCAGACATGATGGTAAC ACACGAAATCTTACATTTACGTTCAAAAGATCCCTTTGTTGTTTCCTCTT GGTTCGGCTCATTAAATGGTGTGTTAGTGGGTGTGCCCTCGTCCTCAGAC TTCAGAACGGAGTCATCTACAGAGAAGACGTGAGGTTCAGATTTTTTCTT GTTNCCTCAGACTTCAGAACGGAGTCATCTACAGAGAAGACGTGAGGTTC AGATTTTTTGTTGTTGTCGATTTGGTCATTAGTCAAGTCGGATATGATAC AATAACTTTCGCCTTCGATCACTACATCTTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045449XLOC_045449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073259-exon-scaffold_89-1575043694:13260..14593TCONS_00073259-exon-scaffold_89-1575043694:13260..14593Clytia hemisphaericaexon
TCONS_00073259-exon-scaffold_89-1575043694:13110..13197TCONS_00073259-exon-scaffold_89-1575043694:13110..13197Clytia hemisphaericaexon
TCONS_00073259-exon-scaffold_89-1510915933:13260..14593TCONS_00073259-exon-scaffold_89-1510915933:13260..14593Clytia hemisphaericaexon
TCONS_00073259-exon-scaffold_89-1510915933:13110..13197TCONS_00073259-exon-scaffold_89-1510915933:13110..13197Clytia hemisphaericaexon
TCONS_00073259-exon-scaffold_89-1491911889:13260..14593TCONS_00073259-exon-scaffold_89-1491911889:13260..14593Clytia hemisphaericaexon
TCONS_00073259-exon-scaffold_89-1491911889:13110..13197TCONS_00073259-exon-scaffold_89-1491911889:13110..13197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:13110..14593 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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