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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073254 ID=TCONS_00073254|Name=TCONS_00073254|organism=Clytia hemisphaerica|type=transcript|length=1568bp
TGCTGCGATATTTCCACTCCAGAATTTGTGATGCCAAGCTAACAAGATGG
ATCCAAACATCCAAAAGAACAACCAACTAAGTGAATACGCCAATAAAAAG
ATGTGCTGAAAAAAAATGCATGCACATCAAATCACTTCGTTGTCAGTAGT
CTTGGTACGCCCTTGATGATATCACTGACTTCTGTAAACCCCGGCCCAag
ctatatctgccatcttATGTTGATCGGCGTttctttgaaagtggtacccg
taACTAGAAGACATTGTAGTGTTACAACTTTTCCTAACGACAGACTACGC
TACATCACTTATATCTAAgcaaaagtagatctagcgctttCGATGCATTA
CACCACTATAAAGATCAGTGGATGATTATATTTGTTGCATATTTACGAAA
TACGAATTATAAGGTCCCAGAAGTACGAGGTTGCTGTAGTCCTTTTTAAA
GCggaatcttttcaaaatttggaaattttaatgGTATTTGATAACATTTC
TCTtgtgaatatcttttcaacaagcacaaaaacctttttttagttCGAAT
TTCATTTAAAGTTACAGCTTTTGTTTCCATCGCAGATTATTTTTTAGACC
AACTTTAGTAGTTCAAAAGACGTACTGTTAAGTAGCGTAGTATTCTTGGG
AAGTTCTTTTCTCtgtaatttcataaaaaaccacANCAAAAGACGTACTG
TTAAGTAGCGTAGTATTCTTGGGAAGTACTTTTCTCTGTAATTTCATAAA
AAGCCAAGGGGCAAAAACAACGTGCTCAAAATTCTTACCCAACCAAACAA
TCTTGTGAGTCGATTGAAAATGCATTTATTGAAACATCCCAAAATATtaa
acaaaatgacaaaaatgaccCATATCCAGCAAAAGATACCGATAATGAGA
AAAATGATGTATCTCGGTTTGACGTTTATGACGTAACCACCTTGTATGTT
GTCAAATGCAGCAGCACAAATAATCCATGCGATTAGAACAGTGAACAGTa
cgaagaaaataaataaaaatacttcagggttttttacaaaaataatggaT
CCCTAGAAAAATAGAAGATGGGAAAACTCAGGAAAAGTTCCAAAAACTTG
attcaataatattttaacCCTCTATTTGATGGAATAAGAATAGTGATGAG
ACACAATTTACCCCTCTATTGTATATTGACCTAAACATTCAAACGCACCA
CAATGACAAAGGTTTGGATAATGTTGAGGAACAGCCACTATTTGAAATAA
GAGAAAACCAAACTGGCACTTAATCTACAAAAACTTTTCCACAGTTTTTA
TAGGCGGCCCTGTTtgacttttttcatttcattagtTTATGATAGAGTAA
GCTCTGCTGAAAATTCTAAACACTTACAAATTCTATGATCTTTAGTACGC
CTTCAAAAGAACAAATAAATCTTATGTTTGGTGTACATGAATTATCATTT
CCATCCCTTTCCTCCTGACCATTCGACATTttacatataATGAACAGATG
AACAAAACTTTTAGTTTTTTCGTTTTCTCACTCGTCTTCACAATCAGTTT
GGAACTCTATCAGAATCT Run BLAST on NCBI transcript from alignment at scaffold_89:220051..226223+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073254 ID=TCONS_00073254|Name=TCONS_00073254|organism=Clytia hemisphaerica|type=transcript|length=6173bp|location=Sequence derived from alignment at scaffold_89:220051..226223+ (Clytia hemisphaerica)
TGCTGCGATATTTCCACTCCAGAATTTGTGATGCCAAGCTAACAAGATGG
ATCCAAACATCCAAAAGAACAACCAACTAAGTGAATACGCCAATAAAAAG
ATGTGCTGAAAAAAAATGCATGCACATCAAATCACTTCGTTGTCAGTAGT
CTTGGTACGCCCTTGATGATATCACTGACTTCTGTAAACCCCGGCCCAag
ctatatctgccatcttATGTTGATCGGCGTttctttgaaagtggtacccg
taACTAGAAGACATTGTAGTGTTACAACTTTTCCTAACGACAGACTACGC
TACATCACTTATATCTAAgcaaaagtagatctagcgctttCGATGCATTA
CACCACTATAAAGATCAGTGGATGATTATATTTGTTGCATATTTACGAAA
TACGAATTATAAGGTCCCAGAAGTACGAGGTTGCTGTAGTCCTTTTTAAA
GCggaatcttttcaaaatttggaaattttaatgGTATTTGATAACATTTC
TCTtgtgaatatcttttcaacaagcacaaaaacctttttttagttCGAAT
TTCATTTAAAGTTACAGCTTTTGTTTCCATCGCAGATTATTTTTTAGACC
AACTTTAGTAGTTCAAAAGACGTACTGTTAAGTAGCGTAGTATTCTTGGG
AAGTTCTTTTCTCtgtaatttcataaaaaaccacANCAAAAGACGTACTG
TTAAGTAGCGTAGTATTCTTGGGAAGTACTTTTCTCTGTAATTTCATAAA
AAGCCAAGGGGCAAAAACAACGTGCTCAAAATTCTTACCCAACCAAACAA
TCTTGTGAGTCGATTGAAAATGCATTTATTGAAACATCCCAAAATATtaa
acaaaatgacaaaaatgaccCATATCCAGCAAAAGATACCGATAATGAGA
AAAATGATGTATCTCGGTTTGACGTTTATGACGTAACCACCTTGTATGTT
GTCAAATGCAGCAGCACAAATAATCCATGCGATTAGAACAGTGAACAGTa
cgaagaaaataaataaaaatacttcagggttttttacaaaaataatggaT
CCCTAGAAAAATAGAAGATGGGAAAACTCAGGAAAAGTTCCAAAAACTTG
attcaataatattttaacCCTCTATTTGATGGAATAAGAATAGTGATGAG
ACACAATTTACCCCTCTATTGTATATTGACCTAAACATTCAAACGCACCA
CAATGACAAAGGTTTGGATAATGTTGAGGAACAGCCACTATTTGAAATAA
GAGAAAACCAAACTGGCACTTAATCTACAAAAACTTTTCCACAGTTTTTA
TAGGCGGCCCTGTTtgacttttttcatttcattagtTTATGATAGAGTAA
GCTCTGCTGAAAATTCTAAACACTTACAAATTCTATGATCTTTAGTACGC
CTTCAAAAGAACAAATAAATCTTATGTTTGGTGTACATGAATTATCATTT
CCATCCCTTTCCTCCTGACCATTCGACATTATCTAAAAAACCGAAAAAAT
CATAGTTATATTCCAGAGTGTGAACAAACAAAGGCCTTACTGTAGAAAAG
GGTTCCCCAGTACAAAAgccttattttatcctaaatattcaataaataat
GGTTTTGAACATAAATATGTACATTTaacataaaaattattttgtattaG
ACCTGTATCAATTTCTATGACACATAATGTCAGCAATATCATCAtatcaa
ggtgtgaaaattctTATGTAAAAATTTCATGTCCAAAGCTTTAtcatttc
aggagctattagcatAAAAGTTTCCCTTCCAAACAGAAACCCCCTAGTAC
GAACAGTGTTAAAGGGGACGTCTGCTTTGGTAGATCATTTCAGTCATAAT
TCTATGCCAGACAGctaaattagtaaaaaaaattttgcagaaaaaacGAA
CTCAAAATCTTTAGTTTTGACTGACATATTCAGATTTTAGTGTTTTACAA
TTTCCTCTCTTTTACCTGATTTTTGACGTAACCTTTGTTcgtaatttata
agaacagaaatcTTGTCTGTAGTCTAAATTACTGTATTTAAACAACtttt
gataagaacattttaattcaAACTTCTAATTTCGATGATTTTTCCAGTCC
ACAACAAtataaatatttcagttttCTATGAAGATGTTGGAGTAAGCTTT
CATTGACAAAATGTTGGGAAAAAGATGTTTTAACGACTTTAAATGATCTT
GCACATCTCTGActtacttaaaattttcttataaaaatgccaGCTGCACA
GAAAGAGGAGTTAATCTCGTTTACTTGAAAGAACATAGAAAACATATAAC
ATAAGCtacgtcataaattttgaaaaagagggaTTTTTTAAATGGCCATA
GAAAGTGatagaaaaaaaatctcttgaagTGAGATAGCTCATTTTAATCT
CCCTggaataatttttccaaaaattctaaaaaaacaatacctaaaatcag
accagacgtcccctttaaagcatttattgaaaaaagacCAAGTTATTATG
ATGTCACGGCTGGAAAGAAGTATAATGTTCTCCATAGCTGttagaaaaat
tgatttttagcctacaagaagttatagcccaaaaacctgtattgTGACAT
ATTACGACATCATAAAGATTACTACCTAACATTACGTCAAACTTAAAACT
ATTTGTGAtttcaatatgaaattttgacgCTATAAattgtaattcttttt
tttttaatgatgacATCATATTTTAGCCATGTTCAATTTTTGgctataaa
aaatttcaaaaattttgaaaggaaagtTCTTTTTACATTAATATCTAtct
atggtcaaaatttgacattGATACAACTTTTGTACTttacaagatattca
aatttcaacAACAATTTCAGTAGTTTGTGGTGacaaagtgctctatacca
agGTAGagctaaataaataaatcaccTCTAAACGTGAGCTCGTTAACACA
AAATCGGAATTGATTTCAAAATGCCAACACGTAAATAAATTCCTatattg
aaaaattacaaaacagtCCCCCCCAGATGTGTGATAATTTTAACATTTAA
ATTACAATGCACTTATCAATACATTTTATTTCTCTAGACACAATTTTTAC
CATTCATATTTCTTTAGCCAATCAACtcaaattttattacttttaatgAC
TTTTATAGCCTGTTAATTACTTTCTAATATGTTTTACATAGTagaatttg
ttcaaattttttattcatacATCTGATGATCGTATTTGGCGTGAAACATT
CtgtaatgttttaattttttgaagaaaaataaatttcagaaaTATTAAAA
TTTCTAGATTTATGGTGTAATATTATAATGTTTATTGGGCGGTTCCAGTT
ATAATCTGTTACCCCCTGTGGAGGAAATGgatttcaatttcaaacaattt
acttttaaaaaactTCAGGATTTCTGTAACATTCAagaatttttaaggaa
aaatcttAGATTTTCTGATAGGGATGACCAAATAATTAGGAAAATCTTGC
ATTTTCTGgaacctttttcaaaatttctcaggatttccaagtgaaaaaaa
attccaaaaaacggTGTCGTCCACAGGGGGTAATGGTTTTTTTGGGACAT
CCCAATACATGATAATACTACAGGTTTTTAGACTATAACTTCTTTTTATC
CAGGGGATGTCAACCGAACCCAATCGAACCAATTTTATTAATCGAACCAT
CAAACTCAATCGAACTTATTTGAAGGATAGGACATTTGATTACCAAACTA
AATCGAACAGTAATAGAGCTTTACCGTGGAAATATATTGATTAGTTAGAT
TAAAAATACAGTTCGATGTTGTTCGGTGTATGTTCGAGTTGTTCGACGAG
TGTTCGAGTAGTATCTTGGTTCTTTTCCGTAATCATTCTGCTATTCTCAG
GTATTATATACTAGAGTAGCAAATATATTGCGAAAATTGCCTATTATTGA
ATGAATGTCTAACTATGATCAAACCTATCAAATTACAATCGGACCTATCA
AACTATAATCGAATAGTTATCAAACTTTAATTAACAGATCAATCGAACAA
GTCATTGAACTTTACCGAAATTTCTTGGTTTGATTACTGTTCTAGTAGTT
GGTTTGGTAACTGAACACCTATTGTTGGATAGTTGTTTGGAGAACGCGAT
GacctattgaataactaattactccacaataGTTACCTaaagacaagata
atttatcatatttttattggctgagggaaagttatgtaccttaaaggaag
aaattttggctgaaagaaaatttggcggatttggcagatttgactgaaat
ctgccaaattaagttcctgccaaaatttcttttttccaccaaccgccaaa
ttaaattcccgccaaattaaacattttgaaaatatgatctcttttaaggt
gttttcgctatttttttgctgttttgacgccatcttaaggttaaattttt
aagcgaccgccaaattaaattcccgctaaatttagatttttcgtccatcc
gccaaattaaattccctctgaaaaaacttttttggccatccgccaaatta
aattcccgccaaaatttcttcttttaaggtatgtgaagtaatttgttatt
caataatAGGACGttgcgttctccaaaacaactgttaaatttgattaagt
ttgattagtttggtaatcaaacagttccattgacatcccctggtctTAAA
GGCTcaaagtttctttgtttttcattttcccatttATGggaaagaatgaa
attttttagAAGATGCTTTATTTGATATGAGGATTTCCATTTCCATAAAA
TCGCGATTCCCCATATCATGGTTCCGAAATAATGGTAGCTATtggtaatt
cctttgttcttttgctattttcttttgttctatgtgaCGTAAAGATACTT
CACAAATCAAAGTACTTCCACAATCTGATAGAATGACAATCAAACAAAAG
CAAACctcaatcaaacacaatcgaatatcaatcaaatATGGAAAATTGTG
GTGATATTAAAATATTGGAGATTCGATGtgttgaaaaaaacaaatcaact
tTATGACGCGGTTTGTTTATTAAATGTTCTCGGTGTGAATCGAGCTATGT
CGGGCAGACTGCCAGGCACTTAATTACCAGGATCAAAGAGCACCGCAACG
TAAACACTCCAGTGGGaagacattttcaaaattgtaattgtgaaattttg
atggaaaatgTAATGATTCTAGATCGCACAATTAAATCTGAACAATGCTT
AATGTCCCTTGAGGCACTGTGGATTAATAAAGTAAAACCAAAACTGAAAA
CCAAAGATGAATATAAAAGTAGAACTCTTACAATAAAGATTTAATAGATT
TTATTGCCTAGGGGAGTTGTAGTGGAATTCACTTTTGATTTAGTGaactt
agattttgatttttcagttACATNACGTCATTTCAGTCTTTGGTGTCGTG
GAGTTTGAGGGTGAACTTATTCACATGCCGACATTTCGAGATCAGTTCAT
TCCTTGAATTTAACAGTTTCTCAGGTTGGTCGAATGTggcaatttctaat
ttttcgctAAGGCAGAGTGAACATTCCAGCGAAGCACGATTGAACGGTGG
ACATTTACGGACTGTCTTCCAAGTAATCTTTGGGGCACGATTCTTTCGTT
TCAACCTCCAAATCTCCTTGGAAAGTTCAGTTTCTTTTTCGTACTTTTCG
TTGGCGAAGGATGACTTGTGGTTAGCGTATCGTTTCTTGAACTTAGGTTC
GGCTAACCCAAtgtatctatctatatatttcagTAGTTAACAACATAAAT
GTTTGTTCTCCCTACATACAGACATATAAAAGCATTaacaaaaataagat
aaatgaAATTGGTTTAAAAATGTATGTATGTTCAAAAGACTGTGGCGATC
TCCCAGAAAAGACTAGCTATTCTTGCGTATATAATTCTTGCTCTATCTAC
TGTAGGAAATATTGAAGATTCCACTCTCTAGCTAATTCCTCAGGCTTTAA
GTTCAACCTCATCAAGTTGATAGATCACTGATCGAAGGTTGAAAAGGATT
GCCCTGTAAAAAGTCatagaaaagtcaaaaaatacttacatataATGAAC
AGATGAACAAAACTTTTAGTTTTTTCGTTTTCTCACTCGTCTTCACAATC
AGTTTGGAACTCTATCAGAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073254-exon-scaffold_89-1491911889:220051..221530 | TCONS_00073254-exon-scaffold_89-1491911889:220051..221530 | Clytia hemisphaerica | exon |
| TCONS_00073254-exon-scaffold_89-1510915933:220051..221530 | TCONS_00073254-exon-scaffold_89-1510915933:220051..221530 | Clytia hemisphaerica | exon |
| TCONS_00073254-exon-scaffold_89-1575043694:220051..221530 | TCONS_00073254-exon-scaffold_89-1575043694:220051..221530 | Clytia hemisphaerica | exon |
| TCONS_00073254-exon-scaffold_89-1491911889:226136..226223 | TCONS_00073254-exon-scaffold_89-1491911889:226136..226223 | Clytia hemisphaerica | exon |
| TCONS_00073254-exon-scaffold_89-1510915933:226136..226223 | TCONS_00073254-exon-scaffold_89-1510915933:226136..226223 | Clytia hemisphaerica | exon |
| TCONS_00073254-exon-scaffold_89-1575043694:226136..226223 | TCONS_00073254-exon-scaffold_89-1575043694:226136..226223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:220051..226223 + |
Blast
The following BLAST results are available for this feature:
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