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TCONS_00073253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073253
Unique NameTCONS_00073253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073253 ID=TCONS_00073253|Name=TCONS_00073253|organism=Clytia hemisphaerica|type=transcript|length=376bp
ACCTGGGTTGAATTTTCTTGCATTGAAAATGCATTGGTTTTCTACTTGTT
TTTCTTCTGAAGGTTTTGCTGTAGGTTTTCGCTGAGTCATCACTTTTTCA
CAAGGTGTTAAAGACTTGATCAATCTACCCGACGGACCACAAGTAATTTG
CCAACATGTTTCACcattagggaaattcccacgatcgatgacgtcattat
aaGCAAATTCAAATCCCGAAGGAAAACAATCTTTGTGAGGACGACTTGTG
ATTGGTTGTTGGGTTGTGGTTGCTATGGGAACGCTTTGACATAATttgac
aacaacaacaaagagaAGAAGGTGATGTGTCGTAGTaacgaaagaaaaaa
tctttttatgaatgaaaataaaaatc
Run BLAST on NCBI

transcript from alignment at scaffold_89:195774..196779+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073253 ID=TCONS_00073253|Name=TCONS_00073253|organism=Clytia hemisphaerica|type=transcript|length=1006bp|location=Sequence derived from alignment at scaffold_89:195774..196779+ (Clytia hemisphaerica)
ACCTGGGTTGAATTTTCTTGCATTGAAAATGCATTGGTTTTCTACTTGTT TTTCTTCTGAAGGTTTTGCTGTAGGTTTTCGCTGAGTCATCACTTTTTCA CAAGGTGTTAAAGACTTGATCAATCTACCCGACGGACCACAAGTAATTTG CCAACATGTTTCACcattagggaaattcccacgatcgatgacgtcattat aaGCAAATTCAAATCCCGAAGGAAAACAATCTTTGTGAGGACGACTTGTG ATTGGTTGTTGGGTTGTGGTTGCTATGGGAACGCTTTGACATAATttgac aacaacaacaaagagaAGAAGGTATCCTGGAAAAAGAtatttgacttcaa attttaaacAGCTTTCTACGACAATGCCCTATGGTGTTTTCATAGCATAG TTTACGAAAGACAAACTGCTAGGTGTGATTAGAAAAACCAAACCACATTA TCGGACTACGATGAGTGTCAGATAGGTATTCTTTCGCCGTTGATTTTACC TTTCGCCCTGGAATTTATTGTGCAAAGGATctttgacacccctgtctcag tgaatCAGCGAGGTAAAGTTAATACGATACAGAGCTATATATAAAGGCAA ACGCCATATTTGGAATTTATTGACAATCTTtgacacacccctgtgtcata gacccactgggacaTTGAATTTCCTTCCATCCTTATTGAAATTCAAGGAG AAAATCGGCCTCCAAACCCACCCCACTAGATCTTTCGAACAATAGgattt ctattcccattgggaCTTCCATATAGAAATTTTAACCCCCtctcttggaa aaattcttaccgtgactgtgagacaggggtgtttagaCAAAATCTTACCT TGTCTTCGAACAACCATCTTGTTACTTCTTACAATGTTGATATACAGCat aaatgaataaatttgaCTAATCGCTAAAGATGTCCTGTGTTTATTTTCAA GGTGATGTGTCGTAGTaacgaaagaaaaaatctttttatgaatgaaaata aaaatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045445XLOC_045445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073253-exon-scaffold_89-1491911889:195774..196094TCONS_00073253-exon-scaffold_89-1491911889:195774..196094Clytia hemisphaericaexon
TCONS_00073253-exon-scaffold_89-1510915933:195774..196094TCONS_00073253-exon-scaffold_89-1510915933:195774..196094Clytia hemisphaericaexon
TCONS_00073253-exon-scaffold_89-1575043694:195774..196094TCONS_00073253-exon-scaffold_89-1575043694:195774..196094Clytia hemisphaericaexon
TCONS_00073253-exon-scaffold_89-1491911889:196725..196779TCONS_00073253-exon-scaffold_89-1491911889:196725..196779Clytia hemisphaericaexon
TCONS_00073253-exon-scaffold_89-1510915933:196725..196779TCONS_00073253-exon-scaffold_89-1510915933:196725..196779Clytia hemisphaericaexon
TCONS_00073253-exon-scaffold_89-1575043694:196725..196779TCONS_00073253-exon-scaffold_89-1575043694:196725..196779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:195774..196779 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.207164 0 0 1.10319 1.79682 0.471368 1.13864 0 0 0 0 0.984632 1.23826 0.329616 0 2.19999 0 1.25012 1.56933 3.51105 0.95866 0 2.44579 1.32347 5.83504 1.58954 0.580474 2.80689 1.54384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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