Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073252
Unique NameTCONS_00073252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073252 ID=TCONS_00073252|Name=TCONS_00073252|organism=Clytia hemisphaerica|type=transcript|length=3023bp
GATGAAGTTGAGGCTGTAACAATCGGATGGGCGATTGGAGATGAAAAAGG
AATATTGTAAAAAATCGGAGGAAACTTCGTAACATAATTTCTGACGGATG
TTTCGGAAGTTTAGATNAGGAATATTGTAAAAAATCGGAGGAAACTTCGT
AATATAATATCTGACGGATGTTTCGGAAGTTTAGATGGTGGAATTTTTAC
AAGcatttatttgatttggttggtcgttaacctgtaataaaacaattttg
ttactttttctaaagaacgcgtcatctctgttacttttaatgaccaatta
atgaagtatcttataaaaactccagaacaCCCCGAAAGTTTAGATGGTAG
AATTCTCTTGTTCTGGtttagacggtttgacggaataTAACGATCAAACT
GACACATCTACGGAATCGGGTATGCCCTTAAATCCCATTCTGATTAAGAT
AAAACCACTCCTGCAAATATTAGAGGCAAGTTAAGAGGCCAAGTTAGTTT
CTTACATCAGAGGCATGtgttatttttgtaaacaaaagaaaCTTAATAAT
AACTCATTTGTTAGTGGTTAATGAGAGAGTTAGCCTTTAATTGGATGTTT
AATAGCTTCCTTTCTTAATTTCTTGAGAACAAGTTTTCTTGATAACTTGT
AATACATTGTTTTGCATACATGGTCATGACCACGATTGAATGCTGCTTTT
CCTGATATTCAATAATCGAACGAAGATTTAATCGAATTGGCtttattttt
ggatttgaaatCTTGGTGAAAACGCATCAATACTTCTTTGCAAACCTACT
TTTTTTAACTCAGAAACTGATAAGATTCAAAGGTTCAGTGCCTTTTATAG
ACTTTTCAGCACAAAGTGAAGACCTCTCCTTAGCAAAACCAAACATATTA
TTGAAGACAAGAAAGAAATACTTTAAAACAaacaagttttttctttcaaa
agggaTTGACCAATATGAAGGATATGAAAGTAACGTTTATGTTTCTGGTA
ATGTTTGTGGTAACGATGGTCCATATCTTCTCCAAAACCTATGTTGAAGA
ATTCCGTCTATCTGTCCGTCTGTCTACTAAATCTGTCACCAATATCACAT
TGCCATCAGATGAAGATGTTGTACAGACCATCATGAATTTGAAAAAGCTG
AAATCAATGTCTGGACGTTTGGAAATCGAAACATCAAAACAGATCAATGT
ACTGGATAAGAAAGCAAGTGTTTTCATGAAGATCGATTCAAAATTGGGCG
ATTATACTCCGAACAGTGATACACAGATCTCCTGCGCCAGTGACAAAACT
GTTAAACTTTTAGTTTTAGTACAAACACCTTATAAAGATATCACTAGAAG
GATGATTATTCGGGAAGCTTGGAAGCAACAAATGGACCATGATTCGAACC
GTTTGAATTGGAAAATGGTATTTGTTGTCAGTTCGCCAGATCAGGGatgg
gaagaaaaaaatttctttcgtACTGAGATGAAATTCAAAAGAGATATGCT
ACTTGTTGAACGTCCAGAACGCCAAAGCGAGTCTGCTAAGAAGCTTTATT
CTGCACTCCGCTGGTCGGCTAATGGATGCAAATTTGAATATTTGTTAATG
ACAGATTCTAACACAAAGCTGAATTTCAAAGCTATCTACAACATCATGCA
TTCACCAAACATGACTAAAGGAAACCTTGTAATGGGGCACAAACTAACTG
AAAAATCATCCATAACTTTTCGTCCAGTCAAAACCTCAATCACCAAAACT
GAATTGATTTCAAGATTCTCCAGCACTCAATTCCTAATGTCCAGGGATGT
TTTGACCAAAGTCCTCCACCTTTTGAGATGGTATTCTACCCATGGACGTG
TCCAGCAACCAATGGCCATGCTAGCTCTGGCAATGAAAGATCGGCTTATA
TCTCCACTGGAGTATAAACATTTCTTGACCAAACTGCCTAATGATTGCAA
AGTCACAATCGAAAAAACATTGTTGATGCAAACACACAATGACGATTGTT
TTAGAAACCCTTTGATGAAGTAGTGTCACCACACCACACTGGCACGCAAT
GTTATTTTAATaatcatctaacgttatatggacgttgtgaacattataTA
AACGTTTAAAGAGCATAGATTATTTTAAGAATGTGAATATTTTAGTGTAA
TTTGTTATTATTTATCCAAATCATGTTGGtattaaatcaaaaaataaggC
TTTACAGGAACGCTGTAAGGGCTCCAAACATATTTTCCCGGGTACCTATT
AACCAATCCCCCCGGTtgataaatgtttttaaaaaattttccttttactT
TTTCAGCTGgtaaacaacgttgtttcaacgttcatttaacgttttatgga
cgttgtgaacgttagataaacgttgaaacaacgttgtgtgccagctgggg
tagGATCATTTCCCgacttttatataattttaacaATTTCCACACACCCG
CTTGTTCCAGACCCCCAGCTCAGGTGCCCACAAACACACCTGTCTCAAAG
CCCCGGGGGAACTTTTtctctcagtggggataaaaattcctaataaaatc
ccaatgggaatagaaattcctttgttccaaggttaaaagatttagtggga
atggttttaaagtccaatttttaaacattaaatttcgaatgggacgaaaa
aaaaattaatttccaagtggggccatagtggggctgaaattctaacGTAT
TTCTGTCAATCTTTCCAGTGTGGCTGggctcccagcgggtctgtgacaca
ggggtcaTCGGCATTTCCTTTGTCGAATGTTGCACAGATTTTCCATGAAA
TGGCTTTATTGATTCGAAATGAGGATAcattttcaagccaaaaagGAATA
TTTACTTCTTTCACtttgtaatttgattttaatatttttgaataatttta
taTGACGAAGAATGTaatgcaatgtttttgtttttaaattgcaattattt
ttattttgtaaaaaagaaaaacttaagcATTTGAGAAAATATACAACAAT
TAGTGTATGCTAAATGAAAAATG
Run BLAST on NCBI

transcript from alignment at scaffold_89:147551..150573+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073252 ID=TCONS_00073252|Name=TCONS_00073252|organism=Clytia hemisphaerica|type=transcript|length=3023bp|location=Sequence derived from alignment at scaffold_89:147551..150573+ (Clytia hemisphaerica)
GATGAAGTTGAGGCTGTAACAATCGGATGGGCGATTGGAGATGAAAAAGG AATATTGTAAAAAATCGGAGGAAACTTCGTAACATAATTTCTGACGGATG TTTCGGAAGTTTAGATNAGGAATATTGTAAAAAATCGGAGGAAACTTCGT AATATAATATCTGACGGATGTTTCGGAAGTTTAGATGGTGGAATTTTTAC AAGcatttatttgatttggttggtcgttaacctgtaataaaacaattttg ttactttttctaaagaacgcgtcatctctgttacttttaatgaccaatta atgaagtatcttataaaaactccagaacaCCCCGAAAGTTTAGATGGTAG AATTCTCTTGTTCTGGtttagacggtttgacggaataTAACGATCAAACT GACACATCTACGGAATCGGGTATGCCCTTAAATCCCATTCTGATTAAGAT AAAACCACTCCTGCAAATATTAGAGGCAAGTTAAGAGGCCAAGTTAGTTT CTTACATCAGAGGCATGtgttatttttgtaaacaaaagaaaCTTAATAAT AACTCATTTGTTAGTGGTTAATGAGAGAGTTAGCCTTTAATTGGATGTTT AATAGCTTCCTTTCTTAATTTCTTGAGAACAAGTTTTCTTGATAACTTGT AATACATTGTTTTGCATACATGGTCATGACCACGATTGAATGCTGCTTTT CCTGATATTCAATAATCGAACGAAGATTTAATCGAATTGGCtttattttt ggatttgaaatCTTGGTGAAAACGCATCAATACTTCTTTGCAAACCTACT TTTTTTAACTCAGAAACTGATAAGATTCAAAGGTTCAGTGCCTTTTATAG ACTTTTCAGCACAAAGTGAAGACCTCTCCTTAGCAAAACCAAACATATTA TTGAAGACAAGAAAGAAATACTTTAAAACAaacaagttttttctttcaaa agggaTTGACCAATATGAAGGATATGAAAGTAACGTTTATGTTTCTGGTA ATGTTTGTGGTAACGATGGTCCATATCTTCTCCAAAACCTATGTTGAAGA ATTCCGTCTATCTGTCCGTCTGTCTACTAAATCTGTCACCAATATCACAT TGCCATCAGATGAAGATGTTGTACAGACCATCATGAATTTGAAAAAGCTG AAATCAATGTCTGGACGTTTGGAAATCGAAACATCAAAACAGATCAATGT ACTGGATAAGAAAGCAAGTGTTTTCATGAAGATCGATTCAAAATTGGGCG ATTATACTCCGAACAGTGATACACAGATCTCCTGCGCCAGTGACAAAACT GTTAAACTTTTAGTTTTAGTACAAACACCTTATAAAGATATCACTAGAAG GATGATTATTCGGGAAGCTTGGAAGCAACAAATGGACCATGATTCGAACC GTTTGAATTGGAAAATGGTATTTGTTGTCAGTTCGCCAGATCAGGGatgg gaagaaaaaaatttctttcgtACTGAGATGAAATTCAAAAGAGATATGCT ACTTGTTGAACGTCCAGAACGCCAAAGCGAGTCTGCTAAGAAGCTTTATT CTGCACTCCGCTGGTCGGCTAATGGATGCAAATTTGAATATTTGTTAATG ACAGATTCTAACACAAAGCTGAATTTCAAAGCTATCTACAACATCATGCA TTCACCAAACATGACTAAAGGAAACCTTGTAATGGGGCACAAACTAACTG AAAAATCATCCATAACTTTTCGTCCAGTCAAAACCTCAATCACCAAAACT GAATTGATTTCAAGATTCTCCAGCACTCAATTCCTAATGTCCAGGGATGT TTTGACCAAAGTCCTCCACCTTTTGAGATGGTATTCTACCCATGGACGTG TCCAGCAACCAATGGCCATGCTAGCTCTGGCAATGAAAGATCGGCTTATA TCTCCACTGGAGTATAAACATTTCTTGACCAAACTGCCTAATGATTGCAA AGTCACAATCGAAAAAACATTGTTGATGCAAACACACAATGACGATTGTT TTAGAAACCCTTTGATGAAGTAGTGTCACCACACCACACTGGCACGCAAT GTTATTTTAATaatcatctaacgttatatggacgttgtgaacattataTA AACGTTTAAAGAGCATAGATTATTTTAAGAATGTGAATATTTTAGTGTAA TTTGTTATTATTTATCCAAATCATGTTGGtattaaatcaaaaaataaggC TTTACAGGAACGCTGTAAGGGCTCCAAACATATTTTCCCGGGTACCTATT AACCAATCCCCCCGGTtgataaatgtttttaaaaaattttccttttactT TTTCAGCTGgtaaacaacgttgtttcaacgttcatttaacgttttatgga cgttgtgaacgttagataaacgttgaaacaacgttgtgtgccagctgggg tagGATCATTTCCCgacttttatataattttaacaATTTCCACACACCCG CTTGTTCCAGACCCCCAGCTCAGGTGCCCACAAACACACCTGTCTCAAAG CCCCGGGGGAACTTTTtctctcagtggggataaaaattcctaataaaatc ccaatgggaatagaaattcctttgttccaaggttaaaagatttagtggga atggttttaaagtccaatttttaaacattaaatttcgaatgggacgaaaa aaaaattaatttccaagtggggccatagtggggctgaaattctaacGTAT TTCTGTCAATCTTTCCAGTGTGGCTGggctcccagcgggtctgtgacaca ggggtcaTCGGCATTTCCTTTGTCGAATGTTGCACAGATTTTCCATGAAA TGGCTTTATTGATTCGAAATGAGGATAcattttcaagccaaaaagGAATA TTTACTTCTTTCACtttgtaatttgattttaatatttttgaataatttta taTGACGAAGAATGTaatgcaatgtttttgtttttaaattgcaattattt ttattttgtaaaaaagaaaaacttaagcATTTGAGAAAATATACAACAAT TAGTGTATGCTAAATGAAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045444XLOC_045444Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073252-exon-scaffold_89-1491911889:147551..150573TCONS_00073252-exon-scaffold_89-1491911889:147551..150573Clytia hemisphaericaexon
TCONS_00073252-exon-scaffold_89-1510915933:147551..150573TCONS_00073252-exon-scaffold_89-1510915933:147551..150573Clytia hemisphaericaexon
TCONS_00073252-exon-scaffold_89-1575043694:147551..150573TCONS_00073252-exon-scaffold_89-1575043694:147551..150573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:147551..150573 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0903816 0.073443 0.117204 0.343043 0.163155 0.918898 1.23988 0.598077 1.02742 0 0.446162 0.658264 0.889794 1.53188 0.534468 0.117261 0.156039 0.0414753 0.183922 0.0556476 0.226428 0.0449028 0.0334707 0.0419806 0.112209 0.143801 0.0327541 0.0961394 0.0718323
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top