TCONS_00073243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073243
Unique NameTCONS_00073243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073243 ID=TCONS_00073243|Name=TCONS_00073243|organism=Clytia hemisphaerica|type=transcript|length=371bp
CTGAGAAAAACGAATACACTCCTGGAATGCATGTAGCAGCTGCATGGCTA
AAGGAGGATAGCACAGAATATACATGGTATTTAGGTCAGTTGTGTTGCAA
CAGGGGCCTCTGGTTGCAATGTAATATTTGTTCATCCTTTTTCCAGTTTA
GTTTAGAACCATGCTAACTGTTCTCTTTTCATTCATAGGATGTGATAGAT
TCAGTTGACAATGATTGcttgaaagtttcttatttcTCAAGAAAGGACAA
AGCTGGCAGCCAATGGACATTCCCAGAGGAAGCAGacattcaaaatacaa
agtATATATCTAAAATATATCTAAATTATAAAAATAGTGGAAAAGGTTGC
TTACCAGTGCACCGTTAGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_88:418951..419321

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073243 ID=TCONS_00073243|Name=TCONS_00073243|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_88:418951..419321 (Clytia hemisphaerica)
ATTCTAACGGTGCACTGGTAAGCAACCTTTTCCACTATTTTTATAATTTA
GATATATTTTAGATATATactttgtattttgaatgtCTGCTTCCTCTGGG
AATGTCCATTGGCTGCCAGCTTTGTCCTTTCTTGAgaaataagaaacttt
caagCAATCATTGTCAACTGAATCTATCACATCCTATGAATGAAAAGAGA
ACAGTTAGCATGGTTCTAAACTAAACTGGAAAAAGGATGAACAAATATTA
CATTGCAACCAGAGGCCCCTGTTGCAACACAACTGACCTAAATACCATGT
ATATTCTGTGCTATCCTCCTTTAGCCATGCAGCTGCTACATGCATTCCAG
GAGTGTATTCGTTTTTCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045438XLOC_045438Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073243-exon-scaffold_88-1491911889:418951..419321TCONS_00073243-exon-scaffold_88-1491911889:418951..419321Clytia hemisphaericaexon
TCONS_00073243-exon-scaffold_88-1510915933:418951..419321TCONS_00073243-exon-scaffold_88-1510915933:418951..419321Clytia hemisphaericaexon
TCONS_00073243-exon-scaffold_88-1575043694:418951..419321TCONS_00073243-exon-scaffold_88-1575043694:418951..419321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:418951..419321 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.820319	0.524404	0	0	1.77199	0.519939	2.47219	2.10842	1.23458	1.37913	1.33125	1.25654	0.674068	0.169109	0.397965	0.667257	0.975381	0.674024	0	0.730826	0.663292	0.619676	0	0.228286	2.75536	0.209847	0.30029	1.1504	0.972285	1.57891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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