TCONS_00073234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073234
Unique NameTCONS_00073234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073234 ID=TCONS_00073234|Name=TCONS_00073234|organism=Clytia hemisphaerica|type=transcript|length=1206bp
GCTGCATTAACCATTACTTACAGTTTCAACAAGGTAAAAACCATTACCTC
AAATCAATCAATGAAAAACCTTTTACAACATTTAAAATTAGCTTGAGCTT
CTTCAACTCGTGAAAAAGTTAAATACTCgtcaaaattaaatactttAAAT
ATAAAGGATTAAACCGATAACTGACCGAAAACTAAACGGTTAAATACATA
TGGGACTTTACAGTTCAGTTACAGAGGTCTCTCTCTCGGAGTCCGTGCGT
GATACAAGATTTCTTGAACAAAGTTTtgttttataatattttactaTAGC
TTTATAATATTTTACTATAGCTTTATCTCTCCAAATGTAAATTAATGCAT
TGAGACCAGAACATGTAAAAATCGGTATATGTACAATAGGTGATAAATCC
AACAATACGGTTAGATACGGGTCATCAATATCATAAAATATCATCGAAAT
ACCCGAAATGACATAATAAAGACTGAGCGGTAAAATACATACGGAATATA
GCATCGAAAGAGCTTTGAAAATGCCAACGGCTGTCTTTTGAttgatgttt
tgtttatttctttgaCCTCCTAGTATATCCTCCCCACTTTCGTTCTTTCG
TGATTGTGCCGTTAAAATCCTATTGGACCAAATATTCAAAACCGAAGCCG
AAACAACCGAAAAAATTATACCGACGCCTAGTGTCAACCAGTGTGTAAAG
TGAAGAGGTACGGAAGCTAATGTGTATGAAAGGTTAGCGTGTATTGATAA
CAAAAGCACCGATATATTCCAGAATATTATGAATgcgtaaattttctttt
ttgttatgATAGCTTTGTGTTCTAAAGGTTTCCGCGTGACATGATTCCTT
ATGTATGAGATCAATAAAAAGATACCAAGGTCCATTCCAAATGTGTAAAC
TGATATTGCATGGCCGATACCGTAAGCAAGACAACTGGTAGATGATGAAT
AGATGAACCAACCAAAATAAAGAAGGCACAGTAATGTCCCAGCATCCATT
ATTGACAAATATATGAACAATTTCTGAGACATTGTCatttttttgttagt
ttttttcaatCCATTAATTAAAGCAGTGTTTGTGAGAGCAGAGAAAACAA
ACATAAGACCACCTCCAAGGAATTTCACATAAAACGTCGCAGACCTTGAC
GATTCCTCGCTCTGAGTACTGTAGTCGGACATATTGGTCATGTTGTTGGC
CATGTG
Run BLAST on NCBI

protein sequence of TCONS_00073234-protein

>TCONS_00073234-protein ID=TCONS_00073234-protein|Name=TCONS_00073234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
HMANNMTNMSDYSTQSEESSRSATFYVKFLGGGLMFVFSALTNTALINGL
KKTNKKMTMSQKLFIYLSIMDAGTLLCLLYFGWFIYSSSTSCLAYGIGHA
ISVYTFGMDLGIFLLISYIRNHVTRKPLEHKAIITKKKIYAFIIFWNISV
LLLSIHANLSYTLASVPLHFTHWLTLGVGIIFSVVSASVLNIWSNRILTA
QSRKNESGEDILGGQRNKQNINQKTAVGIFKALSMLYSVCILPLSLYYVI
SGISMIFYDIDDPYLTVLLDLSPIVHIPIFTCSGLNALIYIWRDKAIVKY
YKAIVKYYKTKLCSRNLVSRTDSERETSVTEL
Run BLAST on NCBI

transcript from alignment at scaffold_88:134538..135743

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073234 ID=TCONS_00073234|Name=TCONS_00073234|organism=Clytia hemisphaerica|type=transcript|length=1206bp|location=Sequence derived from alignment at scaffold_88:134538..135743 (Clytia hemisphaerica)
CACATGGCCAACAACATGACCAATATGTCCGACTACAGTACTCAGAGCGA GGAATCGTCAAGGTCTGCGACGTTTTATGTGAAATTCCTTGGAGGTGGTC TTATGTTTGTTTTCTCTGCTCTCACAAACACTGCTTTAATTAATGGattg aaaaaaactaacaaaaaaatGACAATGTCTCAGAAATTGTTCATATATTT GTCAATAATGGATGCTGGGACATTACTGTGCCTTCTTTATTTTGGTTGGT TCATCTATTCATCATCTACCAGTTGTCTTGCTTACGGTATCGGCCATGCA ATATCAGTTTACACATTTGGAATGGACCTTGGTATCTTTTTATTGATCTC ATACATAAGGAATCATGTCACGCGGAAACCTTTAGAACACAAAGCTATca taacaaaaaagaaaatttacgcATTCATAATATTCTGGAATATATCGGTG CTTTTGTTATCAATACACGCTAACCTTTCATACACATTAGCTTCCGTACC TCTTCACTTTACACACTGGTTGACACTAGGCGTCGGTATAATTTTTTCGG TTGTTTCGGCTTCGGTTTTGAATATTTGGTCCAATAGGATTTTAACGGCA CAATCACGAAAGAACGAAAGTGGGGAGGATATACTAGGAGGtcaaagaaa taaacaaaacatcaaTCAAAAGACAGCCGTTGGCATTTTCAAAGCTCTTT CGATGCTATATTCCGTATGTATTTTACCGCTCAGTCTTTATTATGTCATT TCGGGTATTTCGATGATATTTTATGATATTGATGACCCGTATCTAACCGT ATTGTTGGATTTATCACCTATTGTACATATACCGATTTTTACATGTTCTG GTCTCAATGCATTAATTTACATTTGGAGAGATAAAGCTATAGTAAAATAT TATAAAGCTAtagtaaaatattataaaacaAAACTTTGTTCAAGAAATCT TGTATCACGCACGGACTCCGAGAGAGAGACCTCTGTAACTGAACTGTAAA GTCCCATATGTATTTAACCGTTTAGTTTTCGGTCAGTTATCGGTTTAATC CTTTATATTTaaagtatttaattttgacGAGTATTTAACTTTTTCACGAG TTGAAGAAGCTCAAGCTAATTTTAAATGTTGTAAAAGGTTTTTCATTGAT TGATTTGAGGTAATGGTTTTTACCTTGTTGAAACTGTAAGTAATGGTTAA TGCAGC

Coding sequence (CDS) from alignment at scaffold_88:134538..135743

>TCONS_00073234 ID=TCONS_00073234|Name=TCONS_00073234|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_88:134538..135743 (Clytia hemisphaerica)
CACATGGCCAACAACATGACCAATATGTCCGACTACAGTACTCAGAGCGA
GGAATCGTCAAGGTCTGCGACGTTTTATGTGAAATTCCTTGGAGGTGGTC
TTATGTTTGTTTTCTCTGCTCTCACAAACACTGCTTTAATTAATGGattg
aaaaaaactaacaaaaaaatGACAATGTCTCAGAAATTGTTCATATATTT
GTCAATAATGGATGCTGGGACATTACTGTGCCTTCTTTATTTTGGTTGGT
TCATCTATTCATCATCTACCAGTTGTCTTGCTTACGGTATCGGCCATGCA
ATATCAGTTTACACATTTGGAATGGACCTTGGTATCTTTTTATTGATCTC
ATACATAAGGAATCATGTCACGCGGAAACCTTTAGAACACAAAGCTATca
taacaaaaaagaaaatttacgcATTCATAATATTCTGGAATATATCGGTG
CTTTTGTTATCAATACACGCTAACCTTTCATACACATTAGCTTCCGTACC
TCTTCACTTTACACACTGGTTGACACTAGGCGTCGGTATAATTTTTTCGG
TTGTTTCGGCTTCGGTTTTGAATATTTGGTCCAATAGGATTTTAACGGCA
CAATCACGAAAGAACGAAAGTGGGGAGGATATACTAGGAGGtcaaagaaa
taaacaaaacatcaaTCAAAAGACAGCCGTTGGCATTTTCAAAGCTCTTT
CGATGCTATATTCCGTATGTATTTTACCGCTCAGTCTTTATTATGTCATT
TCGGGTATTTCGATGATATTTTATGATATTGATGACCCGTATCTAACCGT
ATTGTTGGATTTATCACCTATTGTACATATACCGATTTTTACATGTTCTG
GTCTCAATGCATTAATTTACATTTGGAGAGATAAAGCTATAGTAAAATAT
TATAAAGCTAtagtaaaatattataaaacaAAACTTTGTTCAAGAAATCT
TGTATCACGCACGGACTCCGAGAGAGAGACCTCTGTAACTGAACTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045429XLOC_045429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073234-exon-scaffold_88-1491911889:134538..135743TCONS_00073234-exon-scaffold_88-1491911889:134538..135743Clytia hemisphaericaexon
TCONS_00073234-exon-scaffold_88-1510915933:134538..135743TCONS_00073234-exon-scaffold_88-1510915933:134538..135743Clytia hemisphaericaexon
TCONS_00073234-exon-scaffold_88-1575043694:134538..135743TCONS_00073234-exon-scaffold_88-1575043694:134538..135743Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073234-proteinTCONS_00073234-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:134538..135743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177922 0.312304 0.322325 0.118254 0 0 0.0457495 0 0 0 0 0 0.0236661 0.049155 0.969891 0.455368 0.186992 0.465462 2.15615 2.33542 0.378456 0.402759 0.408005 0.482216 0.114616 0.238682 0.0487934 0.156221 0.039496 0.0804804
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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