TCONS_00073210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073210
Unique NameTCONS_00073210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073210 ID=TCONS_00073210|Name=TCONS_00073210|organism=Clytia hemisphaerica|type=transcript|length=1256bp
TTAAAGACCTAGATAATAGTAAAAACTCAATCATAACAAACAAACATGGT
CAAGATTGTTGTTATACTGTTTGCATTATTGTATTCTCATTGCATATGGG
CTGCTGATGGAGATGATCAGGAAACTGTGGATCGGATACCAGCTAACAAT
GATCACTTGCCACCCAATGTAGATCCATCATCAAGGATTTCATTTGAATC
ACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTT
TTAAATGTGACGCATGTACAGCTATTGCTTTTcagATGGACAAACAGCTA
ACTCAtgcagaaaaaagtgacaagCCGATGAAAGAATCTGAATATCTGGA
TGTCTTTGACAAAGTCTGTGGACATGAAACCTATAAGAGTTACGGATTGA
AATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCTGGAAGCGAAT
GAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTACAAGACTATC
ATCGAAATGTTTCGAGTTGATCGGTGAACACGGTGAAGACGAGATTTATG
ACGCCTTTCGAAGTACTGATGATTTCCATACGTTTCTTTGCAAAGAACTC
ACTACTGACtgcaagaaaatgaagaagaagaataagaaaaagaagaaggg
aAAGAAGAGTGAATTGTAAGATTTTTAGaagttttgtttttccttttgtt
tttattattctaATATTATTATTCGGTTTTTCTTATAtttgttattactt
ttttttctattagtCTATTAATTTATTAGTTAGttttgacgctctctaat
tcgccGTCGTGACAACAGGATTCTTCCAAACCTTTTTCTACTTTTTGATA
AGCTGATTCGATGAAAATATTCCCAttgaaattcgaattacagagcgtca
actgtatttttagtgtttttttatgttcTTAGGGGTAGGGAAACAATGTT
TTCTCGCAAAGTACACTGTCTACTAGTTTGCTCTAATGAAGTCCCTCGTG
CTGAGAATTAGGCTACGTCATACCTTTCTTCGTTTCGAATGTAAATCTCA
TACTTTTCGTAATGTCTAAAAGCTTGATTGTATATCAGCTCCTAGTTGgt
tcagggggggggtcaacatttataataccaacccatagcccaaaaaactg
acttttgaccttttcagctaagttaacaccaccaccccaaaattggtatc
gataccaacttgaaaatcataattttcagaaaaaggggggacccaccccc
ttattt
Run BLAST on NCBI

protein sequence of TCONS_00073210-protein

>TCONS_00073210-protein ID=TCONS_00073210-protein|Name=TCONS_00073210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MVKIVVILFALLYSHCIWAADGDDQETVDRIPANNDHLPPNVDPSSRISF
ESPKMSDEEQFSAHLPDSFKCDACTAIAFQMDKQLTHAEKSDKPMKESEY
LDVFDKVCGHETYKSYGLKSLNGVNRISGEGLEANEHPGMMYGGGKWPTR
LSSKCFELIGEHGEDEIYDAFRSTDDFHTFLCKELTTDCKKMKKKNKKKK
KGKKSEL
Run BLAST on NCBI

transcript from alignment at scaffold_88:16036..19460-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073210 ID=TCONS_00073210|Name=TCONS_00073210|organism=Clytia hemisphaerica|type=transcript|length=3425bp|location=Sequence derived from alignment at scaffold_88:16036..19460- (Clytia hemisphaerica)
TTAAAGACCTAGATAATAGTAAAAACTCAATCATAACAAACAAACATGGT CAAGATTGTTGTTATACTGTTTGCATTATTGTATTCTCATTGCATATGGG CTGCTGATGGAGATGATCAGGAAACTGTGGATCGGATACCAGCTAACAAT GATCACTTGCCACCCAATGTAGATCCATCATCAAGGATTTCATTTGAATC ACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTT TTAAATGTGACGCATGTACAGCTATTGCTTTTCAGGTGATTTTTTTTTTA AATCTTGTGATACAATTTTGTATTGGATTGGTTTCATTTTTTATGATTTT GCTTCAGAACTTTTCCATCCGCTTTCCGCTTCTAAAAAACTGATGAATGC ATGCACGCATATATTTTAATCATTACATACTCTCGGGTACTTAATAGCCC CGTCTCCCCGCTAATTAATTTTTCCACCCAGGACATTCTTATTCCAACCC CCCTGCTTATTAATTTTTGGGAAAATATTTTTGAAAGTTCCCTCTTTTGT CCTAATTCAGCTGTAACAGCCTCCTTTTCAAAAATTTTCCACCAAGGACA TTTCTATTTGAACCCCCCTCACTTATTAAGTTTTGAGATTTTTTCCAACC CCGTCGCTTATTCGAATCCCCCCGGCTATTAGGTACCCAAGAGTAAATGG AAGTGAGTCTTGTGATTCTAAAAAGAAATTTAGATTTGAGCGTATTCTTA AAAGAGGAGCGTTTTTTTTAAATTGATGGCCAAAGCAGTCTAAAATTTAA AACATTTCTGAGGCTCAACATGATTCTAAAAATATCCTAAAATTTTACAA ATTTGAACAGATTTTGACTTCTGACTTTCAGAATTAGAAGAACTATAATT TTTTTACATTTTAGCATGGAATTCTGCTTTAAAAAAAGGGTAGTAATATT TAAATATATTTGTTCTTTAATAAATCACCTTAATGAAGAGAGGGGTTGTA TTGTATTTTCAGCATGTTAAACCACAGATATATAAAACACTAGATAGAGC TACTCTGTATTTTCCAAGCAATGGCAGGTGAAGCAAAATAATCCGCCATC TTTGCTGAAAGTAGACCACAGTAGAAACCTTGGTTTTTGACACTCAAATG ACTTCAAAATTTGAAGCACCACATAGGCTAAATTGTGACGTCACTTCGTT CAAGATGGCGAATTACTTTGCTTCAATTAGTATCTAGTGATTTATTTAAG ATATTTGTGATTTCAACTCAATCAAACATTAATTTTTAGATGGACAAACA GCTAACTCATGCAGAAAAAAGTGACAAGCCGATGAAAGAATCTGAATATC TGGATGTCTTTGACAAAGTCTGTGGACATGAAACCTATAAGAGGTAAATC TTTAATATTGTATGGTGGCTACTTCGAGATGATAAAAAATCTTTACAACT AGAATATGCAATATTGCAAAATTATTTAGAATTTAGGAATGGAAACCTTT TCTTTTACTAAAATTCTGGTGCTCGGAATTATCTTAACAAAGTATGATTG ATTGATACTTTTAAATCATTCGTTAGGGTGAAAAAGGCTTGTAAATCGTA GCTTTAGATCCTAAATGGTAGTTAAAGGGATAATCAGATGGTTTGTGATA TTTGGCTTGTGTAATCTTTCTACTGTCCTGAGCAAAACCTCAAAATGTTT TTACCTAAATATTTTCCAAAGTCGAGATATTTTAGATTACAAGTTTTTGA CTTTTTGTAAGAAAACAATAGAATTTCAACGTAAGAACTGTTTGAGAACC CATTTTCGGAAATTTCAAATTGTGATATCTCGACTTTAGAATATAGTTAC CCAAACATACTTGGCGATTTTACTCAAAACCACAGAGGGTTTCTTCGAGC AAAAAAAATCTCAAACCATCTGATTATCCCTTTAACACTTATTGAATGTA CTTATAAAGGTTTTTTTATTTATATTTTTCTCCTAGAAAATATATTTTCT CCTAGATCTCATTCCACTGATGATTGGTGCCTGAGCTCCATGAAACTCTG AGTTTGAAACATAGATATTGTGTCAACTCTTCATTATAAATTATTCATTT ATTGAATGGACTTACAACGGATTTTTTTATTCATTTTTTTCTGCTAGTTA CGGATTGAAATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCTGG AAGCGAATGAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTACA AGGTAAATCTATGTTTGACAGGCAATTTTCAATAAGAACAACAGGCTGAA ATTCGGCAAAACTTATCAAACATCTAAGAACAATTTGACTCCCGAAGTTC AAATTATTACTAAATAATTAAATACTGATTTTAAATATTTTAACCTGAGA ATTTCAAAAAAAAAGAAGAAAAATCGAGGCAAAACTAAAATCTTACCTTT CTTAATTGTTGTCATATACTTCACAATTCTTAAGCTTTGATAAAGAACGA GACAGACATAAAAGTTCTGATTTGAAGGAAGAAAGTTTGTTGAAAATGGT AATGAATTTTTGGGTCGGTAGGTTTTTAGGTAGGTAGTCTAGCCTAAGAA TAAAAAAGGTTAAAAAACAAAAATGCACTCGAAATTTTATGTTTTTGTTT CATTTCTTTGCAGACTATCATCGAAATGTTTCGAGTTGATCGGTGAACAC GGTGAAGACGAGATTTATGACGCCTTTCGAAGTACTGATGATTTCCATAC GTTTCTTTGCAAAGAACTCACTACTGACTGCAAGAAAATGAAGAAGAAGA ATAAGAAAAAGAAGAAGGGAAAGAAGAGTGAATTGTAAGATTTTTAGAAG TTTTGTTTTTCCTTTTGTTTTTATTATTCTAATATTATTATTCGGTTTTT CTTATATTTGTTATTACTTTTTTTTCTATTAGTCTATTAATTTATTAGTT AGTTTTGACGCTCTCTAATTCGCCGTCGTGACAACAGGATTCTTCCAAAC CTTTTTCTACTTTTTGATAAGCTGATTCGATGAAAATATTCCCATTGAAA TTCGAATTACAGAGCGTCAACTGTATTTTTAGTGTTTTTTTATGTTCTTA GGGGTAGGGAAACAATGTTTTCTCGCAAAGTACACTGTCTACTAGTTTGC TCTAATGAAGTCCCTCGTGCTGAGAATTAGGCTACGTCATACCTTTCTTC GTTTCGAATGTAAATCTCATACTTTTCGTAATGTCTAAAAGCTTGATTGT ATATCAGCTCCTAGTTGGTTCAGGGGGGGGGTCAACATTTATAATACCAA CCCATAGCCCAAAAAACTGACTTTTGACCTTTTCAGCTAAGTTAACACCA CCACCCCAAAATTGGTATCGATACCAACTTGAAAATCATAATTTTCAGAA AAAGGGGGGACCCACCCCCTTATTT

Coding sequence (CDS) from alignment at scaffold_88:16036..19460-

>TCONS_00073210 ID=TCONS_00073210|Name=TCONS_00073210|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_88:16036..19460- (Clytia hemisphaerica)
ACTATCATCGAAATGTTTCGAGTTGATCGGTGAACACGGTGAAGACGAGA
TTTATGACGCCTTTCGAAGTACTGATGATTTCCATACGTTTCTTTGCAAA
GAACTCACTACTGACTGCAAGAAAATGAAGAAGAAGAATAAGAAAAAGAA
GAAGGGAAAGAAGAGTGAATTGTAATTACGGATTGAAATCATTGAACGGT
GTCAATCGAATCTCAGGAGAAGGTCTGGAAGCGAATGAACATCCAGGAAT
GATGTATGGTGGTGGCAAATGGCCTACAAGATGGACAAACAGCTAACTCA
TGCAGAAAAAAGTGACAAGCCGATGAAAGAATCTGAATATCTGGATGTCT
TTGACAAAGTCTGTGGACATGAAACCTATAAGAGATGGTCAAGATTGTTG
TTATACTGTTTGCATTATTGTATTCTCATTGCATATGGGCTGCTGATGGA
GATGATCAGGAAACTGTGGATCGGATACCAGCTAACAATGATCACTTGCC
ACCCAATGTAGATCCATCATCAAGGATTTCATTTGAATCACCAAAGATGT
CAGATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTTTTAAATGTGAC
GCATGTACAGCTATTGCTTTTCAGACTATCATCGAAATGTTTCGAGTTGA
TCGGTGAACACGGTGAAGACGAGATTTATGACGCCTTTCGAAGTACTGAT
GATTTCCATACGTTTCTTTGCAAAGAACTCACTACTGACTGCAAGAAAAT
GAAGAAGAAGAATAAGAAAAAGAAGAAGGGAAAGAAGAGTGAATTGTAAT
TACGGATTGAAATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCT
GGAAGCGAATGAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTA
CAAGATGGACAAACAGCTAACTCATGCAGAAAAAAGTGACAAGCCGATGA
AAGAATCTGAATATCTGGATGTCTTTGACAAAGTCTGTGGACATGAAACC
TATAAGAGATGGTCAAGATTGTTGTTATACTGTTTGCATTATTGTATTCT
CATTGCATATGGGCTGCTGATGGAGATGATCAGGAAACTGTGGATCGGAT
ACCAGCTAACAATGATCACTTGCCACCCAATGTAGATCCATCATCAAGGA
TTTCATTTGAATCACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACAC
TTGCCAGACTCTTTTAAATGTGACGCATGTACAGCTATTGCTTTTCAGAC
TATCATCGAAATGTTTCGAGTTGATCGGTGAACACGGTGAAGACGAGATT
TATGACGCCTTTCGAAGTACTGATGATTTCCATACGTTTCTTTGCAAAGA
ACTCACTACTGACTGCAAGAAAATGAAGAAGAAGAATAAGAAAAAGAAGA
AGGGAAAGAAGAGTGAATTGTAATTACGGATTGAAATCATTGAACGGTGT
CAATCGAATCTCAGGAGAAGGTCTGGAAGCGAATGAACATCCAGGAATGA
TGTATGGTGGTGGCAAATGGCCTACAAGATGGACAAACAGCTAACTCATG
CAGAAAAAAGTGACAAGCCGATGAAAGAATCTGAATATCTGGATGTCTTT
GACAAAGTCTGTGGACATGAAACCTATAAGAGATGGTCAAGATTGTTGTT
ATACTGTTTGCATTATTGTATTCTCATTGCATATGGGCTGCTGATGGAGA
TGATCAGGAAACTGTGGATCGGATACCAGCTAACAATGATCACTTGCCAC
CCAATGTAGATCCATCATCAAGGATTTCATTTGAATCACCAAAGATGTCA
GATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTTTTAAATGTGACGC
ATGTACAGCTATTGCTTTTCAGACTATCATCGAAATGTTTCGAGTTGATC
GGTGAACACGGTGAAGACGAGATTTATGACGCCTTTCGAAGTACTGATGA
TTTCCATACGTTTCTTTGCAAAGAACTCACTACTGACTGCAAGAAAATGA
AGAAGAAGAATAAGAAAAAGAAGAAGGGAAAGAAGAGTGAATTGTAATTA
CGGATTGAAATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCTGG
AAGCGAATGAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTACA
AGATGGACAAACAGCTAACTCATGCAGAAAAAAGTGACAAGCCGATGAAA
GAATCTGAATATCTGGATGTCTTTGACAAAGTCTGTGGACATGAAACCTA
TAAGAGATGGTCAAGATTGTTGTTATACTGTTTGCATTATTGTATTCTCA
TTGCATATGGGCTGCTGATGGAGATGATCAGGAAACTGTGGATCGGATAC
CAGCTAACAATGATCACTTGCCACCCAATGTAGATCCATCATCAAGGATT
TCATTTGAATCACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACACTT
GCCAGACTCTTTTAAATGTGACGCATGTACAGCTATTGCTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045413XLOC_045413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073210-exon-scaffold_88-1575043694:19176..19460TCONS_00073210-exon-scaffold_88-1575043694:19176..19460Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1575043694:18068..18171TCONS_00073210-exon-scaffold_88-1575043694:18068..18171Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1575043694:17209..17313TCONS_00073210-exon-scaffold_88-1575043694:17209..17313Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1575043694:16036..16797TCONS_00073210-exon-scaffold_88-1575043694:16036..16797Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1510915933:19176..19460TCONS_00073210-exon-scaffold_88-1510915933:19176..19460Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1510915933:18068..18171TCONS_00073210-exon-scaffold_88-1510915933:18068..18171Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1510915933:17209..17313TCONS_00073210-exon-scaffold_88-1510915933:17209..17313Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1510915933:16036..16797TCONS_00073210-exon-scaffold_88-1510915933:16036..16797Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1491911889:19176..19460TCONS_00073210-exon-scaffold_88-1491911889:19176..19460Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1491911889:18068..18171TCONS_00073210-exon-scaffold_88-1491911889:18068..18171Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1491911889:17209..17313TCONS_00073210-exon-scaffold_88-1491911889:17209..17313Clytia hemisphaericaexon
TCONS_00073210-exon-scaffold_88-1491911889:16036..16797TCONS_00073210-exon-scaffold_88-1491911889:16036..16797Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073210-proteinTCONS_00073210-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:16036..19460 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.33272 6.88263 28.9249 31.9431 24.3335 17.7368 30.4762 30.561 25.3991 31.7135 20.6631 14.2249 17.2408 15.4867 14.1099 14.3812 27.152 24.3354 7.21723 11.7433 18.297 18.4065 10.2833 12.9877 26.5251 26.1776 24.6299 13.5976 10.1551 11.976
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021852DUF3456
Blast
BLAST of TCONS_00073210 vs. Swiss-Prot (Human)
Match: MZB1 (Marginal zone B- and B1-cell-specific protein OS=Homo sapiens GN=MZB1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.614e-27
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  157 LPPNVDPSSRISFESPKMSDEEQFSAHLPDSFKCDACTAIAFQMDKQLTHAEK--------SDKPMKESEYLDVFDKVCGHETYKSYGLKSLNGVNRISGEGLEANEHPGM--MYGGGKWPTRLSSKCFELIGEHGEDEIYDAF-RSTDDFHTFLC 591
            +P  +   + ++  +P++ DEE +SAH+P   +CDAC A+A+QM + L  AE           + + E  Y DV D+ C    ++ YG++ ++ V R++G GL     P +  M  GG WPTRLS  C   +GE GED+IY+A  +        LC
Sbjct:   17 IPGGLGDRAPLTATAPQLDDEEMYSAHMPAHLRCDACRAVAYQMWQNLAKAETKLHTSNSGGRRELSELVYTDVLDRSC-SRNWQDYGVREVDQVKRLTGPGLSEGPEPSISVMVTGGPWPTRLSRTCLHYLGEFGEDQIYEAHQQGRGALEALLC 171          
The following BLAST results are available for this feature:
BLAST of TCONS_00073210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MZB11.614e-2734.62Marginal zone B- and B1-cell-specific protein OS=H... [more]
back to top