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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073202 ID=TCONS_00073202|Name=TCONS_00073202|organism=Clytia hemisphaerica|type=transcript|length=1319bp
ATATGAACCCTGAGATCCGCAACGAGGTGGAgttgaaaaaacaacgaagg
GAAGAACAACGGATTGACGAACTGAAGAAAGCAGGAAAGAGTAAAGAAGA
AATCGAAGAAGCATTAAGCAAATACAAAggaaaagagaaagagaagaaag
aagTCATTGTTTGTCATACCGTTCAAGATGAACAGAAACGGAAATTGGAC
AGATTGATGAGTAACCCGGAAGAGCTAGATGAAGAATTTCAAGCGAAAAT
GGAGGCGAATAAAGAAAAGGCCGAAGATTCAACGAACAAAAAGCGAGCTA
AAAGGCAAcgaagaaaacagaaaaaggcAATGGCAAAGAAATCTAAGAAA
TCTGAAGATCAACAAGAGAAAGAACAAGAGGATAGCGACGAAGAAAAAAG
CGATCAAGAAAGtgaaggagaagaagaaaacaACAAAGAACCAGAAGAAC
CTCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGATACGTTTT
CGCTATCCCNgaagaagaagaagaaaacaacAAAGAACCAGAAGAACCTC
ATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGATACGTTTTCGC
TATCCCATACTCTCTGAATGGCATTTGCTTAGACGTTAAAAAGAAAGCTA
AGGTTGTCCTTTTTGCTGTTGTTTCATTTCCTATGTTTGTTGGTTGGCTT
GTTAGGTGGTCActgaaaatatacaaaaacgAGAAGTTTCGTAAGGCCAT
ATTTCGAGTTCTTTTACAACAACTACTCGGCATCCAATTAGGTAGTGATG
AACGAAACTTatggttgttgttgttattaaaGGAACCGAGAAAGTCTATT
TTTCCCTTCTGCTGCGAAACTAGATTCACTCTCAATATGATGGTGGTGAT
GGTATATTACTCCTCGAAGTTAGTGAAGTATAAAGGTTTCACATAGATCA
GAGCAAATTCTGCATTACCGGAACTGAAAAGACGACATTTGGGAACTCGA
AAATGTAATGCTAAACGTAATATAACGGATAGGAGTGAATCAATCTCTTT
TGATACTGGAAAACTGTTTGGATAAAAACAACATTGAATATTACGAACTT
CGTCAACGTATGTTGACTCTTAAACAATGAAAGTTGTCCTTGTAAATAgt
tattttttagtatttattATTCCACGTCCATTTAAATTTTCCAGTAGATT
AACTGACCAAGTTTTccagaaagtaaaaaatataaccCAAtgatttacac
gcttttttataagaacacaaggctgaaAAGTAGCCAAAACCTATGAACAA
Atcaagaacaatctgagcc Run BLAST on NCBI transcript from alignment at scaffold_88:177174..181899+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073202 ID=TCONS_00073202|Name=TCONS_00073202|organism=Clytia hemisphaerica|type=transcript|length=4726bp|location=Sequence derived from alignment at scaffold_88:177174..181899+ (Clytia hemisphaerica)
ATATGAACCCTGAGATCCGCAACGAGGTGGAgttgaaaaaacaacgaagg
GAAGAACAACGGATTGACGAACTGAAGAAAGCAGGAAAGAGTAAAGAAGA
AATCGAAGAAGCATTAAGCAAATACAAAggaaaagagaaagagaagaaag
aagTCATTGTTTGTCATACCGTTCAAGATGAACAGAAACGGAAATTGGAC
AGATTGATGAGTAACCCGGTAAGTACAGTGTGTCCTAAACCAGCGGATAA
ATTTTTATGTACAGTAAAATCGTCCTTATTTATGAAAACTTTTATGACTT
CTATACGCCTGTTTAGCAtgtattaccgagtttatgtatcagaggatatc
gagggcgacggtaagtgaaatgatacaaaacaaagtcgataatTGATaca
cggctctatatcgcctgtGCTCACCTAAATagacgacggtatcttggtgt
ttttaccgtcgtcgagcaaagtggacggtgattttggagacatgtcaact
ttgctttataccgtccccctagatttatctcgaatacataaactcgctat
agACTCTGTTGAGGAGCAATCTCTACTTCTCCGTTCACTGCAAGAACACT
CTCTGGTGACAACAACAGTCTATGCTCACTTACCCAAGCCGCGCTGATTA
GTTCTGGGAAGgacgaaacacgtgtctgcggatagatGACTTGTCTACTT
GATATTTTAATCTCAAAAgcctattcaatcatcttgagAATTGAATATAt
attgattgaacagagaattGCAATTTTATTTACATCAAATTTGTAAAGCA
TCTGTTAGTCTATTATAAAAGTTTTACACTTACAAATATATCTAGGCTGA
AAAAATGAAACCAAATCAAAACATCGTCAAAGCATTTGTCCACTCTCTGA
AATTTCAAGAGAtttcatgacgtcataagtTAAAAATTTTATCCCAAATA
AGTGAATTCCCAAATAACTTTGACTTGCACAATTATTATATAACCTCTAT
GCTCACAATAGTTAGAAGATTTGAAAGCGCTAAGCGCTAAACGTTTTgaa
tcaatgataattttttttcaatttacagAATAAAGAAGTTTACATTCCTC
AGCAACGCAAAGAATGGAAACCTCGCGACCCGGCCGAGTTTGTGCGCCAT
GTTATGGGGTCTAGTGCTGGGGCTGGGAGTGGCGAATTTCACGTGTATCG
AAACATAAGGAAGCGGGAATTAAAACGTCAAGAATACATGGAAAAGAAAA
CTATGAAGGTATGTTGAAAGGGGAGTACCGGCCTTCAATGCCAATGGGAA
CATTCCATTGAAGTTGAcagtatatttttttttcacaaattaaattgACC
CTGTGagacaaaatttattggcaTTGCAACCATGTCCAGTTATCGAATAT
TTCCGGACTTTCACACCTCGTATTGCCAGAGCGACTCCTTGTTGAGTAAA
GGGCGATGAACTTTTTTCGTATTTTCCCGGACTGTCTCTTTTAAAAAAGA
GGTCTAAAATCCTCACATTTTAATATAAAATATGCTTTTTTATTTAGGAA
GAGCTAGATGAAGAATTTCAAGCGAAAATGGAGGCGAATAAAGAAAAGGC
CGAAGATTCAACGAACAAAAAGCGAGCTAAAAGGTAACTACTCTATCTCT
TCCCAACGCTTCTTATTTTATGAGAATCTTACCCTTTTCATCTGGCTCTT
GATAtacatgacgtaatcttttatacggaaacaccggAAAAACACTgggc
gtttgccaccagttttgaatttaaacaatgaaactggtggcaaacgcccg
gtcttttcgtgtgtttccgtataaaagattacgtcatgaatatcaagaat
tcaACGCGACGTAAGTCAAATAGACCTAACGATATTCCCAAGtaaattaa
attatttaaaggaattttgagctgtgacatcgcattttatttttatttta
acaaaaaagagCAAAGTCGAATTCAAATGAATTTACAATGGAATATTTTA
GCCTGAAAATAGATGAAAGATGAAAATAGATCTTATTCATTTTGTTTTCC
TTCTTCAGGCAAcgaagaaaacagaaaaaggcAATGGCAAAGAAATCTAA
GAAATCTGAAGGTATGAGTGGAAAATATATATCTGGATATTGTTTGATTT
TTGGCTGAAAGCTGATAATTCTTAAGGTGTAAAATTAGCAATTAGAGCGC
CTTTCAATGTTCACCAAAAACCAAACTTTTCGTTGTACCCTTTCTATATA
ATAGCAATCCCCCATATTGGTCAGCCCCCTTAAAAACGGGCCTACTCTGC
ACGGAGTTGCCCGTCGTTCGTCGTTAAGAAAATTCAagtcgcaagctcgg
tcgttgcTTGACCACGGGCAATACTTCTAAGTGCAGCCCTCGCAAaacgg
tcattattgtattagagtAGGGGTAGCGCAATCATCACAATTTAGCAGTG
AACTGTTAAACTAAGGATGGTTTGTcactactctgtaccagagtgtatct
cacgtttatcgcttcgtacagcttcgtagtacactttgtgcgcattgtct
gtttgataaaaaaattcccgtacggagacctctgcgatgaagtatgattt
ataaatagcaacacttctctcatcgtctcccctctctcaccaacactcca
tcgcagcggtcggttcgaaaaatctcaaatgagaaaagacaatgacaaca
gaccctctacggcaatgaattttgaaattagccgtaaatgctgggtctgt
gtacaggcAAGTTTGTCACGTGATCGTGGTAAAATGATATGAATTATGAA
TCTTACGGTTCGTAAATCTACATTTTCATTTTGGTGgagtcccagctggc
acacaacgttgtgaacattagataaacgttgaaacaacgttgtgtgccag
ctggagtCGTTGCAAAAGCGTGAGGGTTTGGTTGAAAAGGTTTTGACTAT
CGTTTATAAAGCAGCCTTACCATTATTAAGCTCATGAAAAATAAGTTGGT
GGGATAAAAACATATAATAATTCGAATTTCGCAAAGTCAGTAAAAACATG
AAGTAAATTAGAGGGGCGCGAAAATTAAGGGAACTTAGGGTACACGCTTC
CCCATTtcaacatgaatatttttcacttttttaagaaaactcatCTTTAG
ATATTCTTAAGGCATCCAAGCTAACATACTTCAACAAAAGTATGGCATTT
TTCTGGAAGTCTTGGAGATAATTGACAATTTACGCGCAAAAAAAGGTCCC
AAAAGGGCCAATTTTAGGTTCAGGATTTTTTAATGGtgatattctttatt
ttttttggccaATATCATCATATTCTTCTATTCCATAGAGTacattctca
taaaaaagcactaaggcgaaaataaacaaatgtactgcttccggaaaccg
gccgggtgataAAAAGATTGTTCTGAtccggccgcagactatggtttcat
ctatatggttcatcataaagattTTCTTGTTGACCGTGGACTGTTGAAGC
TATCAAAtgtcgtttggttagatattcccgcttgtaaatcaagttttgtt
tgttAGTAGTTgctacattagtattcagggcttacttcatatgtttgtac
ataaaagttatctttaaagtttttcaatttcaatgatcttaagttatcaa
aaatagcaacaacaaaaaattatttttccagcCGGCTACatgagtttttt
ttcttcactggaaacactacatttttttattttcacctaattttgttttt
ctttatataaGCAGATCAACAAGAGAAAGAACAAGAGGATAGCGACGAAG
AAAAAAGCGATCAAGAAAGtgaaggagaagaagaaaacaACAAAGAACCA
GAAGAACCTCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGAT
ACGTTTTCGCTATCCCNgaagaagaagaagaaaacaacAAAGAACCAGAA
GAACCTCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGATACG
TTTTCGCTATCCCATACTCTCTGAATGGCATTTGCTTAGACGTTAAAAAG
AAAGCTAAGGTTGTCCTTTTTGCTGTTGTTTCATTTCCTATGTTTGTTGG
TTGGCTTGTTAGGTGGTCActgaaaatatacaaaaacgAGAAGTTTCGTA
AGGCCATATTTCGAGTTCTTTTACAACAACTACTCGGCATCCAATTAGGT
AGTGATGAACGAAACTTatggttgttgttgttattaaaGGAACCGAGAAA
GTCTATTTTTCCCTTCTGCTGCGAAACTAGATTCACTCTCAATATGATGG
TGGTGATGGTATATTACTCCTCGAAGTTAGTGAAGTATAAAGGTTTCACA
TAGATCAGAGCAAATTCTGCATTACCGGAACTGAAAAGACGACATTTGGG
AACTCGAAAATGTAATGCTAAACGTAATATAACGGATAGGAGTGAATCAA
TCTCTTTTGATACTGGAAAACTGTTTGGATAAAAACAACATTGAATATTA
CGAACTTCGTCAACGTATGTTGACTCTTAAACAATGAAAGTTGTCCTTGT
AAATAgttattttttagtatttattATTCCACGTCCATTTAAATTTTCCA
GTAGATTAACTGACCAAGTTTTccagaaagtaaaaaatataaccCAAtga
tttacacgcttttttataagaacacaaggctgaaAAGTAGCCAAAACCTA
TGAACAAAtcaagaacaatctgagcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073202-exon-scaffold_88-1491911889:177174..177391 | TCONS_00073202-exon-scaffold_88-1491911889:177174..177391 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1510915933:177174..177391 | TCONS_00073202-exon-scaffold_88-1510915933:177174..177391 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1575043694:177174..177391 | TCONS_00073202-exon-scaffold_88-1575043694:177174..177391 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1491911889:178721..178806 | TCONS_00073202-exon-scaffold_88-1491911889:178721..178806 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1510915933:178721..178806 | TCONS_00073202-exon-scaffold_88-1510915933:178721..178806 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1575043694:178721..178806 | TCONS_00073202-exon-scaffold_88-1575043694:178721..178806 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1491911889:179232..179284 | TCONS_00073202-exon-scaffold_88-1491911889:179232..179284 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1510915933:179232..179284 | TCONS_00073202-exon-scaffold_88-1510915933:179232..179284 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1575043694:179232..179284 | TCONS_00073202-exon-scaffold_88-1575043694:179232..179284 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1491911889:180938..181899 | TCONS_00073202-exon-scaffold_88-1491911889:180938..181899 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1510915933:180938..181899 | TCONS_00073202-exon-scaffold_88-1510915933:180938..181899 | Clytia hemisphaerica | exon |
| TCONS_00073202-exon-scaffold_88-1575043694:180938..181899 | TCONS_00073202-exon-scaffold_88-1575043694:180938..181899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:177174..181899 + |
Blast
The following BLAST results are available for this feature:
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