TCONS_00073190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073190
Unique NameTCONS_00073190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073190 ID=TCONS_00073190|Name=TCONS_00073190|organism=Clytia hemisphaerica|type=transcript|length=359bp
CCAGAAATATCTAGACTCTTTAATTAAAGACATAAAGAGCACTCTGTCCA
AATTCAAATCCAATCCTCATTGGATAGGGGGAGATCTGAACTTACCAGAC
ATTGATTGGTCTACTAATAGTATCACAAGCTCTcaataccctaaatcact
aaatgaATCGTTCTTGGATATGCTAGGAGATAGCAACTTAGAACAACTTG
TCGACTTTCCGACCCGTAGAAATAACACCCTTGAACTTCTACTAACGAAC
AATCCATCTTTCATTCAAACTATCAGTGACATACCTGGAATCAGCGATCA
CGACCGGATTGTAATTGCTGATATTATATGCCACCCTCGTCGTAGTAGAC
CTGTCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00073190-protein

>TCONS_00073190-protein ID=TCONS_00073190-protein|Name=TCONS_00073190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
QKYLDSLIKDIKSTLSKFKSNPHWIGGDLNLPDIDWSTNSITSSQYPKSL
NESFLDMLGDSNLEQLVDFPTRRNNTLELLLTNNPSFIQTISDIPGISDH
DRIVIADIICHPRRSRPVK
Run BLAST on NCBI

transcript from alignment at scaffold_87:163988..164346

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073190 ID=TCONS_00073190|Name=TCONS_00073190|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at scaffold_87:163988..164346 (Clytia hemisphaerica)
TTTTGACAGGTCTACTACGACGAGGGTGGCATATAATATCAGCAATTACA
ATCCGGTCGTGATCGCTGATTCCAGGTATGTCACTGATAGTTTGAATGAA
AGATGGATTGTTCGTTAGTAGAAGTTCAAGGGTGTTATTTCTACGGGTCG
GAAAGTCGACAAGTTGTTCTAAGTTGCTATCTCCTAGCATATCCAAGAAC
GATtcatttagtgatttagggtattgAGAGCTTGTGATACTATTAGTAGA
CCAATCAATGTCTGGTAAGTTCAGATCTCCCCCTATCCAATGAGGATTGG
ATTTGAATTTGGACAGAGTGCTCTTTATGTCTTTAATTAAAGAGTCTAGA
TATTTCTGG

Coding sequence (CDS) from alignment at scaffold_87:163988..164346

>TCONS_00073190 ID=TCONS_00073190|Name=TCONS_00073190|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_87:163988..164346 (Clytia hemisphaerica)
TTTGACAGGTCTACTACGACGAGGGTGGCATATAATATCAGCAATTACAA
TCCGGTCGTGATCGCTGATTCCAGGTATGTCACTGATAGTTTGAATGAAA
GATGGATTGTTCGTTAGTAGAAGTTCAAGGGTGTTATTTCTACGGGTCGG
AAAGTCGACAAGTTGTTCTAAGTTGCTATCTCCTAGCATATCCAAGAACG
ATtcatttagtgatttagggtattgAGAGCTTGTGATACTATTAGTAGAC
CAATCAATGTCTGGTAAGTTCAGATCTCCCCCTATCCAATGAGGATTGGA
TTTGAATTTGGACAGAGTGCTCTTTATGTCTTTAATTAAAGAGTCTAGAT
ATTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045402XLOC_045402Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073190-proteinTCONS_00073190-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073190-exon-scaffold_87-1491911889:163988..164346TCONS_00073190-exon-scaffold_87-1491911889:163988..164346Clytia hemisphaericaexon
TCONS_00073190-exon-scaffold_87-1510915933:163988..164346TCONS_00073190-exon-scaffold_87-1510915933:163988..164346Clytia hemisphaericaexon
TCONS_00073190-exon-scaffold_87-1575043694:163988..164346TCONS_00073190-exon-scaffold_87-1575043694:163988..164346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:163988..164346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65563	2.90548	1.87459	1.83399	0.956874	0	0	0.569355	0.597928	0.246877	0.665645	1.10264	0.943805	0.816792	0.603889	1.54822	3.01841	0.436392	0	0.263097	1.60075	1.3385	1.35594	0.493097	0.253939	0.679904	1.29725	1.38446	0.525034	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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