TCONS_00073187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073187
Unique NameTCONS_00073187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073187 ID=TCONS_00073187|Name=TCONS_00073187|organism=Clytia hemisphaerica|type=transcript|length=301bp
TGGTTGGTTTTGCTGTTGGTTTGTGGGCGTGGTCAAGTGGTTGGTACAAG
AAGTCATCATGAACATTGAGAAGTTAGAGCAAGAGGTCTTTGATATGGTG
AATGACTTGGGGGAACAACACTTGGGTCAAGTATGCGAACACCTGGAGAT
ACCAACACAACAAGGTAATTCATCTTATCATCTGAGACGGAAGGTATTCC
GGAAACTAAGTGCCATGGAGGGGGAGGATTCCGAAGGGGAGGAGGTCCAG
ATGGGATTATTGACCCAAGTTAAAAGCTTTATTGACCATATACAGTCACC
A
Run BLAST on NCBI

protein sequence of TCONS_00073187-protein

>TCONS_00073187-protein ID=TCONS_00073187-protein|Name=TCONS_00073187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
GWFCCWFVGVVKWLVQEVIMNIEKLEQEVFDMVNDLGEQHLGQVCEHLEI
PTQQGNSSYHLRRKVFRKLSAMEGEDSEGEEVQMGLLTQVKSFIDHIQSP
Run BLAST on NCBI

transcript from alignment at scaffold_87:143375..143675

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073187 ID=TCONS_00073187|Name=TCONS_00073187|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_87:143375..143675 (Clytia hemisphaerica)
TGGTGACTGTATATGGTCAATAAAGCTTTTAACTTGGGTCAATAATCCCA
TCTGGACCTCCTCCCCTTCGGAATCCTCCCCCTCCATGGCACTTAGTTTC
CGGAATACCTTCCGTCTCAGATGATAAGATGAATTACCTTGTTGTGTTGG
TATCTCCAGGTGTTCGCATACTTGACCCAAGTGTTGTTCCCCCAAGTCAT
TCACCATATCAAAGACCTCTTGCTCTAACTTCTCAATGTTCATGATGACT
TCTTGTACCAACCACTTGACCACGCCCACAAACCAACAGCAAAACCAACC
A

Coding sequence (CDS) from alignment at scaffold_87:143375..143675

>TCONS_00073187 ID=TCONS_00073187|Name=TCONS_00073187|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_87:143375..143675 (Clytia hemisphaerica)
TGGTGACTGTATATGGTCAATAAAGCTTTTAACTTGGGTCAATAATCCCA
TCTGGACCTCCTCCCCTTCGGAATCCTCCCCCTCCATGGCACTTAGTTTC
CGGAATACCTTCCGTCTCAGATGATAAGATGAATTACCTTGTTGTGTTGG
TATCTCCAGGTGTTCGCATACTTGACCCAAGTGTTGTTCCCCCAAGTCAT
TCACCATATCAAAGACCTCTTGCTCTAACTTCTCAATGTTCATGATGACT
TCTTGTACCAACCACTTGACCACGCCCACAAACCAACAGCAAAACCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045399XLOC_045399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073187-exon-scaffold_87-1491911889:143375..143675TCONS_00073187-exon-scaffold_87-1491911889:143375..143675Clytia hemisphaericaexon
TCONS_00073187-exon-scaffold_87-1510915933:143375..143675TCONS_00073187-exon-scaffold_87-1510915933:143375..143675Clytia hemisphaericaexon
TCONS_00073187-exon-scaffold_87-1575043694:143375..143675TCONS_00073187-exon-scaffold_87-1575043694:143375..143675Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073187-proteinTCONS_00073187-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:143375..143675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5406	0	0.87217	0	0	0.820865	0.49517	0.927143	0	0	0	0	0	0	0.2187	0.234699	0.28913	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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