TCONS_00073182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073182
Unique NameTCONS_00073182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073182 ID=TCONS_00073182|Name=TCONS_00073182|organism=Clytia hemisphaerica|type=transcript|length=758bp
gacgattttcgataaatagaagcctttcaagtgctttgacgcaaattcga
ttattttgctactgcaggagcttcgaaagttaaaagcgACATCAAAAAAT
CGACAACCCGGGGTCAAattggaatagacgttaatctTTTTTGAATGTTA
CACACTATGTATATTACTAACAAAAAATACACtacataataaaaataaaa
cgtaaACACAAAAGGGTTTTATATGGTACAATTAGAATTTCCTGGGTCGT
TACCCGTACTGTAATTTTCTACttatattgttatatttttttccctTTAT
AAAATGTTTACATCACAGATTCTGCTCAAGGTTATCTAAGATAACCTTTC
GCGATCGCGAGCCTCGCACGCACCGAAGGAGCAACAACGTCAATTGCGTA
AAAACGCTTGTGACGTCTAGGATAGGCTAGTCGTCACAGGTTGAATTTTA
GAGAAAGTTCATGCGGTAATGGACTCTAAAAGTGAACAATTTTCAATTTC
CATGCAAAGAAATTATTTTacataaataaaaatttctttcaaaaaatcct
ATACATGTATGTGAATGGTCAGAGATTTAAATCAACTCTTTCCAAAAAGA
TATACATTGtgtattttttggaatttaaaaatttcttttgaagttTAATT
ATGTAAAACTAGGCACATCAACTGTCTAGATAATCAAATAATTCAAATGA
AACTTCAGATAGTGAGAGTGTCTTAGCCCTAAAtctccccgggggggggg
gggactag
Run BLAST on NCBI

transcript from alignment at scaffold_87:123153..123910

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073182 ID=TCONS_00073182|Name=TCONS_00073182|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at scaffold_87:123153..123910 (Clytia hemisphaerica)
ctagtcccccccccccccggggagaTTTAGGGCTAAGACACTCTCACTAT CTGAAGTTTCATTTGAATTATTTGATTATCTAGACAGTTGATGTGCCTAG TTTTACATAATTAaacttcaaaagaaatttttaaattccaaaaaatacaC AATGTATATCTTTTTGGAAAGAGTTGATTTAAATCTCTGACCATTCACAT ACATGTATaggattttttgaaagaaatttttatttatgtAAAATAATTTC TTTGCATGGAAATTGAAAATTGTTCACTTTTAGAGTCCATTACCGCATGA ACTTTCTCTAAAATTCAACCTGTGACGACTAGCCTATCCTAGACGTCACA AGCGTTTTTACGCAATTGACGTTGTTGCTCCTTCGGTGCGTGCGAGGCTC GCGATCGCGAAAGGTTATCTTAGATAACCTTGAGCAGAATCTGTGATGTA AACATTTTATAAagggaaaaaaatataacaatataaGTAGAAAATTACAG TACGGGTAACGACCCAGGAAATTCTAATTGTACCATATAAAACCCTTTTG TGTttacgttttatttttattatgtaGTGTATTTTTTGTTAGTAATATAC ATAGTGTGTAACATTCAAAAAagattaacgtctattccaatTTGACCCCG GGTTGTCGATTTTTTGATGTcgcttttaactttcgaagctcctgcagtag caaaataatcgaatttgcgtcaaagcacttgaaaggcttctatttatcga aaatcgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045394XLOC_045394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073182-exon-scaffold_87-1491911889:123153..123910TCONS_00073182-exon-scaffold_87-1491911889:123153..123910Clytia hemisphaericaexon
TCONS_00073182-exon-scaffold_87-1510915933:123153..123910TCONS_00073182-exon-scaffold_87-1510915933:123153..123910Clytia hemisphaericaexon
TCONS_00073182-exon-scaffold_87-1575043694:123153..123910TCONS_00073182-exon-scaffold_87-1575043694:123153..123910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:123153..123910 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0344132 0.315086 0.179592 1.2536 25.327 21.1167 8.49177 7.5978 1.39649 2.56159 0.538885 1.09394 0.397634 0.341536 0 0.119209 0.486413 0.20741 0.144463 0.359423 0.832593 0.295046 0.0860185 0.0761881 0.139144 0.185563 0.150991 0.224729 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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