TCONS_00073177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073177
Unique NameTCONS_00073177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073177 ID=TCONS_00073177|Name=TCONS_00073177|organism=Clytia hemisphaerica|type=transcript|length=280bp
GGATTGAAGAAATTGAAGGAGAATGTTGAAACATACCAGTATCAAAGAAC
CAATCTATTAAGTTGTATGACATTGgctgttgaaaatttgcatgcCACCA
TCAACAAGAAACAAGGAACACAAACCATGGTACAATATGCacaatcattt
tcttcttctatcAAAGAATCTATCAAGGCTATTTCAAACTGGAGCACTCA
CTATTTTACAAGCAGGGAAAGATGGTATCCTGTTTCCGAAACAGCAGTGA
AATTGGAAGATATAACATTTCCAAAACGAG
Run BLAST on NCBI

transcript from alignment at scaffold_87:58185..58464

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073177 ID=TCONS_00073177|Name=TCONS_00073177|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_87:58185..58464 (Clytia hemisphaerica)
CTCGTTTTGGAAATGTTATATCTTCCAATTTCACTGCTGTTTCGGAAACA
GGATACCATCTTTCCCTGCTTGTAAAATAGTGAGTGCTCCAGTTTGAAAT
AGCCTTGATAGATTCTTTgatagaagaagaaaatgattgtGCATATTGTA
CCATGGTTTGTGTTCCTTGTTTCTTGTTGATGGTGgcatgcaaattttca
acagcCAATGTCATACAACTTAATAGATTGGTTCTTTGATACTGGTATGT
TTCAACATTCTCCTTCAATTTCTTCAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045389XLOC_045389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073177-exon-scaffold_87-1491911889:58185..58464TCONS_00073177-exon-scaffold_87-1491911889:58185..58464Clytia hemisphaericaexon
TCONS_00073177-exon-scaffold_87-1510915933:58185..58464TCONS_00073177-exon-scaffold_87-1510915933:58185..58464Clytia hemisphaericaexon
TCONS_00073177-exon-scaffold_87-1575043694:58185..58464TCONS_00073177-exon-scaffold_87-1575043694:58185..58464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:58185..58464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.98874	0	0.559751	0.547629	0.666685	1.05365	1.90677	1.7851	0.416596	0.516021	0	1.31699	2.30153	0.682903	0.28072	0.903765	0	0	1.05105	0	0	0	1.13367	1.03067	1.06157	3.78969	1.35576	0	0.548712	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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