TCONS_00073173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073173
Unique NameTCONS_00073173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073173 ID=TCONS_00073173|Name=TCONS_00073173|organism=Clytia hemisphaerica|type=transcript|length=874bp
CTAAAAtttaggggtgattttttttaattctgagAATATTCGTGAAAtta
ttaaattccgcgaaaatttcttcccttaagttaAATaaatttgagttata
gaggttcgagttaaagaggctCTACTgtataaaaaagcgtgttttTACAT
TACGATGAAagaaattatatttcaaaatccaaaagcAGATGGAATCTGAC
ATTCCAATTCGAAAACACAAGACAGAGTTGGCTGGGTGGTACATAGTAGT
AACTGGTGCCAAAAAGTAAACTAAATGTAGAAAAATGCTCCAATGTTTAA
GATTAATTAATAGGGTACGGGACCGAGGCTGACAAATTTAATTCATTGTT
CTACGGAAAAAAATTATGGTGGTCCGTcggtataataaaaaaaatcttaa
aatctaaTGTCAGAAATAAAGATCTAAGTATAATTTGTGACGTTTTAAAG
CAGCAAACTTTTTTCCGCCATTGTGACATTTTGAATTCATATAAGTTCTG
GGATGAATTTACACTTTTTTAAGCTTGGGgcgggtcggtcgggcccgtag
aacagaATAAATCAATTCTCGCCCAATACCATCTTAAGACAATAAAATCT
TAGCGGTAAAACAAAACGTCAATtatcactaatgaagtatctaCATGATT
TGTGTAGCATGGTTAGAGATGTCTGAATGGTTGACCAAGTGGAATGAAAG
GAACGAACTAATTCATTAGATTAGATAGAAGACGGTAAGTGTTGAAACAA
TTATCTGAGAAAAAAGGCtcagaaaaaagattaaaatataTCCGCCCGCC
CCAGAAACTTTTCTCCAACTAAGGTTCATTTAGGTGCTAATCCCATTTTC
TAATTCTGTTTCATGATAttgtta
Run BLAST on NCBI

transcript from alignment at scaffold_87:35422..36295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073173 ID=TCONS_00073173|Name=TCONS_00073173|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at scaffold_87:35422..36295 (Clytia hemisphaerica)
taacaaTATCATGAAACAGAATTAGAAAATGGGATTAGCACCTAAATGAA
CCTTAGTTGGAGAAAAGTTTCTGGGGCGGGCGGAtatattttaatctttt
ttctgaGCCTTTTTTCTCAGATAATTGTTTCAACACTTACCGTCTTCTAT
CTAATCTAATGAATTAGTTCGTTCCTTTCATTCCACTTGGTCAACCATTC
AGACATCTCTAACCATGCTACACAAATCATGtagatacttcattagtgat
aATTGACGTTTTGTTTTACCGCTAAGATTTTATTGTCTTAAGATGGTATT
GGGCGAGAATTGATTTATtctgttctacgggcccgaccgacccgcCCCAA
GCTTAAAAAAGTGTAAATTCATCCCAGAACTTATATGAATTCAAAATGTC
ACAATGGCGGAAAAAAGTTTGCTGCTTTAAAACGTCACAAATTATACTTA
GATCTTTATTTCTGACAttagattttaagattttttttattataccgACG
GACCACCATAATTTTTTTCCGTAGAACAATGAATTAAATTTGTCAGCCTC
GGTCCCGTACCCTATTAATTAATCTTAAACATTGGAGCATTTTTCTACAT
TTAGTTTACTTTTTGGCACCAGTTACTACTATGTACCACCCAGCCAACTC
TGTCTTGTGTTTTCGAATTGGAATGTCAGATTCCATCTgcttttggattt
tgaaatataatttctTTCATCGTAATGTAaaaacacgcttttttatacAG
TAGagcctctttaactcgaacctctataactcaaatttATTtaacttaag
ggaagaaattttcgcggaatttaataaTTTCACGAATATTctcagaatta
aaaaaaatcacccctaaaTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045385XLOC_045385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073173-exon-scaffold_87-1491911889:35422..36295TCONS_00073173-exon-scaffold_87-1491911889:35422..36295Clytia hemisphaericaexon
TCONS_00073173-exon-scaffold_87-1510915933:35422..36295TCONS_00073173-exon-scaffold_87-1510915933:35422..36295Clytia hemisphaericaexon
TCONS_00073173-exon-scaffold_87-1575043694:35422..36295TCONS_00073173-exon-scaffold_87-1575043694:35422..36295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:35422..36295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.05335	0	0.0604056	0.17829	0	0	0.13718	0	0	0	0	0.0355308	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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