TCONS_00073169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073169
Unique NameTCONS_00073169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073169 ID=TCONS_00073169|Name=TCONS_00073169|organism=Clytia hemisphaerica|type=transcript|length=457bp
GCATCGGTGACAACttatttcaattcttcaaaGTACTACACCACAAGAAG
AAATGATaactttctttcaaaagttgCAATAATTGGACGTAAAAAAAACG
aaGCTTAGAAATCGGAAGAAGGTGCTAAAAGCGAAGACGACTATCTCTGA
CGTCGATAAAATGGTGATCGATAAGGTTTTAACGATGGACTTCATGTCGT
CCGAAGATGAAAAGGAGGACTCAAGGTTCAACCACTGAGATGGCGTTCGC
AAAAATGTGATAAGTACTTTGAAGCGTTGGATAAAAAGACAATGATAAAG
CTATCGAAAAAAGTGCGAAGACAAACTGTTATATGCAAGATGGGGCCTTT
CAATTGAAGGGCAGCACCTGAGGTCGACGAATCAAATGCATGGACAATAA
TAACTAAATAAACCTTTAACCTATTCattttgttatattatgttaCTATT
TTGCTTN
Run BLAST on NCBI

transcript from alignment at scaffold_87:175150..175985-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073169 ID=TCONS_00073169|Name=TCONS_00073169|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at scaffold_87:175150..175985- (Clytia hemisphaerica)
GCATCGGTGACAACTTATTTCAATTCTTCAAAGTACTACACCACAAGAAG AAATGATAACTTTCTTTCAAAAGTTGCAATAATTGGACGTAAAAAAAACG GTAAGAGGCCTTATGCATAAAATCTATGAACTATACTGTGTTCTTTCATT TTCATAAAAACAATAGATTGATGTAATGAAGTGGCCACCCATCTTTGTGG GCATACTATCACAATAGCTGAAGCTTTCTGTATTGAAACCGTTAACACGT ATTTGAAAAACATATATGTTAGGCTTTTTTATAGATTTACCGGGGGCTTA CTTGAAAGATGTTGTGCGCAAAAATTTTGCCGGCATTGATAGTAGCTGAA CACTTTGAAGAAGTTCGGAAAACATTAAATCACAGATTTCATTCAATAGT GCTTTATCTTTTCAACCTGCATTACTTTTCAGCTTTTACAGTATTACTTC AATCATTTTTGTCTTTTTCCTTTTTTCAGAAGCTTAGAAATCGGAAGAAG GTGCTAAAAGCGAAGACGACTATCTCTGACGTCGATAAAATGGTGATCGA TAAGGTTTTAACGATGGACTTCATGTCGTCCGAAGATGAAAAGGAGGACT CAAGGTTCAACCACTGAGATGGCGTTCGCAAAAATGTGATAAGTACTTTG AAGCGTTGGATAAAAAGACAATGATAAAGCTATCGAAAAAAGTGCGAAGA CAAACTGTTATATGCAAGATGGGGCCTTTCAATTGAAGGGCAGCACCTGA GGTCGACGAATCAAATGCATGGACAATAATAACTAAATAAACCTTTAACC TATTCATTTTGTTATATTATGTTACTATTTTGCTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045381XLOC_045381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073169-exon-scaffold_87-1575043694:175886..175985TCONS_00073169-exon-scaffold_87-1575043694:175886..175985Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1575043694:175150..175506TCONS_00073169-exon-scaffold_87-1575043694:175150..175506Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1510915933:175886..175985TCONS_00073169-exon-scaffold_87-1510915933:175886..175985Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1510915933:175150..175506TCONS_00073169-exon-scaffold_87-1510915933:175150..175506Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1491911889:175886..175985TCONS_00073169-exon-scaffold_87-1491911889:175886..175985Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1491911889:175150..175506TCONS_00073169-exon-scaffold_87-1491911889:175150..175506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:175150..175985 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.658354 0.461549 0 3.49323 2.61189 3.49856 2.24736 1.15693 1.31679 2.99855 1.10375 1.93606 0.701766 0.976956 1.01009 0.987801 1.17286 1.01427 2.12198 1.14898 1.80255 1.50448 0.983085 0.602991 0.807566 4.21427 4.91029 0.550794 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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