TCONS_00073153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073153
Unique NameTCONS_00073153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073153 ID=TCONS_00073153|Name=TCONS_00073153|organism=Clytia hemisphaerica|type=transcript|length=351bp
CCCTTCACATTCTATTGGGAAAACTTTGAACTTTTTTGTCCTTGTGTTTC
AATTCAGATGGAATGAACCATGATTTTTTGCCgttgtttatattttcttt
tcttttatctCGTTCGAGATGTTCTGTAAGTAAGACAAGTAGCCTGGCGG
CATTACGGCCCAGCATAAGACGTCTTTCATTGTATCGAATGTACAATATT
AATCTGACACCAAGTGGCCTATTCCCGTGACGCTTCAAGGCCTCTCGAAC
ATAGTTTTTCATATTTATATTGTTAAAATGTATATTTCTGGTACGCAGCC
TCCCTTCTATAGAGGTTTTGTAGATGGCACTGAATAATCTGTAGTATTTC
A
Run BLAST on NCBI

transcript from alignment at scaffold_86:1414375..1414725

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073153 ID=TCONS_00073153|Name=TCONS_00073153|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at scaffold_86:1414375..1414725 (Clytia hemisphaerica)
TGAAATACTACAGATTATTCAGTGCCATCTACAAAACCTCTATAGAAGGG
AGGCTGCGTACCAGAAATATACATTTTAACAATATAAATATGAAAAACTA
TGTTCGAGAGGCCTTGAAGCGTCACGGGAATAGGCCACTTGGTGTCAGAT
TAATATTGTACATTCGATACAATGAAAGACGTCTTATGCTGGGCCGTAAT
GCCGCCAGGCTACTTGTCTTACTTACAGAACATCTCGAACGagataaaag
aaaagaaaatataaacaacGGCAAAAAATCATGGTTCATTCCATCTGAAT
TGAAACACAAGGACAAAAAAGTTCAAAGTTTTCCCAATAGAATGTGAAGG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045370XLOC_045370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073153-exon-scaffold_86-1491911889:1414375..1414725TCONS_00073153-exon-scaffold_86-1491911889:1414375..1414725Clytia hemisphaericaexon
TCONS_00073153-exon-scaffold_86-1510915933:1414375..1414725TCONS_00073153-exon-scaffold_86-1510915933:1414375..1414725Clytia hemisphaericaexon
TCONS_00073153-exon-scaffold_86-1575043694:1414375..1414725TCONS_00073153-exon-scaffold_86-1575043694:1414375..1414725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1414375..1414725 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.80771	7.99695	3.59975	3.13836	1.23764	1.02942	3.22964	3.97591	34.6207	31.3749	7.74582	21.6422	3.66289	5.35069	0.933129	0.771516	1.3655	0.917636	3.85255	2.68741	1.76826	0.500954	0	1.73108	0	0	2.05605	0.930087	0	1.60108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top