TCONS_00073150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073150
Unique NameTCONS_00073150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073150 ID=TCONS_00073150|Name=TCONS_00073150|organism=Clytia hemisphaerica|type=transcript|length=260bp
CACAACGCGTTGAAGAaatttagaataacttttatagAATTCGATAATAT
GAATACGCACGGTATCGGTTTTTTTTGGATCTTCCTTAGCTAAAAAGTAT
TCACCAGTGTGGTAAAATCCCATCTCATCTTTATCAAATGGCTCAAATCC
GATGAATAGTGGTTGTATATCCTTGGCTTTGAAGTCAGGTGGAATGAACC
ATGATTTCTTGTCGTCAATCATCgcaatttttttaatgtttttgatttta
atgttttttt
Run BLAST on NCBI

transcript from alignment at scaffold_86:1399621..1399880

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073150 ID=TCONS_00073150|Name=TCONS_00073150|organism=Clytia hemisphaerica|type=transcript|length=260bp|location=Sequence derived from alignment at scaffold_86:1399621..1399880 (Clytia hemisphaerica)
aaaaaaacattaaaatcaaaaacattaaaaaaattgcGATGATTGACGAC
AAGAAATCATGGTTCATTCCACCTGACTTCAAAGCCAAGGATATACAACC
ACTATTCATCGGATTTGAGCCATTTGATAAAGATGAGATGGGATTTTACC
ACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAAAAAAAACCGATACC
GTGCGTATTCATATTATCGAATTctataaaagttattctaaattTCTTCA
ACGCGTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045367XLOC_045367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073150-exon-scaffold_86-1491911889:1399621..1399880TCONS_00073150-exon-scaffold_86-1491911889:1399621..1399880Clytia hemisphaericaexon
TCONS_00073150-exon-scaffold_86-1510915933:1399621..1399880TCONS_00073150-exon-scaffold_86-1510915933:1399621..1399880Clytia hemisphaericaexon
TCONS_00073150-exon-scaffold_86-1575043694:1399621..1399880TCONS_00073150-exon-scaffold_86-1575043694:1399621..1399880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1399621..1399880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4353	18.1128	11.0451	8.85364	0	0	0	0	2.36302	0.475709	3.03446	5.09115	2.56496	2.42834	3.83234	5.3088	2.32568	3.31973	3.89531	4.39935	1.26945	0	3.49263	4.4363	0.704835	0	0.821481	0	2.56618	5.0056
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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