TCONS_00073143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073143
Unique NameTCONS_00073143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073143 ID=TCONS_00073143|Name=TCONS_00073143|organism=Clytia hemisphaerica|type=transcript|length=3405bp
TGGTACAAATGAAGTATAATTTAAGAATGATTCAATGCAAGGTCTCCAAA
ATGGCTTAGAATATTCTCATATTATAAAGTATATATTTTAAACCAATTAG
TCATACAAGCATACAAAGTATTTGAGAGAAACCTTAAAACtgattattct
tataaagaaatcaTGTGTTTTCCTGAAACGAGTGTCAGCACTCTCCGTCT
TACAATGAAATGTTGTTTTTTGGTACCGTAACAATCGTTTTCTTCCTTTC
TTTCAGTATATGACAAGCTAAGGGAAGCCTCTCTTTAGTAcaacaaaaaa
acatcaaaagaaaaataaattgctGAACAAAGGAGAACGCTGACCACAAA
ATCTGTCGGATTAGAAACGACAGTCAAGAAAAGAAAAGGGTGCAAGTTGC
TACATACACTGGACTGGTAATTAGtcactgttttgtttttgtattgaaaa
gttggttCGTGACAGTATTGAATCGAGCAGAGGTAAAATACGCGAGTTAA
CAAGATCAAGAACACTTTAACGTTTATAACACATCATTGGACAGAAAATA
CGAAAAGTTGAAATAATAAAGTCGCAATAATCGAACTGCAGAACTAATAC
TGAATACAGACTACATTAATTTACGGAATAAATCTATCAAAGAAGAGATT
TATAATAAAGGCTTGAATAGTAGcgttaaatttaaatttacttcTACGTA
ACCATGAGTGTTCTAGTCGATTCAACCAATCAAGATGTATTGAATATACC
ACCACGCAAAAGTGTGTCAGCGCATCGCTTAAATTACCGGAAACAGAGCA
CTGATGGTGaagtcaaagtcaaaaaatcgaGTGTTATTCGCAGGAAAAAG
AATAATTTGGGAAACCAAAATTTCCGACATTCGGTCCACGATATATCGGG
AGCTTTAAATGAGCTTAATATCAAGGAAGAGGATGCAGGAGCCGATGGGG
TTGTCGGCGGATCCGCTAAACTGCACACTGAACGCGCCCGCTTGAGGCGT
ACGAAGAGTTTCCACGTATCCGAGGATCACGCGCATCAGAATATATCGCA
ACGTGACCGGAGTGAAATCTTAAAGCAGTACGTTGCCAATAAGTTTGAAC
TGGATATGGAAACTTTAGAAAACGATCTTAATAGCGATAAAGTACCGAAA
ATCGATTTTAAAGAAAGTTCGTTACCAATTCATGAAGCTATCATGAAGAA
ATATGAACAAGATTCTTTAAAAGAACTTTCCTTCTTATTATTGAAAAATG
ACTGTTTGAATATCGAACAGACCAATGCAGATGGTATGACACCGTTAGCT
TTCGCCGTCAGCTTGGAACTACACGATGTAGTACGTCTCTTGATCGCATT
TGGAGCCACGGTCAATTGTAAAGACAATTATGGTGAGGCTCCATTACGTT
ACGCAGTAGATAACGGCGATTTTGAAATGGCCAGTTTGTTGATTTCGAAT
GGCGCAAACGCGTCAGTTGTACAGAATggattttaacaattttttgacTG
TTCATTTGACGTAGAAAGCGTTTTGGTTAGAGATCGTTCTTTGGAGATTG
GTGAAGTGGAGGAATTGAGGATACCACTGAGCTGGaattctaaaactctc
ctttttTATAGCTATTAACACTTTGAAAGAGctttattaaaatcaaaact
cgGTTTGAGTTGATAGAGGGACAAGCTAAACTCTTTTTGGAACACTAAAA
ACTGCAAGGCTCAAATTTTAAACCTTCtttaaaaactattttcttcattt
tgaagaatttaagTATAATATGGACACAATTCTGTGATACcgttgaaaaa
aatcaagggtATTGTACAATATAAATGGTGGCATTTGGAAGACAAGgctt
tattttggaaaatagaTATTATCTTGAGGTGttatctttttatataaaat
tttaattgtaaCAATTCAATTTTACAGTATTAACTAAtataatttctttc
aaatcgaaACCCTTAATATTGGATGGGATTGAAAAAATGAGTATTTACAA
GCAATTATTGGTAAGTTTAGTGGATTTCCTTTACCAAACCAGGGATGGTA
GTCACTTGACAAATACAATCTCAcaccccttctcatagaccttctgggaa
cccttcccactggaacaATTAGCTAAAacatcgtccccagtggaaaatta
tactctcatttttgtcccgctgaaaataataaaataaacaaatcctcact
gcaaaatattatgccaTTTTTTTCCCCACTAAATTTTCTGGctaaaaaac
aatggaattcaaatccccagccataaaaaacacgggaatatcaatcccca
tcgagttttggtccatCATTTtaacccccactggctgataaaatcccacc
gggtctgtgagaaaggggtgtaatctCATCTCATTAATTTTTGTGCTATC
TATAAGACAAAATAAGGGAAACTGCTGGtacatttttaatatttttgctt
ttggATCAATTTATAATTTGGAAAGTTTGACAATTTGAAACCAGCTTATG
ACCAATATATATGAagaaatttatctttttcaaCTTGTAGATAATGTACA
TAGTAAtataaattttaatgaaaaatgctttttCTATAGATTAAAAAACC
CTAAAATTATTGATATTATTCAAACCTCTGCAACCCTACCCTATCTCGAT
TAACTAACAAAAATCTTCTAGAAAGACTTAAGTGTTGAGGGTACAAtctt
tttgtaaacttttttttcatcaaactcATTAAAACGACCAGTCTTATCac
ggaaagaaaaaacaaaaactaactTTCATTGTCATGGCGAAATCGGGTAA
GAGTTGACAAAATCGTCAACAAAAGGTACTATAAAAGAATTAGAAAAACA
CACTCTCTCTCGAGATGGAtattttccatccccactaaattttttggcta
gaaaacaatggaattcaaatccccagccataaaaaacacgggaatatcaa
tccccatcgagttttggtccatCATTTTAACCCCCACTGGTTGATAAAAT
CCCACCAGGTCTGTGAGGAGGGGGTGTAATCTCATCTCATTAATTTTTGT
GCTATCTATAAGACAAAATAAGGGAAACTGCTGGtacatttttaatattt
ttgcttttggATCAATTTATAATTTGGAAAGTTTGACAATTTGAAACCAG
CTTATGACCAATATATATGAagaaatttatctttttcaaCTTGTAGATAA
TGTACATAGTAatatagattttgatgaaaaatgcttTTTCTATAGATTCA
AAAACCCTAAAATTATTGATATTATTCAAACCTCTGCaacccggggggag
gggggacTGGGCTTGcagactgacggtatgtgcgggccaaaaatgggctt
ttaaaattgcacccttaagGTGCTGCAAAAGTcggtgaaaatcataccct
tagag
Run BLAST on NCBI

protein sequence of TCONS_00073143-protein

>TCONS_00073143-protein ID=TCONS_00073143-protein|Name=TCONS_00073143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSVLVDSTNQDVLNIPPRKSVSAHRLNYRKQSTDGEVKVKKSSVIRRKKN
NLGNQNFRHSVHDISGALNELNIKEEDAGADGVVGGSAKLHTERARLRRT
KSFHVSEDHAHQNISQRDRSEILKQYVANKFELDMETLENDLNSDKVPKI
DFKESSLPIHEAIMKKYEQDSLKELSFLLLKNDCLNIEQTNADGMTPLAF
AVSLELHDVVRLLIAFGATVNCKDNYGEAPLRYAVDNGDFEMASLLISNG
ANASVVQNGF
Run BLAST on NCBI

transcript from alignment at scaffold_86:1114432..1117836

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073143 ID=TCONS_00073143|Name=TCONS_00073143|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at scaffold_86:1114432..1117836 (Clytia hemisphaerica)
ctctaagggtatgattttcaccgACTTTTGCAGCACcttaagggtgcaat tttaaaagcccatttttggcccgcacataccgtcagtctgCAAGCCCAgt cccccctccccccgggttGCAGAGGTTTGAATAATATCAATAATTTTAGG GTTTTTGAATCTATAGAAAaagcatttttcatcaaaatctatatTACTAT GTACATTATCTACAAGttgaaaaagataaatttctTCATATATATTGGTC ATAAGCTGGTTTCAAATTGTCAAACTTTCCAAATTATAAATTGATccaaa agcaaaaatattaaaaatgtaCCAGCAGTTTCCCTTATTTTGTCTTATAG ATAGCACAAAAATTAATGAGATGAGATTACACCCCCTCCTCACAGACCTG GTGGGATTTTATCAACCAGTGGGGGTTAAAATGatggaccaaaactcgat ggggattgatattcccgtgttttttatggctggggatttgaattccattg ttttctagccaaaaaatttagtggggatggaaaataTCCATCTCGAGAGA GAGTGTGTTTTTCTAATTCTTTTATAGTACCTTTTGTTGACGATTTTGTC AACTCTTACCCGATTTCGCCATGACAATGAAagttagtttttgttttttc tttccgtGATAAGACTGGTCGTTTTAATgagtttgatgaaaaaaaagttt acaaaaagaTTGTACCCTCAACACTTAAGTCTTTCTAGAAGATTTTTGTT AGTTAATCGAGATAGGGTAGGGTTGCAGAGGTTTGAATAATATCAATAAT TTTAGGGTTTTTTAATCTATAGaaaaagcatttttcattaaaatttataT TACTATGTACATTATCTACAAGttgaaaaagataaatttctTCATATATA TTGGTCATAAGCTGGTTTCAAATTGTCAAACTTTCCAAATTATAAATTGA TccaaaagcaaaaatattaaaaatgtaCCAGCAGTTTCCCTTATTTTGTC TTATAGATAGCACAAAAATTAATGAGATGagattacacccctttctcaca gacccggtgggattttatcagccagtgggggttaAAATGatggaccaaaa ctcgatggggattgatattcccgtgttttttatggctggggatttgaatt ccattgttttttagCCAGAAAATTTAGTGGGGAAAAAAAtggcataatat tttgcagtgaggatttgtttattttattattttcagcgggacaaaaatga gagtataattttccactggggacgatgtTTTAGCTAATtgttccagtggg aagggttcccagaaggtctatgagaaggggtgTGAGATTGTATTTGTCAA GTGACTACCATCCCTGGTTTGGTAAAGGAAATCCACTAAACTTACCAATA ATTGCTTGTAAATACTCATTTTTTCAATCCCATCCAATATTAAGGGTttc gatttgaaagaaattataTTAGTTAATACTGTAAAATTGAATTGttacaa ttaaaattttatataaaaagataaCACCTCAAGATAATAtctattttcca aaataaagcCTTGTCTTCCAAATGCCACCATTTATATTGTACAATaccct tgatttttttcaacgGTATCACAGAATTGTGTCCATATTATActtaaatt cttcaaaatgaagaaaatagtttttaaaGAAGGTTTAAAATTTGAGCCTT GCAGTTTTTAGTGTTCCAAAAAGAGTTTAGCTTGTCCCTCTATCAACTCA AACcgagttttgattttaataaagCTCTTTCAAAGTGTTAATAGCTATAa aaaaggagagttttagaattCCAGCTCAGTGGTATCCTCAATTCCTCCAC TTCACCAATCTCCAAAGAACGATCTCTAACCAAAACGCTTTCTACGTCAA ATGAACAgtcaaaaaattgttaaaatccATTCTGTACAACTGACGCGTTT GCGCCATTCGAAATCAACAAACTGGCCATTTCAAAATCGCCGTTATCTAC TGCGTAACGTAATGGAGCCTCACCATAATTGTCTTTACAATTGACCGTGG CTCCAAATGCGATCAAGAGACGTACTACATCGTGTAGTTCCAAGCTGACG GCGAAAGCTAACGGTGTCATACCATCTGCATTGGTCTGTTCGATATTCAA ACAGTCATTTTTCAATAATAAGAAGGAAAGTTCTTTTAAAGAATCTTGTT CATATTTCTTCATGATAGCTTCATGAATTGGTAACGAACTTTCTTTAAAA TCGATTTTCGGTACTTTATCGCTATTAAGATCGTTTTCTAAAGTTTCCAT ATCCAGTTCAAACTTATTGGCAACGTACTGCTTTAAGATTTCACTCCGGT CACGTTGCGATATATTCTGATGCGCGTGATCCTCGGATACGTGGAAACTC TTCGTACGCCTCAAGCGGGCGCGTTCAGTGTGCAGTTTAGCGGATCCGCC GACAACCCCATCGGCTCCTGCATCCTCTTCCTTGATATTAAGCTCATTTA AAGCTCCCGATATATCGTGGACCGAATGTCGGAAATTTTGGTTTCCCAAA TTATTCTTTTTCCTGCGAATAACACtcgattttttgactttgacttCACC ATCAGTGCTCTGTTTCCGGTAATTTAAGCGATGCGCTGACACACTTTTGC GTGGTGGTATATTCAATACATCTTGATTGGTTGAATCGACTAGAACACTC ATGGTTACGTAgaagtaaatttaaatttaacgCTACTATTCAAGCCTTTA TTATAAATCTCTTCTTTGATAGATTTATTCCGTAAATTAATGTAGTCTGT ATTCAGTATTAGTTCTGCAGTTCGATTATTGCGACTTTATTATTTCAACT TTTCGTATTTTCTGTCCAATGATGTGTTATAAACGTTAAAGTGTTCTTGA TCTTGTTAACTCGCGTATTTTACCTCTGCTCGATTCAATACTGTCACGaa ccaacttttcaatacaaaaacaaaacagtgaCTAATTACCAGTCCAGTGT ATGTAGCAACTTGCACCCTTTTCTTTTCTTGACTGTCGTTTCTAATCCGA CAGATTTTGTGGTCAGCGTTCTCCTTTGTTCagcaatttatttttctttt gatgtttttttgttgTACTAAAGAGAGGCTTCCCTTAGCTTGTCATATAC TGAAAGAAAGGAAGAAAACGATTGTTACGGTACCAAAAAACAACATTTCA TTGTAAGACGGAGAGTGCTGACACTCGTTTCAGGAAAACACAtgatttct ttataagaataatcaGTTTTAAGGTTTCTCTCAAATACTTTGTATGCTTG TATGACTAATTGGTTTAAAATATATACTTTATAATATGAGAATATTCTAA GCCATTTTGGAGACCTTGCATTGAATCATTCTTAAATTATACTTCATTTG TACCA

Coding sequence (CDS) from alignment at scaffold_86:1114432..1117836

>TCONS_00073143 ID=TCONS_00073143|Name=TCONS_00073143|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_86:1114432..1117836 (Clytia hemisphaerica)
ttaaaatccATTCTGTACAACTGACGCGTTTGCGCCATTCGAAATCAACA
AACTGGCCATTTCAAAATCGCCGTTATCTACTGCGTAACGTAATGGAGCC
TCACCATAATTGTCTTTACAATTGACCGTGGCTCCAAATGCGATCAAGAG
ACGTACTACATCGTGTAGTTCCAAGCTGACGGCGAAAGCTAACGGTGTCA
TACCATCTGCATTGGTCTGTTCGATATTCAAACAGTCATTTTTCAATAAT
AAGAAGGAAAGTTCTTTTAAAGAATCTTGTTCATATTTCTTCATGATAGC
TTCATGAATTGGTAACGAACTTTCTTTAAAATCGATTTTCGGTACTTTAT
CGCTATTAAGATCGTTTTCTAAAGTTTCCATATCCAGTTCAAACTTATTG
GCAACGTACTGCTTTAAGATTTCACTCCGGTCACGTTGCGATATATTCTG
ATGCGCGTGATCCTCGGATACGTGGAAACTCTTCGTACGCCTCAAGCGGG
CGCGTTCAGTGTGCAGTTTAGCGGATCCGCCGACAACCCCATCGGCTCCT
GCATCCTCTTCCTTGATATTAAGCTCATTTAAAGCTCCCGATATATCGTG
GACCGAATGTCGGAAATTTTGGTTTCCCAAATTATTCTTTTTCCTGCGAA
TAACACtcgattttttgactttgacttCACCATCAGTGCTCTGTTTCCGG
TAATTTAAGCGATGCGCTGACACACTTTTGCGTGGTGGTATATTCAATAC
ATCTTGATTGGTTGAATCGACTAGAACACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045360XLOC_045360Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073143-proteinTCONS_00073143-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073143-exon-scaffold_86-1491911889:1114432..1117836TCONS_00073143-exon-scaffold_86-1491911889:1114432..1117836Clytia hemisphaericaexon
TCONS_00073143-exon-scaffold_86-1510915933:1114432..1117836TCONS_00073143-exon-scaffold_86-1510915933:1114432..1117836Clytia hemisphaericaexon
TCONS_00073143-exon-scaffold_86-1575043694:1114432..1117836TCONS_00073143-exon-scaffold_86-1575043694:1114432..1117836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1114432..1117836 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188711 0.119074 0.138256 0.368897 0.284428 0.295735 1.05629 1.01559 0.5091 0.336036 0.438612 0.280933 6.34987 5.95429 10.9729 9.87171 11.6255 9.062 5.14491 2.34786 7.49131 6.87328 18.3773 23.2233 12.3638 11.4584 87.9026 49.4151 18.5641 19.3681
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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