TCONS_00073136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073136
Unique NameTCONS_00073136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073136 ID=TCONS_00073136|Name=TCONS_00073136|organism=Clytia hemisphaerica|type=transcript|length=565bp
ACTTAAAGCCAATATATCATTGCCCTTTTCAAAATGCTTTATGAAGCATg
ttaagaaatttaaaattgaacTTCTGGTTAAAATCCTAAAGACAAATTGT
GGTTCGTCATGCCCTTCTATATCAGCGAAGTATTGGGTCCTCTTACAGTA
TTTGGAGtatgatttccaaaagataTGTCAAACGCCATTCTCATCTCTTT
AAAAATGTCGTCCAAATCAACATCGCGACATATGCCTATATTTTCTTGTG
TCTGCGAAGTCCTCTTGCCGACAAAATCGGAGCCGCGGTAATATACCGTA
ATATTCGCACGTTCGTCTAACTTACTTCGATCCGTCGCGAATTGAAGTTA
GTAGAGTTGTGCTGACTTTATATTCGAAACACGGAACTGTTAAACATGTT
CGCGCGCGagttatctttttcttttttttgtagtACTTCTGTTTTTGTTG
ACCTTTAAGTCGTGTTGTTTCCCGTGAAACACAGTTGCTACTACCGTTAG
AACtctctaaaaaaactttttttgatatcACGATGGAATGCTGTGGTGTC
ACCTCGATGTGGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_86:999003..999567

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073136 ID=TCONS_00073136|Name=TCONS_00073136|organism=Clytia hemisphaerica|type=transcript|length=565bp|location=Sequence derived from alignment at scaffold_86:999003..999567 (Clytia hemisphaerica)
CAACCACATCGAGGTGACACCACAGCATTCCATCGTgatatcaaaaaaag tttttttagagaGTTCTAACGGTAGTAGCAACTGTGTTTCACGGGAAACA ACACGACTTAAAGGTCAACAAAAACAGAAGTactacaaaaaaaagaaaaa gataactCGCGCGCGAACATGTTTAACAGTTCCGTGTTTCGAATATAAAG TCAGCACAACTCTACTAACTTCAATTCGCGACGGATCGAAGTAAGTTAGA CGAACGTGCGAATATTACGGTATATTACCGCGGCTCCGATTTTGTCGGCA AGAGGACTTCGCAGACACAAGAAAATATAGGCATATGTCGCGATGTTGAT TTGGACGACATTTTTAAAGAGATGAGAATGGCGTTTGACAtatcttttgg aaatcataCTCCAAATACTGTAAGAGGACCCAATACTTCGCTGATATAGA AGGGCATGACGAACCACAATTTGTCTTTAGGATTTTAACCAGAAgttcaa ttttaaatttcttaacATGCTTCATAAAGCATTTTGAAAAGGGCAATGAT ATATTGGCTTTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045353XLOC_045353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073136-exon-scaffold_86-1491911889:999003..999567TCONS_00073136-exon-scaffold_86-1491911889:999003..999567Clytia hemisphaericaexon
TCONS_00073136-exon-scaffold_86-1510915933:999003..999567TCONS_00073136-exon-scaffold_86-1510915933:999003..999567Clytia hemisphaericaexon
TCONS_00073136-exon-scaffold_86-1575043694:999003..999567TCONS_00073136-exon-scaffold_86-1575043694:999003..999567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:999003..999567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.940747 1.69918 0.256249 0.359845 0 0.312063 0 0.0663707 0.0662785 0.0688308 0 0 0 0.0766797 0 0 0 0 0 0 0 0 0.136649 0.875013 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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