TCONS_00073128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073128
Unique NameTCONS_00073128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073128 ID=TCONS_00073128|Name=TCONS_00073128|organism=Clytia hemisphaerica|type=transcript|length=656bp
GAGATAATATTGAGGACACAACAGAAGGCTCTCACAAAATCTGTAAAACA
AGGATATTTTACGTAAAATATATTCGAGTGatctcaacctcgtccccgtg
tatcccaggctttatctacattactgattgacgccagagaatattatcta
gcgctatcagtaagcatcaaaaagcgtAACGAGGTTGGGGTGATCTATTA
TGGGtaattatttcatattttaagATGGCTTATGAGTTTTGTCTGATTGA
AACTTTGATTGACCTTTTCTTTTACGACGCATGTTTTTGTATCTTGTTGA
GAAAAAATTCAATCCTATGTGACCGATTGATGAGCATGGGTGCTTACTTA
ATGTTTATTTCAAGAAAGGTCAACTTTTTTTCTGTGCTTTGCTTGTTTTG
GTAAGTACATGGCTTGAAATGACGTTGATGATGATTGGAGATGTTTTGGA
CAGTGGCAATCGAAATTATAAGAATTCTAATGTTTTCAGACAGGGAAAAC
ACCAAACATTTACGAGATCTTTCNTGGAGATGTTTTGGACAGTGGCAATC
GAAATTATAAGAATTCTAATGTTTTCAGACAGGGAAAACACCACACATTT
ACGAGATCTTTCGCTCATTTCTTTGAGCATTATCTAGtctaaaaagtaga
aaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_86:892842..893497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073128 ID=TCONS_00073128|Name=TCONS_00073128|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_86:892842..893497 (Clytia hemisphaerica)
gttttttctactttttagaCTAGATAATGCTCAAAGAAATGAGCGAAAGA TCTCGTAAATGTGTGGTGTTTTCCCTGTCTGAAAACATTAGAATTCTTAT AATTTCGATTGCCACTGTCCAAAACATCTCCANGAAAGATCTCGTAAATG TTTGGTGTTTTCCCTGTCTGAAAACATTAGAATTCTTATAATTTCGATTG CCACTGTCCAAAACATCTCCAATCATCATCAACGTCATTTCAAGCCATGT ACTTACCAAAACAAGCAAAGCACAGAAAAAAAGTTGACCTTTCTTGAAAT AAACATTAAGTAAGCACCCATGCTCATCAATCGGTCACATAGGATTGAAT TTTTTCTCAACAAGATACAAAAACATGCGTCGTAAAAGAAAAGGTCAATC AAAGTTTCAATCAGACAAAACTCATAAGCCATcttaaaatatgaaataat taCCCATAATAGATCACCCCAACCTCGTTacgctttttgatgcttactga tagcgctagataatattctctggcgtcaatcagtaatgtagataaagcct gggatacacggggacgaggttgagatCACTCGAATATATTTTACGTAAAA TATCCTTGTTTTACAGATTTTGTGAGAGCCTTCTGTTGTGTCCTCAATAT TATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045345XLOC_045345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073128-exon-scaffold_86-1491911889:892842..893497TCONS_00073128-exon-scaffold_86-1491911889:892842..893497Clytia hemisphaericaexon
TCONS_00073128-exon-scaffold_86-1510915933:892842..893497TCONS_00073128-exon-scaffold_86-1510915933:892842..893497Clytia hemisphaericaexon
TCONS_00073128-exon-scaffold_86-1575043694:892842..893497TCONS_00073128-exon-scaffold_86-1575043694:892842..893497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:892842..893497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238106 0.0773968 0.585655 0.66939 0 0 0 0.288257 0.133883 0.165689 0.160822 0.158577 1.64043 1.26082 1.11688 0.628744 0.360718 0.625785 0.421853 0.176575 0.387144 0.449161 0.274496 0.166145 0.0852145 0 0 0 0.441739 0.448764
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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