TCONS_00073116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073116
Unique NameTCONS_00073116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073116 ID=TCONS_00073116|Name=TCONS_00073116|organism=Clytia hemisphaerica|type=transcript|length=479bp
aaaaaaacaaccgaTTTTTATGTCAATGCTGGGagtgaaaaaaacatttt
atccAAAGTGAACAAAAGTAAAAATTCGTGCATTTCAACAATGTAccaat
aaattttttaaagtgATTCTGTGGTTTCAGAAAAGATAGACATATACAGA
TAAAACTGTtgcaaaacctttaaaaatgcacaTGCATTTTGTCAGATTTT
CAGAACAGAAAAGTTGAAGTCTACACCTATGTAAGTCAATGTTGTCGCCC
CTGTATAATTGAATCCCTACACCCCTATTTCACTCAAAACATACAACCAC
ATTCATAGTCATTTAATTTAAATCCATTTAATCGCTCTACATATAAAATA
TACCATaaagttacaagttttggtgAGTTTGCGACCAAAATATCTCACCA
CCATCTCGTATATCTATCTAGAGCCGTTCTACCACTTTTCGATTCTACTT
ATGATGGACGTGAGACAATCGAGAGcact
Run BLAST on NCBI

transcript from alignment at scaffold_86:256733..257211

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073116 ID=TCONS_00073116|Name=TCONS_00073116|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_86:256733..257211 (Clytia hemisphaerica)
agtgCTCTCGATTGTCTCACGTCCATCATAAGTAGAATCGAAAAGTGGTA
GAACGGCTCTAGATAGATATACGAGATGGTGGTGAGATATTTTGGTCGCA
AACTcaccaaaacttgtaactttATGGTATATTTTATATGTAGAGCGATT
AAATGGATTTAAATTAAATGACTATGAATGTGGTTGTATGTTTTGAGTGA
AATAGGGGTGTAGGGATTCAATTATACAGGGGCGACAACATTGACTTACA
TAGGTGTAGACTTCAACTTTTCTGTTCTGAAAATCTGACAAAATGCAtgt
gcatttttaaaggttttgcaACAGTTTTATCTGTATATGTCTATCTTTTC
TGAAACCACAGAATcactttaaaaaatttattggTACATTGTTGAAATGC
ACGAATTTTTACTTTTGTTCACTTTggataaaatgtttttttcactCCCA
GCATTGACATAAAAAtcggttgttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045333XLOC_045333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073116-exon-scaffold_86-1491911889:256733..257211TCONS_00073116-exon-scaffold_86-1491911889:256733..257211Clytia hemisphaericaexon
TCONS_00073116-exon-scaffold_86-1510915933:256733..257211TCONS_00073116-exon-scaffold_86-1510915933:256733..257211Clytia hemisphaericaexon
TCONS_00073116-exon-scaffold_86-1575043694:256733..257211TCONS_00073116-exon-scaffold_86-1575043694:256733..257211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:256733..257211 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.158154	0.110727	0	0	0.087511	0.174779	0.635283	1.26842	0.0800709	0	0	0	0.146165	0	0	0	0	0	0	1.80174	1.53829	0.875056	0.594363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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