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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073109 ID=TCONS_00073109|Name=TCONS_00073109|organism=Clytia hemisphaerica|type=transcript|length=1924bp
ATATTTTGCAATTCTTTGAGGTTACCTATTCATTTGGGGTACCTAGCTGT
TTTGATGGAGGCTCTTGGGActgtatattttccaaatttaatatttcaaa
attttcaaattattcagttttttacCCCAGCACCCAGTTTCCCGAGTTTC
CcgattctcttgatgatttcaaAGGCACTCAAAAAGAAACAATTAGATTT
GATGGAACTCgtggacaaaagttgaaaagacGTCTTAGTTTCCCTTTTCT
AAATCTCTGATGCATTATATCAGAAAGAGTTATTTTTATAGCTACATCTT
ATCAAACAGAGttgtttttattctttgtaaaactagttttttcaatttga
attttcgAGAAGTCCATCTCTCAGATTTTCAGTCTGTTAgttctaattca
attttcatataGATACATTATATCAAAATCAGTTATTTTTTTGAAGGATT
CATTTTCAAGtatcaaaactttatattttctagaacttgaaaatttcact
ttaaaatgcacaaaaattgatgtcattaTCTTAAATGATACCGTAATATC
ATTTATTTTTGCATGCCTCTAATTTTCGCACCTTTTATTTTCGCGCAGCT
TTTTGAAATACTGTATGGTATTCAGACACCTTCGCATCGCATCTTGTAAT
TTATCTgatatttttttagtatttttaatgaaaaatatagGTAAAGAGGT
AAAAAAGACATGAAATCAGAATTTAGTTCTTTTTTTAGTTCCCATATTAG
CTAGAGCTTACTTTACAGAGGCATATTTAACCTAATTAGAGAACTCGCTT
CTAAAAAGAGCACCGAGATGAAAAAAGCGCGCGGAAGTTAATGGAATTAA
AGATGAACTCAAACTAAACAAAAAATCGTTGATCCCATGCAACAAACTAC
TTCGAGCTGTCGGTGGGTTTACATTATGTTGTTCTGCTCATattctagcg
aaaaaagtttcttatagaggctgcTTAATACTCGGTAGATCGGTAGACTC
GGTAGACTCTTTCCCAGAAAATGCCGCTTTTCGCCGAACAACTTTTTTTA
GCTGGTGAGTGCTTATGATGAAGAATTTATAAAGATACTCATAGATTAGA
TTTATCATAGCCTGTATCAAACCaataacaaatattttcatttattgaGA
TGGCGATATTCAAAATAATATCCGTGTTACAGGCTAGCTTGATCGTTCAA
ATTTTGAGtttcacagaaaatcaaatGACATTTGAAATATTGGACAGGTC
ATTCCTCAGAGACCTGGGCATTACAGTTATTGAGGACATAATGAAGATCC
NGTGCTCTGAGTCGGATTTTCTTCCTTGCTTTGGAAAGTATTGCTTTGTC
TGCATTTTTAGCAATCAAAGAGTTTTTATGCTCAaacaaatcttttaatt
tttggtcATTATGCCATGGAGGGGTTGTCACAGGATTAACAAGTTTAGGT
ATTTCATTCTCAGCTGCTTGATTTATGGATTCGACGATATGCTGATGCGT
AGTACTGTTTGTTGCATCATCCAGTGGTTTGGAGTTAAGATTGGTTATTG
TAGATTGCAAAAAGTTAAGTTGAAGATTTTCGTCGTTATTAAAAGTAGCT
AGATCAAGatttttagctttctttttgACAGTTCTTTTACGGTATCTGGC
TTTTTTTGTAAGTGGAGTGTTCATGGTTGCAATTACTAATCTATGATCAC
TATCGAAATCAAAGCTTCTGTATACTCTACAGTTCAAGCAGTATTGTCGT
AGCCAACTGTCAGTAAGTATGAAGTCATAAACTTTTTCGGTAACACCATC
TGCAGAGTACCACGTAACACGGCGACATCGTTTATGATGGAACCAAGTAT
TTAAGACTGATAAGCGACATGTATCAAATAGTTCATGAAAACGTTCACCA
TTATTATTAACTTCAAGATTGTTG Run BLAST on NCBI protein sequence of TCONS_00073109-protein >TCONS_00073109-protein ID=TCONS_00073109-protein|Name=TCONS_00073109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
NNLEVNNNGERFHELFDTCRLSVLNTWFHHKRCRRVTWYSADGVTEKVYD
FILTDSWLRQYCLNCRVYRSFDFDSDHRLVIATMNTPLTKKARYRKRTVK
KKAKNLDLATFNNDENLQLNFLQSTITNLNSKPLDDATNSTTHQHIVESI
NQAAENEIPKLVNPVTTPPWHNDQKLKDLFEHKNSLIAKNADKAILSKAR
KKIRLRAXDLHYVLNNCNAQVSEE Run BLAST on NCBI transcript from alignment at scaffold_86:197356..199279 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073109 ID=TCONS_00073109|Name=TCONS_00073109|organism=Clytia hemisphaerica|type=transcript|length=1924bp|location=Sequence derived from alignment at scaffold_86:197356..199279 (Clytia hemisphaerica)
CAACAATCTTGAAGTTAATAATAATGGTGAACGTTTTCATGAACTATTTG
ATACATGTCGCTTATCAGTCTTAAATACTTGGTTCCATCATAAACGATGT
CGCCGTGTTACGTGGTACTCTGCAGATGGTGTTACCGAAAAAGTTTATGA
CTTCATACTTACTGACAGTTGGCTACGACAATACTGCTTGAACTGTAGAG
TATACAGAAGCTTTGATTTCGATAGTGATCATAGATTAGTAATTGCAACC
ATGAACACTCCACTTACAAAAAAAGCCAGATACCGTAAAAGAACTGTcaa
aaagaaagctaaaaatCTTGATCTAGCTACTTTTAATAACGACGAAAATC
TTCAACTTAACTTTTTGCAATCTACAATAACCAATCTTAACTCCAAACCA
CTGGATGATGCAACAAACAGTACTACGCATCAGCATATCGTCGAATCCAT
AAATCAAGCAGCTGAGAATGAAATACCTAAACTTGTTAATCCTGTGACAA
CCCCTCCATGGCATAATgaccaaaaattaaaagatttgttTGAGCATAAA
AACTCTTTGATTGCTAAAAATGCAGACAAAGCAATACTTTCCAAAGCAAG
GAAGAAAATCCGACTCAGAGCACNGGATCTTCATTATGTCCTCAATAACT
GTAATGCCCAGGTCTCTGAGGAATGACCTGTCCAATATTTCAAATGTCat
ttgattttctgtgaaaCTCAAAATTTGAACGATCAAGCTAGCCTGTAACA
CGGATATTATTTTGAATATCGCCATCtcaataaatgaaaatatttgttat
tGGTTTGATACAGGCTATGATAAATCTAATCTATGAGTATCTTTATAAAT
TCTTCATCATAAGCACTCACCAGCTAAAAAAAGTTGTTCGGCGAAAAGCG
GCATTTTCTGGGAAAGAGTCTACCGAGTCTACCGATCTACCGAGTATTAA
gcagcctctataagaaacttttttcgctagaatATGAGCAGAACAACATA
ATGTAAACCCACCGACAGCTCGAAGTAGTTTGTTGCATGGGATCAACGAT
TTTTTGTTTAGTTTGAGTTCATCTTTAATTCCATTAACTTCCGCGCGCTT
TTTTCATCTCGGTGCTCTTTTTAGAAGCGAGTTCTCTAATTAGGTTAAAT
ATGCCTCTGTAAAGTAAGCTCTAGCTAATATGGGAACTAAAAAAAGAACT
AAATTCTGATTTCATGTCTTTTTTACCTCTTTACctatatttttcattaa
aaatactaaaaaaatatcAGATAAATTACAAGATGCGATGCGAAGGTGTC
TGAATACCATACAGTATTTCAAAAAGCTGCGCGAAAATAAAAGGTGCGAA
AATTAGAGGCATGCAAAAATAAATGATATTACGGTATCATTTAAGAtaat
gacatcaatttttgtgcattttaaagtgaaattttcaagttctagaaaat
ataaagttttgataCTTGAAAATGAATCCTTCAAAAAAATAACTGATTTT
GATATAATGTATCtatatgaaaattgaattagaacTAACAGACTGAAAAT
CTGAGAGATGGACTTCTcgaaaattcaaattgaaaaaactagttttacaa
agaataaaaacaaCTCTGTTTGATAAGATGTAGCTATAAAAATAACTCTT
TCTGATATAATGCATCAGAGATTTAGAAAAGGGAAACTAAGACgtctttt
caacttttgtccacGAGTTCCATCAAATCTAATTGTTTCTTTTTGAGTGC
CTttgaaatcatcaagagaatcgGGAAACTCGGGAAACTGGGTGCTGGGg
taaaaaactgaataatttgaaaattttgaaatattaaatttggaaaatat
acagTCCCAAGAGCCTCCATCAAAACAGCTAGGTACCCCAAATGAATAGG
TAACCTCAAAGAATTGCAAAATAT Coding sequence (CDS) from alignment at scaffold_86:197356..199279 >TCONS_00073109 ID=TCONS_00073109|Name=TCONS_00073109|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_86:197356..199279 (Clytia hemisphaerica)
AACAATCTTGAAGTTAATAATAATGGTGAACGTTTTCATGAACTATTTGA
TACATGTCGCTTATCAGTCTTAAATACTTGGTTCCATCATAAACGATGTC
GCCGTGTTACGTGGTACTCTGCAGATGGTGTTACCGAAAAAGTTTATGAC
TTCATACTTACTGACAGTTGGCTACGACAATACTGCTTGAACTGTAGAGT
ATACAGAAGCTTTGATTTCGATAGTGATCATAGATTAGTAATTGCAACCA
TGAACACTCCACTTACAAAAAAAGCCAGATACCGTAAAAGAACTGTcaaa
aagaaagctaaaaatCTTGATCTAGCTACTTTTAATAACGACGAAAATCT
TCAACTTAACTTTTTGCAATCTACAATAACCAATCTTAACTCCAAACCAC
TGGATGATGCAACAAACAGTACTACGCATCAGCATATCGTCGAATCCATA
AATCAAGCAGCTGAGAATGAAATACCTAAACTTGTTAATCCTGTGACAAC
CCCTCCATGGCATAATgaccaaaaattaaaagatttgttTGAGCATAAAA
ACTCTTTGATTGCTAAAAATGCAGACAAAGCAATACTTTCCAAAGCAAGG
AAGAAAATCCGACTCAGAGCACNGGATCTTCATTATGTCCTCAATAACTG
TAATGCCCAGGTCTCTGAGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073109-exon-scaffold_86-1491911889:197356..199279 | TCONS_00073109-exon-scaffold_86-1491911889:197356..199279 | Clytia hemisphaerica | exon |
| TCONS_00073109-exon-scaffold_86-1510915933:197356..199279 | TCONS_00073109-exon-scaffold_86-1510915933:197356..199279 | Clytia hemisphaerica | exon |
| TCONS_00073109-exon-scaffold_86-1575043694:197356..199279 | TCONS_00073109-exon-scaffold_86-1575043694:197356..199279 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:197356..199279 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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