TCONS_00073103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073103
Unique NameTCONS_00073103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073103 ID=TCONS_00073103|Name=TCONS_00073103|organism=Clytia hemisphaerica|type=transcript|length=547bp
CAAATTTATGTGCATTAACAAAAACGTGCccgggaaaatttgaaatttcg
tttTTGTTAGTTGATAGTAAACCGAGTTTACTTGTACTAAGCcagatatt
cagtcacaacttaccatcagattttactaagtgactgaatcaatctggct
tagatttctaAGCTAGGTAAAGTTATTCGGTTCTTTGAAAGTAGTTTAAA
ATTTCAggttattttttccaccggaaaGACGATTTTTAGctaatttttca
gtggggcggGGGGCTCCACCGGATCTCTGACACGAGGGTATTCTCCAGAG
GGTTTCCAGCATGTTCTCGCCCTCGCCAATGGATGTGTATCATTATGATA
ATACGACGttggaaaatgtggaaaatacacGTTTCACCTGGATATGATTC
CAATTGTGttcccataaaaaatgaaaatggctgaaatgaaaaagaaaaag
aagaaacagcgAGAGAAGAATTGTTGTAATCCATCCATTCTTGACCGCTG
GAGATAACTAAAAATAAGCATGGAGTGGCAGGATCGGGATTCTGAAA
Run BLAST on NCBI

protein sequence of TCONS_00073103-protein

>TCONS_00073103-protein ID=TCONS_00073103-protein|Name=TCONS_00073103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
FQNPDPATPCLFLVISSGQEWMDYNNSSLAVSSFSFSFQPFSFFMGTQLE
SYPGETCIFHIFQRRIIIMIHIHWRGREHAGNPLENTLVSEIRWSPPPH
Run BLAST on NCBI

transcript from alignment at scaffold_86:151616..152162

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073103 ID=TCONS_00073103|Name=TCONS_00073103|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_86:151616..152162 (Clytia hemisphaerica)
TTTCAGAATCCCGATCCTGCCACTCCATGCTTATTTTTAGTTATCTCCAG CGGTCAAGAATGGATGGATTACAACAATTCTTCTCTcgctgtttcttctt tttctttttcatttcagccattttcattttttatgggaaCACAATTGGAA TCATATCCAGGTGAAACgtgtattttccacattttccaaCGTCGTATTAT CATAATGATACACATCCATTGGCGAGGGCGAGAACATGCTGGAAACCCTC TGGAGAATACCCTCGTGTCAGAGATCCGGTGGAGCCCCccgccccactga aaaattagCTAAAAATCGTCtttccggtggaaaaaataaccTGAAATTTT AAACTACTTTCAAAGAACCGAATAACTTTACCTAGCTtagaaatctaagc cagattgattcagtcacttagtaaaatctgatggtaagttgtgactgaat atctgGCTTAGTACAAGTAAACTCGGTTTACTATCAACTAACAAaaacga aatttcaaattttcccggGCACGTTTTTGTTAATGCACATAAATTTG

Coding sequence (CDS) from alignment at scaffold_86:151616..152162

>TCONS_00073103 ID=TCONS_00073103|Name=TCONS_00073103|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_86:151616..152162 (Clytia hemisphaerica)
TTTCAGAATCCCGATCCTGCCACTCCATGCTTATTTTTAGTTATCTCCAG
CGGTCAAGAATGGATGGATTACAACAATTCTTCTCTcgctgtttcttctt
tttctttttcatttcagccattttcattttttatgggaaCACAATTGGAA
TCATATCCAGGTGAAACgtgtattttccacattttccaaCGTCGTATTAT
CATAATGATACACATCCATTGGCGAGGGCGAGAACATGCTGGAAACCCTC
TGGAGAATACCCTCGTGTCAGAGATCCGGTGGAGCCCCccgccccactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045320XLOC_045320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073103-exon-scaffold_86-1491911889:151616..152162TCONS_00073103-exon-scaffold_86-1491911889:151616..152162Clytia hemisphaericaexon
TCONS_00073103-exon-scaffold_86-1510915933:151616..152162TCONS_00073103-exon-scaffold_86-1510915933:151616..152162Clytia hemisphaericaexon
TCONS_00073103-exon-scaffold_86-1575043694:151616..152162TCONS_00073103-exon-scaffold_86-1575043694:151616..152162Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073103-proteinTCONS_00073103-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:151616..152162 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.58368 1.43299 1.18845 2.4417 2.68944 1.2304 1.48442 1.26336 1.50367 2.5199 2.0205 1.3282 1.95463 1.37743 1.19204 1.59905 0.709163 1.85755 1.45052 2.80222 1.01485 2.97005 0.601747 0.984735 1.57773 0.704043 2.87852 2.30403 2.33003 2.01784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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