TCONS_00073098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073098
Unique NameTCONS_00073098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073098 ID=TCONS_00073098|Name=TCONS_00073098|organism=Clytia hemisphaerica|type=transcript|length=820bp
CGAGCATtaataaagaatttaaaatgaacAACATAAAATGAAGACCAATC
TAATCACATTCTAAAATATTGGGGAAATGAGCAATATATGAGCCCATACA
TACACATTGTTCCATGATTGTATCAATGTCTATGActtgtaaaatttttg
attgcTCAACATGAGTGATTAAGTTCATTGCTAATTCATCAGGCCTTAAA
CATGTGTTAAACTGTGTTAAACTTGTAGAAGGCAAAATATTATAGAAGTA
ACCAAAAGCAACATAATATTCATCATCATCAGTATTAAAACAAGCAAATC
TTTCAATATTAAAATACTGTTTTGTGGACAAGCATACAGTTGTGCTGTGG
CGTTTGATTTCTCTGGTTGATCTTGTTGATCGAATAGTAAACCCATGACA
CTTAATGGATGAAAACATTGATACAGATTCGATAACTGCAGAAGGATGAA
GAGCGATGAATAGGTCAAGCTCTAGGGGTGAAGGAGTGAATTTTCTAAAT
GATCCAAGACCAGTAATGTCAGGAGTTATAACAAATTTTGCCCCTTGGTA
CACATTATGACaacttttgatgaatttttcttctttagagCCTCCTTGAA
TTGTTTCTTCACACAAAACTGGCAAAAGATTGGCAGCAGAAACAGCACTG
GCCAACTGAAAGCAAATGTTCTGAGTACCGTGAATAAGGCTCAGGATATA
ACCATTTTTGTCTTCGTAgtaaaacaaactatatacatACAGTGGTCCAA
GTTCTTTAACATTTTGTGGAAGGTGTAAAAGAGAGTGAATGTTCATGGTT
TGATAACGTAGTGGGTAGAT
Run BLAST on NCBI

protein sequence of TCONS_00073098-protein

>TCONS_00073098-protein ID=TCONS_00073098-protein|Name=TCONS_00073098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
IYPLRYQTMNIHSLLHLPQNVKELGPLYVYSLFYYEDKNGYILSLIHGTQ
NICFQLASAVSAANLLPVLCEETIQGGSKEEKFIKSCHNVYQGAKFVITP
DITGLGSFRKFTPSPLELDLFIALHPSAVIESVSMFSSIKCHGFTIRSTR
STREIKRHSTTVCLSTKQYFNIERFACFNTDDDEYYVAFGYFYNILPSTS
LTQFNTCLRPDELAMNLITHVEQSKILQVIDIDTIMEQCVCMGSYIAHFP
NILECD
Run BLAST on NCBI

transcript from alignment at scaffold_86:109140..109959

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073098 ID=TCONS_00073098|Name=TCONS_00073098|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at scaffold_86:109140..109959 (Clytia hemisphaerica)
ATCTACCCACTACGTTATCAAACCATGAACATTCACTCTCTTTTACACCT
TCCACAAAATGTTAAAGAACTTGGACCACTGTatgtatatagtttgtttt
acTACGAAGACAAAAATGGTTATATCCTGAGCCTTATTCACGGTACTCAG
AACATTTGCTTTCAGTTGGCCAGTGCTGTTTCTGCTGCCAATCTTTTGCC
AGTTTTGTGTGAAGAAACAATTCAAGGAGGctctaaagaagaaaaattca
tcaaaagttGTCATAATGTGTACCAAGGGGCAAAATTTGTTATAACTCCT
GACATTACTGGTCTTGGATCATTTAGAAAATTCACTCCTTCACCCCTAGA
GCTTGACCTATTCATCGCTCTTCATCCTTCTGCAGTTATCGAATCTGTAT
CAATGTTTTCATCCATTAAGTGTCATGGGTTTACTATTCGATCAACAAGA
TCAACCAGAGAAATCAAACGCCACAGCACAACTGTATGCTTGTCCACAAA
ACAGTATTTTAATATTGAAAGATTTGCTTGTTTTAATACTGATGATGATG
AATATTATGTTGCTTTTGGTTACTTCTATAATATTTTGCCTTCTACAAGT
TTAACACAGTTTAACACATGTTTAAGGCCTGATGAATTAGCAATGAACTT
AATCACTCATGTTGAgcaatcaaaaattttacaagTCATAGACATTGATA
CAATCATGGAACAATGTGTATGTATGGGCTCATATATTGCTCATTTCCCC
AATATTTTAGAATGTGATTAGATTGGTCTTCATTTTATGTTgttcatttt
aaattctttattaATGCTCG

Coding sequence (CDS) from alignment at scaffold_86:109140..109959

>TCONS_00073098 ID=TCONS_00073098|Name=TCONS_00073098|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_86:109140..109959 (Clytia hemisphaerica)
ATCTACCCACTACGTTATCAAACCATGAACATTCACTCTCTTTTACACCT
TCCACAAAATGTTAAAGAACTTGGACCACTGTatgtatatagtttgtttt
acTACGAAGACAAAAATGGTTATATCCTGAGCCTTATTCACGGTACTCAG
AACATTTGCTTTCAGTTGGCCAGTGCTGTTTCTGCTGCCAATCTTTTGCC
AGTTTTGTGTGAAGAAACAATTCAAGGAGGctctaaagaagaaaaattca
tcaaaagttGTCATAATGTGTACCAAGGGGCAAAATTTGTTATAACTCCT
GACATTACTGGTCTTGGATCATTTAGAAAATTCACTCCTTCACCCCTAGA
GCTTGACCTATTCATCGCTCTTCATCCTTCTGCAGTTATCGAATCTGTAT
CAATGTTTTCATCCATTAAGTGTCATGGGTTTACTATTCGATCAACAAGA
TCAACCAGAGAAATCAAACGCCACAGCACAACTGTATGCTTGTCCACAAA
ACAGTATTTTAATATTGAAAGATTTGCTTGTTTTAATACTGATGATGATG
AATATTATGTTGCTTTTGGTTACTTCTATAATATTTTGCCTTCTACAAGT
TTAACACAGTTTAACACATGTTTAAGGCCTGATGAATTAGCAATGAACTT
AATCACTCATGTTGAgcaatcaaaaattttacaagTCATAGACATTGATA
CAATCATGGAACAATGTGTATGTATGGGCTCATATATTGCTCATTTCCCC
AATATTTTAGAATGTGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045315XLOC_045315Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073098-exon-scaffold_86-1491911889:109140..109959TCONS_00073098-exon-scaffold_86-1491911889:109140..109959Clytia hemisphaericaexon
TCONS_00073098-exon-scaffold_86-1510915933:109140..109959TCONS_00073098-exon-scaffold_86-1510915933:109140..109959Clytia hemisphaericaexon
TCONS_00073098-exon-scaffold_86-1575043694:109140..109959TCONS_00073098-exon-scaffold_86-1575043694:109140..109959Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073098-proteinTCONS_00073098-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:109140..109959 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.058065	0	0	0.128641	0.078304	0.0618768	0.373259	0.209664	0.391442	0.30304	1.11773	0.193355	0.193086	0.200522	0.0329713	0.212299	0	0.0893551	0	0	0	0	0	0	2.36899	2.22555	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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