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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073097 ID=TCONS_00073097|Name=TCONS_00073097|organism=Clytia hemisphaerica|type=transcript|length=2269bp CTTGGCAGGGCGACCTCTTCTCGTGTATTGGTCATCATTAAATGTTAATA ATTTCAAAGAACGAGAAGAGGGCATACGGAGGACGTGTGCAGCATAGTGA TGTTGCTGTGATTTAATAAAATAGCTAACATCAGAGGTTCCACAGATCCT GTGAAGCTGCACattgtttattgaaaatctgtAATCATTTTGTTTCTCAT TCACAAATCTGAAACCACCACGCACCATTCGACGCAGAAATCTTCGAAAC GCCACGTCAAGTCGATCAAACTGTTCTTGATTAAGGTTCCAATTCTGACA GGCATACACAAGACGACTTcgaacaaaacaattcaaaaacaaaactctCG TTTTCAGCTTTAAATGAAAGTTTTGTAAACGATTTgacatttgtaaaaat tttgcaGATGCTAGTTGAATACGGTGAGTGATCTCCTTTTCACCAGTATT AGGCTGATTCGAATTGAGATAAGCACCAAGATGTTTAAAATCTGACACGT TTGACAGTTGACTTTCACCGAGATCAATAATTGAGGATGGGTAGGGTATT TCATCTGGATGGTTAAGCATCATCGTTTCGGTTTTTTGAGAATTAATGGA TAAACCAAATTTTGTAAAGACTTCATTAAGCAGAACAGTAGCGCTCTGGA GACCAGTTTTTGATTGTAAAAATTAAACTAAGTCATCAGCATAGCCACAC CAAGGTAACAACGATGTTCCTGATGAACTCAAGCCTTTCTCGCGCATTAT CACCCTTTCATTTCTTGAGATTGAATGACTATTTATACGATACTTGTGGA CAAAGAACTGGATTAATGAATCATTACGGCTTTTCTCGATCATCAGGCGC ATGACAAAGTCTATGTACAGATTTAAGAGAAAAGGGCTTTCTGGGCCACC CTGACGAACACCGGATGTGGTTGCGAAAACTTTTCCCTCGTATAATAAAG ATGTATGGCGAtacaatttttcaagaattttgagcAATATTGGAGATTGA CTGTTGCGAAATCGTAAGCTTATTGAATCAAATAACCATTTACGTGGGAT ATGATCGAACGCAGCAGACAGGTCAACGAATAATAGGAATACAAGCTGTT TTTTACGGTGGCTGATTTGATGTACCCTTTTAACGGTATAGATCCCGTCT GTCGTACCACGATTTGAACGAAATCCATTTTGCTCGTCTGAAAGCTGTTT CCCATACCATTCACGAAGTCTGTTGAGAATGATATTAACGACAAGTTTGC AGACAGTGGACCCGATACTGAGTCCCCTGTATTTTGAGGGATCCTTCTTT GATCCTTTGCCCTTCCATAATGTTCTGAGAAGAGATTGACCCCAAGAGAT AGGCAGATCATGCCCAGACCACAAGTTATTGGTGATTCTGTGGATCACTT CAAGCAAAATAGGGTGAATGCATCGTTTCAGTAGCTCTGGCTCAATATCA TTACTGgctttgttgtttttcaatttttgtataTGAGCGTGTATTTCGTC GATGGAGGGAGGAGTGTCATTGATATCAGTAAATTCTGAAATGTCTTGTA GATCCTTAACAAATAACGGAATATTTTCGATCATTTCATCAGGTGTGAAA TCAATGGAGGGATCCTCTGGGTTGAAGTGTGACTTGAAATGGTCATAGAG CTTATCTGTTGGACACGAGCTATGTGTATGTCTGAGTGTAGATTCCTGTC TTTTAGCTTTAGTAAAGAGTTTCTCTATTTCCTTGTTAATCATATATGTG TTCATTGTTTCAGCTTCATGTTTGAAGTGTTGGTCTTTAAGATCGCGAAC ACGATATCTGATCTTTTTACGTATACGTTTCAGTTCTTCTGGACTTGAAG AGCAAGATACTAGTTCTGATTTGGTTACAAATAATTGCTTCAGTTTCTCG TCAGATCTCCAGGGAGGAGATGAGCTATCAACAATGACGGTGGGGAAAAC ATTCTCAGCACTTTCCCGCAATGCATTTATAATAGAGTCATTGAGAAAGT TATTGGATTGAGATTGAGTTATGTCATCTGCTTCAAGTTTTCCTGCGACA TTATTAGGAAACCGGTCGGTCATCTCTTGAGTAAACGCTGCAAAGTTTAT TTTCNATTAGAAAACCGGTCGGTCATCTCTTGAGTAATCGCTGCAAAGTT TATTTTCTGTTTACGAGTGCGCTTTTGATGCTTTTTGAACCGAGCTTTCT TTGATGAGGGTGTGGATAGTTTTGCAATTACAAGTCTATGGTCACTATCA AAATCAAACGAATTAAACA Run BLAST on NCBI protein sequence of TCONS_00073097-protein >TCONS_00073097-protein ID=TCONS_00073097-protein|Name=TCONS_00073097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MTDRFPNNVAGKLEADDITQSQSNNFLNDSIINALRESAENVFPTVIVDS SSPPWRSDEKLKQLFVTKSELVSCSSSPEELKRIRKKIRYRVRDLKDQHF KHEAETMNTYMINKEIEKLFTKAKRQESTLRHTHSSCPTDKLYDHFKSHF NPEDPSIDFTPDEMIENIPLFVKDLQDISEFTDINDTPPSIDEIHAHIQK LKNNKASNDIEPELLKRCIHPILLEVIHRITNNLWSGHDLPISWGQSLLR TLWKGKGSKKDPSKYRGLSIGSTVCKLVVNIILNRLREWYGKQLSDEQNG FRSNRGTTDGIYTVKRVHQISHRKKQLVFLLFVDLSAAFDHIPRKWLFDS ISLRFRNSQSPILLKILEKLYRHTSLLYEGKVFATTSGVRQGGPESPFLL NLYIDFVMRLMIEKSRNDSLIQFFVHKYRINSHSISRNERVIMREKGLSS SGTSLLPWCGYADDLV Run BLAST on NCBI transcript from alignment at scaffold_86:87389..89657 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073097 ID=TCONS_00073097|Name=TCONS_00073097|organism=Clytia hemisphaerica|type=transcript|length=2269bp|location=Sequence derived from alignment at scaffold_86:87389..89657 (Clytia hemisphaerica) TGTTTAATTCGTTTGATTTTGATAGTGACCATAGACTTGTAATTGCAAAA
CTATCCACACCCTCATCAAAGAAAGCTCGGTTCAAAAAGCATCAAAAGCG
CACTCGTAAACAGAAAATAAACTTTGCAGCGATTACTCAAGAGATGACCG
ACCGGTTTTCTAATNGAAAATAAACTTTGCAGCGTTTACTCAAGAGATGA
CCGACCGGTTTCCTAATAATGTCGCAGGAAAACTTGAAGCAGATGACATA
ACTCAATCTCAATCCAATAACTTTCTCAATGACTCTATTATAAATGCATT
GCGGGAAAGTGCTGAGAATGTTTTCCCCACCGTCATTGTTGATAGCTCAT
CTCCTCCCTGGAGATCTGACGAGAAACTGAAGCAATTATTTGTAACCAAA
TCAGAACTAGTATCTTGCTCTTCAAGTCCAGAAGAACTGAAACGTATACG
TAAAAAGATCAGATATCGTGTTCGCGATCTTAAAGACCAACACTTCAAAC
ATGAAGCTGAAACAATGAACACATATATGATTAACAAGGAAATAGAGAAA
CTCTTTACTAAAGCTAAAAGACAGGAATCTACACTCAGACATACACATAG
CTCGTGTCCAACAGATAAGCTCTATGACCATTTCAAGTCACACTTCAACC
CAGAGGATCCCTCCATTGATTTCACACCTGATGAAATGATCGAAAATATT
CCGTTATTTGTTAAGGATCTACAAGACATTTCAGAATTTACTGATATCAA
TGACACTCCTCCCTCCATCGACGAAATACACGCTCAtatacaaaaattga
aaaacaacaaagcCAGTAATGATATTGAGCCAGAGCTACTGAAACGATGC
ATTCACCCTATTTTGCTTGAAGTGATCCACAGAATCACCAATAACTTGTG
GTCTGGGCATGATCTGCCTATCTCTTGGGGTCAATCTCTTCTCAGAACAT
TATGGAAGGGCAAAGGATCAAAGAAGGATCCCTCAAAATACAGGGGACTC
AGTATCGGGTCCACTGTCTGCAAACTTGTCGTTAATATCATTCTCAACAG
ACTTCGTGAATGGTATGGGAAACAGCTTTCAGACGAGCAAAATGGATTTC
GTTCAAATCGTGGTACGACAGACGGGATCTATACCGTTAAAAGGGTACAT
CAAATCAGCCACCGTAAAAAACAGCTTGTATTCCTATTATTCGTTGACCT
GTCTGCTGCGTTCGATCATATCCCACGTAAATGGTTATTTGATTCAATAA
GCTTACGATTTCGCAACAGTCAATCTCCAATATTgctcaaaattcttgaa
aaattgtaTCGCCATACATCTTTATTATACGAGGGAAAAGTTTTCGCAAC
CACATCCGGTGTTCGTCAGGGTGGCCCAGAAAGCCCTTTTCTCTTAAATC
TGTACATAGACTTTGTCATGCGCCTGATGATCGAGAAAAGCCGTAATGAT
TCATTAATCCAGTTCTTTGTCCACAAGTATCGTATAAATAGTCATTCAAT
CTCAAGAAATGAAAGGGTGATAATGCGCGAGAAAGGCTTGAGTTCATCAG
GAACATCGTTGTTACCTTGGTGTGGCTATGCTGATGACTTAGTTTAATTT
TTACAATCAAAAACTGGTCTCCAGAGCGCTACTGTTCTGCTTAATGAAGT
CTTTACAAAATTTGGTTTATCCATTAATTCTCAAAAAACCGAAACGATGA
TGCTTAACCATCCAGATGAAATACCCTACCCATCCTCAATTATTGATCTC
GGTGAAAGTCAACTGTCAAACGTGTCAGATTTTAAACATCTTGGTGCTTA
TCTCAATTCGAATCAGCCTAATACTGGTGAAAAGGAGATCACTCACCGTA
TTCAACTAGCATCtgcaaaatttttacaaatgtcAAATCGTTTACAAAAC
TTTCATTTAAAGCTGAAAACGagagttttgtttttgaattgttttgttcg
AAGTCGTCTTGTGTATGCCTGTCAGAATTGGAACCTTAATCAAGAACAGT
TTGATCGACTTGACGTGGCGTTTCGAAGATTTCTGCGTCGAATGGTGCGT
GGTGGTTTCAGATTTGTGAATGAGAAACAAAATGATTacagattttcaat
aaacaatGTGCAGCTTCACAGGATCTGTGGAACCTCTGATGTTAGCTATT
TTATTAAATCACAGCAACATCACTATGCTGCACACGTCCTCCGTATGCCC
TCTTCTCGTTCTTTGAAATTATTAACATTTAATGATGACCAATACACGAG
AAGAGGTCGCCCTGCCAAG Coding sequence (CDS) from alignment at scaffold_86:87389..89657 >TCONS_00073097 ID=TCONS_00073097|Name=TCONS_00073097|organism=Clytia hemisphaerica|type=CDS|length=1401bp|location=Sequence derived from alignment at scaffold_86:87389..89657 (Clytia hemisphaerica) ATGACCGACCGGTTTCCTAATAATGTCGCAGGAAAACTTGAAGCAGATGA CATAACTCAATCTCAATCCAATAACTTTCTCAATGACTCTATTATAAATG CATTGCGGGAAAGTGCTGAGAATGTTTTCCCCACCGTCATTGTTGATAGC TCATCTCCTCCCTGGAGATCTGACGAGAAACTGAAGCAATTATTTGTAAC CAAATCAGAACTAGTATCTTGCTCTTCAAGTCCAGAAGAACTGAAACGTA TACGTAAAAAGATCAGATATCGTGTTCGCGATCTTAAAGACCAACACTTC AAACATGAAGCTGAAACAATGAACACATATATGATTAACAAGGAAATAGA GAAACTCTTTACTAAAGCTAAAAGACAGGAATCTACACTCAGACATACAC ATAGCTCGTGTCCAACAGATAAGCTCTATGACCATTTCAAGTCACACTTC AACCCAGAGGATCCCTCCATTGATTTCACACCTGATGAAATGATCGAAAA TATTCCGTTATTTGTTAAGGATCTACAAGACATTTCAGAATTTACTGATA TCAATGACACTCCTCCCTCCATCGACGAAATACACGCTCAtatacaaaaa ttgaaaaacaacaaagcCAGTAATGATATTGAGCCAGAGCTACTGAAACG ATGCATTCACCCTATTTTGCTTGAAGTGATCCACAGAATCACCAATAACT TGTGGTCTGGGCATGATCTGCCTATCTCTTGGGGTCAATCTCTTCTCAGA ACATTATGGAAGGGCAAAGGATCAAAGAAGGATCCCTCAAAATACAGGGG ACTCAGTATCGGGTCCACTGTCTGCAAACTTGTCGTTAATATCATTCTCA ACAGACTTCGTGAATGGTATGGGAAACAGCTTTCAGACGAGCAAAATGGA TTTCGTTCAAATCGTGGTACGACAGACGGGATCTATACCGTTAAAAGGGT ACATCAAATCAGCCACCGTAAAAAACAGCTTGTATTCCTATTATTCGTTG ACCTGTCTGCTGCGTTCGATCATATCCCACGTAAATGGTTATTTGATTCA ATAAGCTTACGATTTCGCAACAGTCAATCTCCAATATTgctcaaaattct tgaaaaattgtaTCGCCATACATCTTTATTATACGAGGGAAAAGTTTTCG CAACCACATCCGGTGTTCGTCAGGGTGGCCCAGAAAGCCCTTTTCTCTTA AATCTGTACATAGACTTTGTCATGCGCCTGATGATCGAGAAAAGCCGTAA TGATTCATTAATCCAGTTCTTTGTCCACAAGTATCGTATAAATAGTCATT CAATCTCAAGAAATGAAAGGGTGATAATGCGCGAGAAAGGCTTGAGTTCA TCAGGAACATCGTTGTTACCTTGGTGTGGCTATGCTGATGACTTAGTTTA A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073097-exon-scaffold_86-1491911889:87389..89657 | TCONS_00073097-exon-scaffold_86-1491911889:87389..89657 | Clytia hemisphaerica | exon |
TCONS_00073097-exon-scaffold_86-1510915933:87389..89657 | TCONS_00073097-exon-scaffold_86-1510915933:87389..89657 | Clytia hemisphaerica | exon |
TCONS_00073097-exon-scaffold_86-1575043694:87389..89657 | TCONS_00073097-exon-scaffold_86-1575043694:87389..89657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:87389..89657 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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