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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073097 ID=TCONS_00073097|Name=TCONS_00073097|organism=Clytia hemisphaerica|type=transcript|length=2269bp
CTTGGCAGGGCGACCTCTTCTCGTGTATTGGTCATCATTAAATGTTAATA
ATTTCAAAGAACGAGAAGAGGGCATACGGAGGACGTGTGCAGCATAGTGA
TGTTGCTGTGATTTAATAAAATAGCTAACATCAGAGGTTCCACAGATCCT
GTGAAGCTGCACattgtttattgaaaatctgtAATCATTTTGTTTCTCAT
TCACAAATCTGAAACCACCACGCACCATTCGACGCAGAAATCTTCGAAAC
GCCACGTCAAGTCGATCAAACTGTTCTTGATTAAGGTTCCAATTCTGACA
GGCATACACAAGACGACTTcgaacaaaacaattcaaaaacaaaactctCG
TTTTCAGCTTTAAATGAAAGTTTTGTAAACGATTTgacatttgtaaaaat
tttgcaGATGCTAGTTGAATACGGTGAGTGATCTCCTTTTCACCAGTATT
AGGCTGATTCGAATTGAGATAAGCACCAAGATGTTTAAAATCTGACACGT
TTGACAGTTGACTTTCACCGAGATCAATAATTGAGGATGGGTAGGGTATT
TCATCTGGATGGTTAAGCATCATCGTTTCGGTTTTTTGAGAATTAATGGA
TAAACCAAATTTTGTAAAGACTTCATTAAGCAGAACAGTAGCGCTCTGGA
GACCAGTTTTTGATTGTAAAAATTAAACTAAGTCATCAGCATAGCCACAC
CAAGGTAACAACGATGTTCCTGATGAACTCAAGCCTTTCTCGCGCATTAT
CACCCTTTCATTTCTTGAGATTGAATGACTATTTATACGATACTTGTGGA
CAAAGAACTGGATTAATGAATCATTACGGCTTTTCTCGATCATCAGGCGC
ATGACAAAGTCTATGTACAGATTTAAGAGAAAAGGGCTTTCTGGGCCACC
CTGACGAACACCGGATGTGGTTGCGAAAACTTTTCCCTCGTATAATAAAG
ATGTATGGCGAtacaatttttcaagaattttgagcAATATTGGAGATTGA
CTGTTGCGAAATCGTAAGCTTATTGAATCAAATAACCATTTACGTGGGAT
ATGATCGAACGCAGCAGACAGGTCAACGAATAATAGGAATACAAGCTGTT
TTTTACGGTGGCTGATTTGATGTACCCTTTTAACGGTATAGATCCCGTCT
GTCGTACCACGATTTGAACGAAATCCATTTTGCTCGTCTGAAAGCTGTTT
CCCATACCATTCACGAAGTCTGTTGAGAATGATATTAACGACAAGTTTGC
AGACAGTGGACCCGATACTGAGTCCCCTGTATTTTGAGGGATCCTTCTTT
GATCCTTTGCCCTTCCATAATGTTCTGAGAAGAGATTGACCCCAAGAGAT
AGGCAGATCATGCCCAGACCACAAGTTATTGGTGATTCTGTGGATCACTT
CAAGCAAAATAGGGTGAATGCATCGTTTCAGTAGCTCTGGCTCAATATCA
TTACTGgctttgttgtttttcaatttttgtataTGAGCGTGTATTTCGTC
GATGGAGGGAGGAGTGTCATTGATATCAGTAAATTCTGAAATGTCTTGTA
GATCCTTAACAAATAACGGAATATTTTCGATCATTTCATCAGGTGTGAAA
TCAATGGAGGGATCCTCTGGGTTGAAGTGTGACTTGAAATGGTCATAGAG
CTTATCTGTTGGACACGAGCTATGTGTATGTCTGAGTGTAGATTCCTGTC
TTTTAGCTTTAGTAAAGAGTTTCTCTATTTCCTTGTTAATCATATATGTG
TTCATTGTTTCAGCTTCATGTTTGAAGTGTTGGTCTTTAAGATCGCGAAC
ACGATATCTGATCTTTTTACGTATACGTTTCAGTTCTTCTGGACTTGAAG
AGCAAGATACTAGTTCTGATTTGGTTACAAATAATTGCTTCAGTTTCTCG
TCAGATCTCCAGGGAGGAGATGAGCTATCAACAATGACGGTGGGGAAAAC
ATTCTCAGCACTTTCCCGCAATGCATTTATAATAGAGTCATTGAGAAAGT
TATTGGATTGAGATTGAGTTATGTCATCTGCTTCAAGTTTTCCTGCGACA
TTATTAGGAAACCGGTCGGTCATCTCTTGAGTAAACGCTGCAAAGTTTAT
TTTCNATTAGAAAACCGGTCGGTCATCTCTTGAGTAATCGCTGCAAAGTT
TATTTTCTGTTTACGAGTGCGCTTTTGATGCTTTTTGAACCGAGCTTTCT
TTGATGAGGGTGTGGATAGTTTTGCAATTACAAGTCTATGGTCACTATCA
AAATCAAACGAATTAAACA Run BLAST on NCBI protein sequence of TCONS_00073097-protein >TCONS_00073097-protein ID=TCONS_00073097-protein|Name=TCONS_00073097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MTDRFPNNVAGKLEADDITQSQSNNFLNDSIINALRESAENVFPTVIVDS
SSPPWRSDEKLKQLFVTKSELVSCSSSPEELKRIRKKIRYRVRDLKDQHF
KHEAETMNTYMINKEIEKLFTKAKRQESTLRHTHSSCPTDKLYDHFKSHF
NPEDPSIDFTPDEMIENIPLFVKDLQDISEFTDINDTPPSIDEIHAHIQK
LKNNKASNDIEPELLKRCIHPILLEVIHRITNNLWSGHDLPISWGQSLLR
TLWKGKGSKKDPSKYRGLSIGSTVCKLVVNIILNRLREWYGKQLSDEQNG
FRSNRGTTDGIYTVKRVHQISHRKKQLVFLLFVDLSAAFDHIPRKWLFDS
ISLRFRNSQSPILLKILEKLYRHTSLLYEGKVFATTSGVRQGGPESPFLL
NLYIDFVMRLMIEKSRNDSLIQFFVHKYRINSHSISRNERVIMREKGLSS
SGTSLLPWCGYADDLV Run BLAST on NCBI transcript from alignment at scaffold_86:87389..89657 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073097 ID=TCONS_00073097|Name=TCONS_00073097|organism=Clytia hemisphaerica|type=transcript|length=2269bp|location=Sequence derived from alignment at scaffold_86:87389..89657 (Clytia hemisphaerica)
TGTTTAATTCGTTTGATTTTGATAGTGACCATAGACTTGTAATTGCAAAA
CTATCCACACCCTCATCAAAGAAAGCTCGGTTCAAAAAGCATCAAAAGCG
CACTCGTAAACAGAAAATAAACTTTGCAGCGATTACTCAAGAGATGACCG
ACCGGTTTTCTAATNGAAAATAAACTTTGCAGCGTTTACTCAAGAGATGA
CCGACCGGTTTCCTAATAATGTCGCAGGAAAACTTGAAGCAGATGACATA
ACTCAATCTCAATCCAATAACTTTCTCAATGACTCTATTATAAATGCATT
GCGGGAAAGTGCTGAGAATGTTTTCCCCACCGTCATTGTTGATAGCTCAT
CTCCTCCCTGGAGATCTGACGAGAAACTGAAGCAATTATTTGTAACCAAA
TCAGAACTAGTATCTTGCTCTTCAAGTCCAGAAGAACTGAAACGTATACG
TAAAAAGATCAGATATCGTGTTCGCGATCTTAAAGACCAACACTTCAAAC
ATGAAGCTGAAACAATGAACACATATATGATTAACAAGGAAATAGAGAAA
CTCTTTACTAAAGCTAAAAGACAGGAATCTACACTCAGACATACACATAG
CTCGTGTCCAACAGATAAGCTCTATGACCATTTCAAGTCACACTTCAACC
CAGAGGATCCCTCCATTGATTTCACACCTGATGAAATGATCGAAAATATT
CCGTTATTTGTTAAGGATCTACAAGACATTTCAGAATTTACTGATATCAA
TGACACTCCTCCCTCCATCGACGAAATACACGCTCAtatacaaaaattga
aaaacaacaaagcCAGTAATGATATTGAGCCAGAGCTACTGAAACGATGC
ATTCACCCTATTTTGCTTGAAGTGATCCACAGAATCACCAATAACTTGTG
GTCTGGGCATGATCTGCCTATCTCTTGGGGTCAATCTCTTCTCAGAACAT
TATGGAAGGGCAAAGGATCAAAGAAGGATCCCTCAAAATACAGGGGACTC
AGTATCGGGTCCACTGTCTGCAAACTTGTCGTTAATATCATTCTCAACAG
ACTTCGTGAATGGTATGGGAAACAGCTTTCAGACGAGCAAAATGGATTTC
GTTCAAATCGTGGTACGACAGACGGGATCTATACCGTTAAAAGGGTACAT
CAAATCAGCCACCGTAAAAAACAGCTTGTATTCCTATTATTCGTTGACCT
GTCTGCTGCGTTCGATCATATCCCACGTAAATGGTTATTTGATTCAATAA
GCTTACGATTTCGCAACAGTCAATCTCCAATATTgctcaaaattcttgaa
aaattgtaTCGCCATACATCTTTATTATACGAGGGAAAAGTTTTCGCAAC
CACATCCGGTGTTCGTCAGGGTGGCCCAGAAAGCCCTTTTCTCTTAAATC
TGTACATAGACTTTGTCATGCGCCTGATGATCGAGAAAAGCCGTAATGAT
TCATTAATCCAGTTCTTTGTCCACAAGTATCGTATAAATAGTCATTCAAT
CTCAAGAAATGAAAGGGTGATAATGCGCGAGAAAGGCTTGAGTTCATCAG
GAACATCGTTGTTACCTTGGTGTGGCTATGCTGATGACTTAGTTTAATTT
TTACAATCAAAAACTGGTCTCCAGAGCGCTACTGTTCTGCTTAATGAAGT
CTTTACAAAATTTGGTTTATCCATTAATTCTCAAAAAACCGAAACGATGA
TGCTTAACCATCCAGATGAAATACCCTACCCATCCTCAATTATTGATCTC
GGTGAAAGTCAACTGTCAAACGTGTCAGATTTTAAACATCTTGGTGCTTA
TCTCAATTCGAATCAGCCTAATACTGGTGAAAAGGAGATCACTCACCGTA
TTCAACTAGCATCtgcaaaatttttacaaatgtcAAATCGTTTACAAAAC
TTTCATTTAAAGCTGAAAACGagagttttgtttttgaattgttttgttcg
AAGTCGTCTTGTGTATGCCTGTCAGAATTGGAACCTTAATCAAGAACAGT
TTGATCGACTTGACGTGGCGTTTCGAAGATTTCTGCGTCGAATGGTGCGT
GGTGGTTTCAGATTTGTGAATGAGAAACAAAATGATTacagattttcaat
aaacaatGTGCAGCTTCACAGGATCTGTGGAACCTCTGATGTTAGCTATT
TTATTAAATCACAGCAACATCACTATGCTGCACACGTCCTCCGTATGCCC
TCTTCTCGTTCTTTGAAATTATTAACATTTAATGATGACCAATACACGAG
AAGAGGTCGCCCTGCCAAG Coding sequence (CDS) from alignment at scaffold_86:87389..89657 >TCONS_00073097 ID=TCONS_00073097|Name=TCONS_00073097|organism=Clytia hemisphaerica|type=CDS|length=1401bp|location=Sequence derived from alignment at scaffold_86:87389..89657 (Clytia hemisphaerica)
ATGACCGACCGGTTTCCTAATAATGTCGCAGGAAAACTTGAAGCAGATGA
CATAACTCAATCTCAATCCAATAACTTTCTCAATGACTCTATTATAAATG
CATTGCGGGAAAGTGCTGAGAATGTTTTCCCCACCGTCATTGTTGATAGC
TCATCTCCTCCCTGGAGATCTGACGAGAAACTGAAGCAATTATTTGTAAC
CAAATCAGAACTAGTATCTTGCTCTTCAAGTCCAGAAGAACTGAAACGTA
TACGTAAAAAGATCAGATATCGTGTTCGCGATCTTAAAGACCAACACTTC
AAACATGAAGCTGAAACAATGAACACATATATGATTAACAAGGAAATAGA
GAAACTCTTTACTAAAGCTAAAAGACAGGAATCTACACTCAGACATACAC
ATAGCTCGTGTCCAACAGATAAGCTCTATGACCATTTCAAGTCACACTTC
AACCCAGAGGATCCCTCCATTGATTTCACACCTGATGAAATGATCGAAAA
TATTCCGTTATTTGTTAAGGATCTACAAGACATTTCAGAATTTACTGATA
TCAATGACACTCCTCCCTCCATCGACGAAATACACGCTCAtatacaaaaa
ttgaaaaacaacaaagcCAGTAATGATATTGAGCCAGAGCTACTGAAACG
ATGCATTCACCCTATTTTGCTTGAAGTGATCCACAGAATCACCAATAACT
TGTGGTCTGGGCATGATCTGCCTATCTCTTGGGGTCAATCTCTTCTCAGA
ACATTATGGAAGGGCAAAGGATCAAAGAAGGATCCCTCAAAATACAGGGG
ACTCAGTATCGGGTCCACTGTCTGCAAACTTGTCGTTAATATCATTCTCA
ACAGACTTCGTGAATGGTATGGGAAACAGCTTTCAGACGAGCAAAATGGA
TTTCGTTCAAATCGTGGTACGACAGACGGGATCTATACCGTTAAAAGGGT
ACATCAAATCAGCCACCGTAAAAAACAGCTTGTATTCCTATTATTCGTTG
ACCTGTCTGCTGCGTTCGATCATATCCCACGTAAATGGTTATTTGATTCA
ATAAGCTTACGATTTCGCAACAGTCAATCTCCAATATTgctcaaaattct
tgaaaaattgtaTCGCCATACATCTTTATTATACGAGGGAAAAGTTTTCG
CAACCACATCCGGTGTTCGTCAGGGTGGCCCAGAAAGCCCTTTTCTCTTA
AATCTGTACATAGACTTTGTCATGCGCCTGATGATCGAGAAAAGCCGTAA
TGATTCATTAATCCAGTTCTTTGTCCACAAGTATCGTATAAATAGTCATT
CAATCTCAAGAAATGAAAGGGTGATAATGCGCGAGAAAGGCTTGAGTTCA
TCAGGAACATCGTTGTTACCTTGGTGTGGCTATGCTGATGACTTAGTTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073097-exon-scaffold_86-1491911889:87389..89657 | TCONS_00073097-exon-scaffold_86-1491911889:87389..89657 | Clytia hemisphaerica | exon |
| TCONS_00073097-exon-scaffold_86-1510915933:87389..89657 | TCONS_00073097-exon-scaffold_86-1510915933:87389..89657 | Clytia hemisphaerica | exon |
| TCONS_00073097-exon-scaffold_86-1575043694:87389..89657 | TCONS_00073097-exon-scaffold_86-1575043694:87389..89657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:87389..89657 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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