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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073087 ID=TCONS_00073087|Name=TCONS_00073087|organism=Clytia hemisphaerica|type=transcript|length=1135bp gtttttaagtctccaaagccttagtatgttcttagaatgttcttaaattt ttgggctcgaagccttatgttcttatatagtttgttcttataaaaaaaaa acgtgtatttgaaaTACGAATGCATACTCACCTCCCGGTAGTAGATATTC CTCATCGTTTAAAGAAATCATTGCAATTTCTTCGTTGTTCCAATTCAAGG AAAAATCTTGAATATCGTCATCTTCAGTCATAATTTGTCTTTGGGACTTA CGTGTAATTTTCATGTTTGTTAAATCCAGAGTCATATATACCCCGTGGAC ATCGTCCCTTAATAAAGCTGGTAATACAGTATGATTGAATCTTTTGATTG GATCATTTAATGCGACTGATTTGTACATCACTCCGTCCTCTTTCGGAAAT ATAATATTTCTAACTTCTTTAACAACCTCAGCTTTACCTCTTTCCAATTT GATAACTCGTATTTCAAGATCCTCAGGTTTAGTTTTTCTGGGGTATAAAA ATATTAAGTTCGAATTTCTAATACATTCGAAATGCTTTACAAATGAATCG GGATAATCAATCGAATATGAATATAAAAATTTACCCGAGTAATCATATTC TAAAATTGCTGAGTTAATGGTATTGTGTTTGTTACCAATCCTTTCAAAAT AGATCTTATGCTTagtaaaatatcataaaaacaaaagaattttccaaCGG TCTGTCTAATTCAATTACCAGTCTTTTTTCTCGCTTTATTTGATGTAGCT CGATGTTTaaaaaatccaaacataaaCTTTGATATAATACGGGTGAAGGG CCGTTAGCTTCATCAACTGTTCGTTGAGAAAAGGCTGAAATGATAAGTCT CTTAATGTTTCCAATGATATTATAGTAGTGATAACTTAGAAATCTAAATT CACTGGCATACCTCAGATTTAAATCAGGAGAGGGTTTAAGATCCATACAC AATTCACTGTTGTTCCGGTTCTTTTCAAACCAGTTAATAATGTGATAACC ATAAAGGTCGTTAGTAAAATATTACCTGTCGCTGGAATAACGTTCGATTG TATGTAGAAGAAAACCAACATCTGGATAAAAACAAAGCTGCTCGTAATTA TAATATCCAACGCAGGAACGAAGTTTAACGGTCAC Run BLAST on NCBI transcript from alignment at scaffold_86:1400086..1405050- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073087 ID=TCONS_00073087|Name=TCONS_00073087|organism=Clytia hemisphaerica|type=transcript|length=4965bp|location=Sequence derived from alignment at scaffold_86:1400086..1405050- (Clytia hemisphaerica) GTTTTTAAGTCTCCAAAGCCTTAGTATGTTCTTAGAATGTTCTTAAATTT
TTGGGCTCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAA
ACGTGTATTTGAAATACGAATGCATACTCACCTCCCGGTAGTAGATATTC
CTCATCGTTTAAAGAAATCATTGCAATTTCTTCGTTGTTCCAATTCAAGG
AAAAATCTTGAATATCGTCATCTTCAGTCATAATTTGTCTTTGGGACTTA
CGTGTAATTTTCATGTTTGTTAAATCCAGAGTCATATATACCCCGTGGAC
ATCGTCCCTTAATAAAGCTGGTAATACAGTATGATTGAATCTTTTGATTG
GATCATTTAATGCGACTGATTTGTACATCACTCCGTCCTCTTTCGGAAAT
ATAATATTTCTAACTTCTTTAACAACCTCAGCTTTACCTCTTTCCAATTT
GATAACTCGTATTTCAAGATCCTCAGGTTTAGTTTTTCTGGGGTATAAAA
ATATTAAGTTCGAATTTCTAATACATTCGAAATGCTTTACAAATGAATCG
GGATAATCAATCGAATATGAATATAAAAATTTACCCGAGTAATCATATTC
TAAAATTGCTGAGTTAATGGTATTGTGTTTGTTACCAATCCTTTCAAAAT
AGATCTTATGCTTAGTAAAATATCATAAAAACAAAAGAATTTTCCAACGG
TCTGTCTAATTCAATTACCAGTCTTTTTTCTCGCTTTATTTGATGTAGCT
CGATGTTTAAAAAATCCAAACATAAACTTTGATATAATACGGGTGAAGGG
CCGTTAGCTTCATCAACTGTTCGTTGAGAAAAGGCTGAAATGATAAGTCT
CTTAATGTTTCCAATGATATTATAGTAGTGATAACTTAGAAATCTAAATT
CACTGGCATACCTCAGATTTAAATCAGGAGAGGGTTTAAGATCCATACAC
AATTCACTGTTGTTCCGGTTCTTTTCAAACCAGTTAATAATGTGATAACC
ATAAAGGTCGTTAGTAAAATATTACCTGTCGCTGGAATAACGTTCGATTG
TATGTAGAAGAAAACCAACATCTGGATAAAAACAAAACTGATCGCATTTA
TAATATCCAACGCAGGAACGAAGTTTAACGGTCACAACGCTTCGAAGAAA
TTTAGAAGAACTTTTATCGAATTCGATAATATGAATACGCACGGTATCGG
TTTTTTTTATCCATGTTTCTTCCTTAGCTAAAAAGTACTGACCGGTGTGG
TAAAATCCCACCTCTTCTTTATCAAATGATACATTGCCGACGAATAGTGG
TTGTATATCATTGTCTTTGAAGTCAGGTGGAATGAACCATGATTTCTTGC
CGTCAATCATTCTTTTTCAATATTTTTGGTTTTAATATTTTTTTGTACCT
GTAAAAGAAGGACATTAAATGTTATAATTCCCATGAAAGTACATGTAATT
TTATCACGAGCATAAAGAAAAATGATGGAATTGTAGAAAATTGTAGTGTC
CTTCAGATTCAAAGCCAAAATACTGATTGCGCAATGGTGGCATATCCAGT
TAGATTCATCTGTAGAAAGAAGTTTATCATTTAAGCCTCCATTTTTTGAA
TAACTGCTAGTCGAAAGCAATAAAAATAGACCATTATTATATCACAGCGA
GGTACAACATGTCACATAACCAGGGGCCTGTTAAATGGAAAATGACAGTT
CATTGCTGAAACGTACTAAAACATCTAAGAACAACCCCCGGGGGGGGGGG
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGGGGGGGGGGGTACTAGGGCAAAATGGGTTAAT
ACAAAAATCTGCCCCTCGTAAGGGTGCCTTTTTTGGAAAATTTGGGGAAA
AAGTGAAAAATTTGATAACATTCTGGAATTTCAGTCCTATTTAGAGTCAC
TTTTTCGCAAATTTAGGCAAAAAGTTTGAATAAGCGAGTCCCACGTAGGG
TCCATTTTTCGAACCTCAGCGGAGCAACCCCCGTCGGTCGACAAGGGTAA
TACACCACCCCGGGTACAACCGAAACTTACGCTCACTGATTTTTGTAAGA
TAATCTGGCAATTCATTCATTGAGTTGTTTGATAAAATAAAAAATTATAA
ATTCTGTAAAATAGTTGTCCTAATTATAAATATGTAATATGGTATAAAAT
AGTTTGATAGAATCTTATAAAATTTCATAAAGGGAAGGATACAAAACTAT
CAATATTAATAATGTTCGCTTCATATTAGGTGATTTTGATGAATTTCCTT
TTTGCTTTTCCTCCATTTTTCCAATGTTTTTCAAATATTGGTGGAAAATG
TATTCAGTAAGCAACTAGTTTTCAATACCCAAATAATTAAATAATGAAGA
CGGAAGATTTGCTTTAAATAATTCATTATAAGTAAACGATGTCAAAACAG
CAAATCTTGACAAATATTTCAAAGATTTATTTTTTTTTTCTTTTCAATAT
CATTGCAAGCCATTTTAAAACATAACGGTCCAAGTCTCGTAGCATTTTGA
AGATTATCTTTACGAAAAGTCATCCCAATTTCTTCATTGTTCCAATTTAC
AGAATAGCAAGGATGTGAATTTTCAGGAGAAATAATTTGGTGAACAACTT
CTGTAGTAGATAAATCAATTGCCATGTAAAATTCAGGGTGAAATACATCC
CTTGTGGTACAGTAAAATGGCATAACAAGGCGATCGAACTTCTTGATAGG
GGCACGCACTCTCAAGTCCCTATCTCTATATTCTACTGGTACTTTCACGC
AGGGAATGAAGTTTTTTGTTTCATTTATTGACAAAAGAACCCCATTCTCC
AGTTTTAAAACTCTTAATTCAAGGTCCTCCAATTCGCCATAACCATTATA
AAGAAATATGTAATTTGAATGTTTAAGATCAACAACATTAAACATCCACG
ATTCAATGTATTCTAAATCATACGAATATAAAAAATTACCAGAATAATCA
CATTCAAGGATCTTTAAGTTCATTATTTCTTCACTANATTCAATGTATTC
CAGATTATACGAATATAAAAAATTACCAGAATAATCACATTCGAGGATCT
TTAGGTTCATTATATCTTCACTGTCTTCAATATAAGACCTTTTAAAGAAA
AATATTTTGTCTTTAGTATATTCCCTTCTCGCAATTACTGATCCACCAAC
CGTATCGAAATCTAAGACCAATCTTTTCTCGTGACAAAGTTGATCTTTTT
GTATCTTGATAAAATCCAGATAGTTGTATCTCTCATCCTGGTTACTCTCA
TAATACGGAGTAAAATAACTGCTTATAAGTAAAGTGGCATTCTCGTGGCC
AAGAAATTTTGCATATTTACAAGTTATAGAGTTAAATAACTGATCATATG
CCAAAGACAGATCTGGAGTGGATGCTTCGTCGTCAATCTTTGAATCTTGA
TGATGCAAATCTCTATTTAAATCAGCTTTAAGTGACTCTGATGAACCATG
TTCCATGTTTAGATTTTGATTTTGTGATTCTGAGGGCAATTCAAAAAACG
ATGTAGGTCTACTAGATTCATCGTTTGAATCTTGATCGTACGAATCTTCA
AAGATACTAGTCATAAAAGATAGATCTGGTGAATTTTGGGGTTCTGAAAA
ATCCTCAGGATTATAAAATGTCGGTTTTCTTGGTGGTGATTCTGGTTCAG
TTGATTCAGGAATTTTTACATCTTTACCATTAAGCTCGTCAAAAAGATCA
ACAATGTTGTAATTATAAAGATCCATTACAGTTTCTNTCGTCAAAAAGAT
CAACAATGTTGTAAGTATAAAGATCCATTACAGTTTCATGACGTTCGTTT
GTTGGGTATGTTTGTATGATATGAACCAATACACCACTGGTTGAATTGAA
AACATTTTCTCGGTGACATTCGAGTTCAGTTTCTGGTAATCTGATAATAA
TTCGACTGTGCAACCATTGGAATTCTTCTATATCGAATTTGATCACGTGA
ACGATATTTTCTTCATTTTCTTCTTGTAGGAACAAATAATATTTACCAGT
GTGGAAGAGNAATCAATGGAATATGAATATAAAAATTTACCCGAGTAATC
ATATTCTAAGATTGTTGACTTAATGGTATTGTGTTTGTTATCGATCCTTT
CAAAATAGATCTTATGCTTGGTAAAATATCGAAAAACAAAAGAATTTTCC
AACGGTCTGTCTAATTCTATTACCAGTCTTTTTTCTTGCTTTATTTGATG
TAGCTCGATGTTTAAAAAATCCAAACATAAACTTCGATATGATACGAGTG
AAGGGTCGTTAGCTTCATCAACTGTTCGTTGAGAAAATGCTGAAATGATA
AGTTTTATATTGTTTCCAATGATATCNTTCAGTGTCACAGTCAAAATAAT
ACATCGGTGAAAAAGCGAAAAAAAATAGGCAAAATTTGTACGTAAGGTGG
AAAAGTGAAAATTTACGTATTCACACTCAAAAAGATTTTTGAATTCGAAA
AGTTATGACGAAGGTTTTATAAAAACCAACATAAGGATTCGCTATTACGT
TTTTCTATCTGCGTGTCCTAGCTGTCTGACTTTCGTCCCTCGGACCCTTA
GCAAATTCGCTTCCATCAATTGATGNAACCATAAAGGTCGATAGTAAAAT
ATTCCCTGTCGCTAGAATAACGTTCGATTGTATGAAGAAGAAAACCAACA
TCTGGATAAAAACAAAGCTGCTCGTAATTATAATATCCAACGCAGGAACG
AAGTTTAACGGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073087-exon-scaffold_86-1575043694:1403982..1405050 | TCONS_00073087-exon-scaffold_86-1575043694:1403982..1405050 | Clytia hemisphaerica | exon |
TCONS_00073087-exon-scaffold_86-1575043694:1400086..1400151 | TCONS_00073087-exon-scaffold_86-1575043694:1400086..1400151 | Clytia hemisphaerica | exon |
TCONS_00073087-exon-scaffold_86-1510915933:1403982..1405050 | TCONS_00073087-exon-scaffold_86-1510915933:1403982..1405050 | Clytia hemisphaerica | exon |
TCONS_00073087-exon-scaffold_86-1510915933:1400086..1400151 | TCONS_00073087-exon-scaffold_86-1510915933:1400086..1400151 | Clytia hemisphaerica | exon |
TCONS_00073087-exon-scaffold_86-1491911889:1403982..1405050 | TCONS_00073087-exon-scaffold_86-1491911889:1403982..1405050 | Clytia hemisphaerica | exon |
TCONS_00073087-exon-scaffold_86-1491911889:1400086..1400151 | TCONS_00073087-exon-scaffold_86-1491911889:1400086..1400151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:1400086..1405050 - |
Blast
The following BLAST results are available for this feature:
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