TCONS_00073078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073078
Unique NameTCONS_00073078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073078 ID=TCONS_00073078|Name=TCONS_00073078|organism=Clytia hemisphaerica|type=transcript|length=1756bp
tttCCATGTAACTTTATTGCAATTTTCATGTCAATCAAACGCAGTCTAGT
CCTTTTACATAAAAGGAAAATGTATCAATCTTCATTTAATGCCagaaaaa
tgaatgaaagagaataaaaaaaacccatgtcacaaatttttacaaatgtc
CGGATTTTGTTGCTTGTTTGTGTTCAAGCCAAATGCTATtataaacaaaa
ctaaaaacatGACAAGGTATACTTGCTAATGGCCAGGGTGTGGAACACAT
GCAAATACTTTGGGGGAGTTGAAGTATTTAGTAGTATAGCATAGTTTCAA
GTGATTTTGCTGAATAATATATTATGAATCCAACCAAAGATGGAagttgt
ttattttcttttaaaatagttttatatttttcttttgatttcagcTTTTC
TTGGAAGGAACTAAGATAAGAAATTTTGTTACCTGCTTCAAAGataaaga
gtttcttgtctttttcttcaaaagacTAAGACTCAACAAAACTGGGAAGT
ATGCAGACGACTTTCCTTACATTTCAAGATGTGGACCTGAAGTAAATTAT
ATAAGATGTGAAAGTAAGCCAATAGTATTCACAGATATCATTCCTGATTC
ACAAAACTCTGATTCTGATCAAATTGTTTTGAATGGAATTGGTGATAAAA
TGGCTTACTCTTTTGAACCTTCAAAACTCTGTATGTTACCTAAGAATGGA
AGGGTATATCACCCAGCCCCAAAGAGAGTTGGAGGTGCAGGGATTCTGAA
AACAAGTTTAGCAATCGAGTTCAGTTCATATTTCACCTTTGATGACAATT
GCAGTGATGAGGATCCACCAACACATTTCGAATGGAAAGGAAAAACATAC
CAACTTGAAAACGAGCTCTGGAATTCTCTGAAAGATGAAAATGTATTAGA
AGATGAAGATTGATATTTTAAAAGATGCACCTCGCTGACTAATTTTGTAG
ataatgaatatttttataaactaATTTATTTTTCCTGATATGAAACCAGT
TAGTTTtattagaatttcaaaatataaatagCCTCAAGATTTAAGCACTT
GCCTTTTCCCTCGCTTTGTAAAGAGTTTTAATGTGACTTcgctttatatt
tttctaagcAGAAAAATGAATTGtaatattttaagaaaagtGACTTTGTC
AACAAGAATGATGTCCACAGTGTCAAAACGTTTAGAAGGAAAAGTTGCAA
TAGTAACTGCATCAACAGCTGGAATCGGCTATGCAATTGCAGAGGGGTTA
GCAGAAAATGGTGCTAAAGTTGTCATTAGTAGTCGTAAAGAGAAAAATGT
AGAAGAAGCACTGCAACAATTGAAATCAAAAGATTTGGAAGTTTCTGGAT
GTGTTTGCCATGTTGCAAAAGAAGGCGATCGGACAAAGCTCTTAGAAGAG
GCATTAAAACAATATGGACAACTTGATATTTTGGTGAACAATGCAGGAAT
CAGTCCAGCTTTTGGTCCACTGCTCAAGACAACCTCTGAGCAATGGGACA
AAATCTTCACAACCAATGTCAAAGCAGGATTTCAAATGACACAAGAAGCT
ATGCCTCATTTAAATAAAACTAAAGGATCAGTTCTGTTCAACTCTTCGAT
CACAGGATATGTACCATTCCCTATGATTGGGGCATATTCAATCTCAAAGA
CAGCTTTATTAGGTTTAATCAAAGCATTAGCTACGGAATGTGGACCTACA
GGGGTTCGGGTTAATGGAATTGCTCCTGGAATCATTGAAACCAACCTCAG
TGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_86:1286152..1292150-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073078 ID=TCONS_00073078|Name=TCONS_00073078|organism=Clytia hemisphaerica|type=transcript|length=5999bp|location=Sequence derived from alignment at scaffold_86:1286152..1292150- (Clytia hemisphaerica)
TTTCCATGTAACTTTATTGCAATTTTCATGTCAATCAAACGCAGTCTAGT
CCTTTTACATAAAAGGAAAATGTATCAATCTTCATTTAATGCCAGAAAAA
TGAATGAAAGAGAATAAAAAAAACCCATGTCACAAATTTTTACAAATGTC
CGGATTTTGTTGCTTGTTTGTGTTCAAGCCAAATGCTATTATAAACAAAA
CTAAAAACATGACAAGGTATACTTGCTAATGGCCAGGGTGTGGAACACAT
GCAAATACTTTGGGGGAGTTGAAGTATTTAGTAGTATAGCATAGTTTCAA
GTGATTTTGCTGAATAATATATTATGAATCCAACCAAAGATGGAAGTTGT
TTATTTTCTTTTAAAATAGTTTTATATTTTTCTTTTGATTTCAGCTTTTC
TTGGAAGGAACTAAGATAAGAAATTTTGTTACCTGCTTCAAAGGTATGCC
AATTCTTCAATTTTTAAAACATAGACATTGTTTCAATGCACTCATGTATT
TTTGGATTCACACAACTTACTCTCGGGTACATAATAGCCTGGGGGAGGGT
TGGAAAAAATCTCAAAACTTGAGGGGGTTGGAATCCCACTGTATGATAAA
TTTTTGAAAAATTAATTAGTGGGAGCTTATTAAAGCTTATTACACTTATT
AAGTACCCAAGAGTAGGTCTTCAATCAACTGGTTCTCTAAGCTAAAAAAA
AAGAATTTGAATACAAATCAATCCCTATTTGAATTAATTTTTCAGATAAA
GAGTTTCTTGTCTTTTTCTTCAAAAGACTAAGACTCAACAAAACTGGGAA
GTATGCAGACGACTTTCCTTACATTTCAAGATGTGGACCTGAAGTAAATT
ATATAAGATGTGAAAGTAAGCCAATAGTATTCACAGATATCATTCCTGAT
TCACAAAACTCTGATTCTGATCAAATTGTTTTGAATGGAATTGGTGATAA
AATGGCTTACTCTTTTGAACCTTCAAAACTCTGTATGTTACCTAAGAATG
GAAGGGTATATCACCCAGCCCCAAAGAGAGTTGGAGGTGCAGGGATTCTG
AAAACAAGTTTAGCAATCGAGTTCAGTTCATATTTCACCTTTGATGACAA
TTGCAGTGATGAGGATCCACCAACACATTTCGAATGGAAAGGAAAAACAT
ACCAACTTGAAAACGAGCTCTGGAATTCTCTGAAAGATGAAAATGTATTA
GAAGATGAAGATTGATATTTTAAAAGATGCACCTCGCTGACTAATTTTGT
AGATAATGAATATTTTTATAAACTAATTTATTTTTCCTGATATGAAACCA
GTTAGTTTTATTAGAATTTCAAAATATAAATAGCCTCAAGATTTAAGCAC
TTGCCTTTTCCCTCGCTTTGTAAAGAGTTTTAATGTGACTTCGCTTTATA
TTTTTCTAAGCAGAAAAATGAATTGTAATATTTTAAGAAAAGTGACTTTG
TCAACAAGAATGATGTCCACAGTGTCAAAACGTTTAGAAGGAAAAGTTGC
AATAGTAACTGCATCAACAGCTGGGTAAACATTATTTTCATATTTTTTGA
TCTCTAAAAAAGTAATTAAAAAAAGAAACCTTTGAACAAGAATACAATTT
TTTGACCCTTTGTGATTATTGGCAAACATTGATGAGAATACTCTCTTATT
CTACCAGATTCTACTTGATGGTAATTTGGCATGCCTTGGGTTTTAAAAAT
TCTTCACAATTTTACTTTCATTAGAAACTAGAAATTTAACTTTTATTCAA
ATACAGAATCGGCTATGCAATTGCAGAGGGGTTAGCAGAAAATGGTGCTA
AAGTTGTCATTAGTAGTCGTAAAGAGAAAAATGTAGAAGAAGCACTGCAA
CAATTGAAATCAAAAGATTTGGAAGTTTCTGGATGTGTTTGCCATGTTGC
AAAAGAAGGCGATCGGACAAAGCTCTTAGAAGAGGTGAAATTCAATACCT
AAAATAAAGTCAATTTTTTTTCATATTTGAACGTGTGACTGTATATTCAT
CTTCTTAAGAAATTTCCATGTTAAATTTTTATCACCTCTAGCAAATACTT
TTTTTATAGGCATTAAAACAATATGGACAACTTGATATTTTGGTGAACAA
TGCAGGAATCAGTCCAGCTTTTGGTCCACTGCTCAAGGTATGTCCATTTC
AAAGTTGTTTAATAATTTCTTTTTATTTATTAGTTCAGAAACATATCTGA
ATGTTTTGAACATTACCGAACGTTCCAATCAAGTTAATTATTAATCTTTA
TAGCTCAAAGGGTTGTTTGCAAGCGTTCAGGAATACTCTTGACCGTTCTG
CAACATTTCTGAGCTTTTGGGAACAATCAAGAACTTTTCAGAGACATGTC
CTTACAATCTGTGAAAACGGCTAGTATGTAGGTTATGCAAAACAAGTCAA
TTTCTTATCTCATCATTGTTTTTTATATTGTTAGAGTTGCTCTTTCCTTT
AGACAACCTCTGAGCAATGGGACAAAATCTTCACAACCAATGTCAAAGCA
GGATTTCAAATGACACAAGAAGCTATGCCTCATTTAAATAAAACTAAGTA
TGTAAATCTAACTGGAGAATACTCTCGTCAATATGAATGAATGAAGCAAC
ATTTAAAATCAGCGGAAATCAATTCATTTCACTAGATTCATTAGTTTGTC
TTGATGCTGTTTTAAAATGAGAAGATAAATTTTAAAAGTTTCCCGTTCAA
AACAATAAAATAATCAATTTGTTTTATAGAGGATCAGTTCTGTTCAACTC
TTCGATCACAGGATATGTGCCATTCCCTGTAAGTCCAGAGAAACCATATT
CTACCAAATCAGTTGGGTGGTGGCAGGGAAGGCAGAGAGTAGCAAACACC
CCCTCCCCCAGAGGTAGAATTTCTCTGGGCGTTATAACTATAAGGCATGG
GATTGCTAAATTTGGTGCTCCTTTTGCCCCCCCTCTGAAATTAGCAGTTA
AGCTAAATAGGGGAATGATGGTCTAAGCATTTTTATGCTTACTACTTTGC
TCATGTCATTATTCCATAGACTTTTATATGAAGTTCCAGTTTTCCCAAAT
TTTGGTTGACTCACTTCGCTACTCTACACTATTGAGATCATAATTATCAA
ATTTATTGGAAGAGTAAAACATAATTTGCTGATTGTAATTATTTTTTATC
TTTCCTTAGATGATTGGGGCATATTCAATCTCAAAGACAGCTTTATTAGG
TTTAATCAAAGCATTAGCTACGGAATGTGGACCTACAGGGGTTCGGGTTA
ATGGAATTGCTCCTGGAATCATTGAAACCAACCTCAGTGAAATGGTAGGT
TTGATAATGCTTTCATTGATTCACTCACTCAAAAATTAACAATACACTCA
CTCAAAAATTAACAATGCCTTATTACACGAATATTACGAGACAAGTATTC
AACGGCCTTGAAATTTTCACGATCTGAAATTAACACAAATTTTTCTGCTT
TTTCGAGGAAACAGCGGCTGGTTTCAATTTAGGGGGTTTTTATTAACACG
AAATTTTTCAATTATTAGCAAATTCAATTCAATTCAATTAGCAAAATCAG
ATCAATAGCACTTATACCCCCATTTTTTTGATTTTTATCTGGAGTACCCA
CCCCCTAGCCCTACTTATTCCACCCCCCTACAATTAAGCACACAACAAGA
GTATATAAATTGGTTACAACTCTTTTAGGCTATTCTTCAAACACGAACAA
TATCTTTGTTTCGACGCTGACTTACGCGAAATTCTCCTTTTTTTATAGCT
TACTACAACAGATTCAATCAGTCAAACTATTTTAAGTAACACCCCACTTG
GAAGGTAATTTGTCTCTAACCGTCTTTATTTTGTTTTAATTATTTTTTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTACATAATTTTAGAACAGAATAGATTCACTCATTACCAAATGCTATCAC
AGAAAAAATGCTTTTGCTTCAGGCTTGATCAAAAATAAAACTTGAAAATA
TCGATAGAGTCCAAAATAAACAAACTTCAAAGTCATTTAAACTTATTACT
CATTTACAGTCATTATACTCTAAAGCTAAAACAAATCCAATTGAAACCTG
TTTAGACTGATATATGTACCCCGGGGTATTTTCTAGCTATAAGGGCAAAA
ATTAGGAAAGTTTTGCTGTCATTTTGATATGGATACCAACTTTCTGAATC
ATANCTATGAATGAATGAAGCAGCATTTAAAATCAGCGGAAATCAATTCA
TTTCACTAGATTCATTAGTTTGTCTTGATGCTATTTTAAAATGACAAGAT
AAATAGTTTTCCATTCAAATCAATAAAATAATCAATTTGTTTTATAGAGG
ATCAGTTCTGTTCAACTCTTCGATCACAGGATATGTACCATTCCCTGTAA
GTACAGAAAAATCATATTCTACCCTATCAGTTGGGTGGTCGCAGGGAAGG
CAGAGAGTAGCAAACACCCCCTAGAATTTTTCTGGGCGCTATAACTATAA
GGCATGAGATTGCTAAATTTGGTGCTCCTTTTGCCCCCCCCTGAAATTAG
CAGTTAAGCTAAATAGGCGAATAATGGTCTAAACATTTTATGCTTACTTA
CTTTGCTCATGTCATTATTCCATAGACTTTTATATGAAGTTCCAGTTTAC
CCAAATTTTGGTTGACTCACTACGCTACTCTACACTATTGGGATCATAAT
TATCAAATTTATTGGAAGAGTAAAACATAATTTGTTGATTGTAATTATGT
TTTATCTTTCCTTAGATGATTGGGGCATATTCAATCTCAAAGACAGCTTT
ATTAGGTTTAATCAAAGCATTAGCTACGGAATGTGGACCTACAGGGGTTC
GGGTTAATGGAATTGCTCCTGGAATCATTGAAACCAACCTCAGTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045299XLOC_045299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073078-exon-scaffold_86-1575043694:1291708..1292150TCONS_00073078-exon-scaffold_86-1575043694:1291708..1292150Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1575043694:1290627..1291405TCONS_00073078-exon-scaffold_86-1575043694:1290627..1291405Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1575043694:1290217..1290394TCONS_00073078-exon-scaffold_86-1575043694:1290217..1290394Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1575043694:1290014..1290091TCONS_00073078-exon-scaffold_86-1575043694:1290014..1290091Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1575043694:1289604..1289698TCONS_00073078-exon-scaffold_86-1575043694:1289604..1289698Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1575043694:1286655..1286703TCONS_00073078-exon-scaffold_86-1575043694:1286655..1286703Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1575043694:1286152..1286285TCONS_00073078-exon-scaffold_86-1575043694:1286152..1286285Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1510915933:1291708..1292150TCONS_00073078-exon-scaffold_86-1510915933:1291708..1292150Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1510915933:1290627..1291405TCONS_00073078-exon-scaffold_86-1510915933:1290627..1291405Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1510915933:1290217..1290394TCONS_00073078-exon-scaffold_86-1510915933:1290217..1290394Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1510915933:1290014..1290091TCONS_00073078-exon-scaffold_86-1510915933:1290014..1290091Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1510915933:1289604..1289698TCONS_00073078-exon-scaffold_86-1510915933:1289604..1289698Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1510915933:1286655..1286703TCONS_00073078-exon-scaffold_86-1510915933:1286655..1286703Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1510915933:1286152..1286285TCONS_00073078-exon-scaffold_86-1510915933:1286152..1286285Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1491911889:1291708..1292150TCONS_00073078-exon-scaffold_86-1491911889:1291708..1292150Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1491911889:1290627..1291405TCONS_00073078-exon-scaffold_86-1491911889:1290627..1291405Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1491911889:1290217..1290394TCONS_00073078-exon-scaffold_86-1491911889:1290217..1290394Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1491911889:1290014..1290091TCONS_00073078-exon-scaffold_86-1491911889:1290014..1290091Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1491911889:1289604..1289698TCONS_00073078-exon-scaffold_86-1491911889:1289604..1289698Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1491911889:1286655..1286703TCONS_00073078-exon-scaffold_86-1491911889:1286655..1286703Clytia hemisphaericaexon
TCONS_00073078-exon-scaffold_86-1491911889:1286152..1286285TCONS_00073078-exon-scaffold_86-1491911889:1286152..1286285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1286152..1292150 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.542834	0	2.58615	3.06499	2.46553	4.61631	0.515046	0	3.06876	1.27719	0.261119	2.17	0	0	0	2.20288e-07	1.24884	0	0	1.53718	2.01721	2.58032	3.60319	6.64783	1.26527	0.552264	1.3411	0.0347717
Blast
[Close]
BLAST of TCONS_00073078 vs. Swiss-Prot (Human)
Match: DHRS4 (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 2.510e-55
Identity = 101/206 (49.03%), Postives = 137/206 (66.50%), Query Frame = 3 
Query: 1149 STRMMSTVSKR---LEGKVAIVTASTAGIGYAIAEGLAENGAKVVISSRKEKNVEEALQQLKSKDLEVSGCVCHVAKEGDRTKLLEEALKQYGQLDILVNNAGISPAFGPLLKTTSEQWDKIFTTNVKAGFQMTQEAMPHLNKT-KGSVLFNSSITGYVPFPMIGAYSISKTALLGLIKALATECGPTGVRVNGIAPGIIETNLSE 1754
            S RM S+   R   L  KVA+VTAST GIG+AIA  LA++GA VV+SSRK++NV++A+  L+ + L V+G VCHV K  DR +L+  A+K +G +DILV+NA ++P FG ++  T E WDK    NVKA   MT+  +P + K   GSV+  SSI  + P P    Y++SKTALLGL K LA E  P  +RVN +APG+I+T+ S 
Sbjct:   16 SVRMASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSR 221
The following BLAST results are available for this feature:
BLAST of TCONS_00073078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHRS42.510e-5549.03Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
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