TCONS_00073076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073076
Unique NameTCONS_00073076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073076 ID=TCONS_00073076|Name=TCONS_00073076|organism=Clytia hemisphaerica|type=transcript|length=648bp
cAGAAAAATGAATTGtaatattttaagaaaagtGACTTTGTCAACAAGAA
TGATGTCCACAGTGTCAAAACGTTTAGAAGGAAAAGTTGCAATAGTAACT
GCATCAACAGCTGGAATCGGCTATGCAATTGCAGAGGGGTTAGCAGAAAA
TGGTGCTAAAGTTGTCATTAGTAGTCGTAAAGAGAAAAATGTAGAAGAAG
CACTGCAACAATTGAAATCAAAAGATTTGGAAGTTTCTGGATGTGTTTGC
CATGTTGCAAAAGAAGGCGATCGGACAAAGCTCTTAGAAGAGGCATTAAA
ACAATATGGACAACTTGATATTTTGGTGAACAATGCAGGAATCAGTCCAG
CTTTTGGTCCACTGCTCAAGACAACCTCTGAGCAATGGGACAAAATCTTC
ACAACCAATGTCAAAGCAGGATTTCAAATGACACAAGAAGCTATGCCTCA
TTTAAATAAAACTAAAGGATCAGTTCTGTTCAACTCTTCGATCACAGGAT
ATGTGCCATTCCCTATGATTGGGGCATATTCAATCTCAAAGACAGCTTTA
TTAGGTTTAATCAAAGCATTAGCTACGGAATGTGGACCTACAGGGGTTCG
GGTTAATGGAATTGCTCCTGGAATCATTGAAACCAACCTCAGTGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_86:1286152..1290740-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073076 ID=TCONS_00073076|Name=TCONS_00073076|organism=Clytia hemisphaerica|type=transcript|length=4589bp|location=Sequence derived from alignment at scaffold_86:1286152..1290740- (Clytia hemisphaerica)
CAGAAAAATGAATTGTAATATTTTAAGAAAAGTGACTTTGTCAACAAGAA TGATGTCCACAGTGTCAAAACGTTTAGAAGGAAAAGTTGCAATAGTAACT GCATCAACAGCTGGGTAAACATTATTTTCATATTTTTTGATCTCTAAAAA AGTAATTAAAAAAAGAAACCTTTGAACAAGAATACAATTTTTTGACCCTT TGTGATTATTGGCAAACATTGATGAGAATACTCTCTTATTCTACCAGATT CTACTTGATGGTAATTTGGCATGCCTTGGGTTTTAAAAATTCTTCACAAT TTTACTTTCATTAGAAACTAGAAATTTAACTTTTATTCAAATACAGAATC GGCTATGCAATTGCAGAGGGGTTAGCAGAAAATGGTGCTAAAGTTGTCAT TAGTAGTCGTAAAGAGAAAAATGTAGAAGAAGCACTGCAACAATTGAAAT CAAAAGATTTGGAAGTTTCTGGATGTGTTTGCCATGTTGCAAAAGAAGGC GATCGGACAAAGCTCTTAGAAGAGGTGAAATTCAATACCTAAAATAAAGT CAATTTTTTTTCATATTTGAACGTGTGACTGTATATTCATCTTCTTAAGA AATTTCCATGTTAAATTTTTATCACCTCTAGCAAATACTTTTTTTATAGG CATTAAAACAATATGGACAACTTGATATTTTGGTGAACAATGCAGGAATC AGTCCAGCTTTTGGTCCACTGCTCAAGGTATGTCCATTTCAAAGTTGTTT AATAATTTCTTTTTATTTATTAGTTCAGAAACATATCTGAATGTTTTGAA CATTACCGAACGTTCCAATCAAGTTAATTATTAATCTTTATAGCTCAAAG GGTTGTTTGCAAGCGTTCAGGAATACTCTTGACCGTTCTGCAACATTTCT GAGCTTTTGGGAACAATCAAGAACTTTTCAGAGACATGTCCTTACAATCT GTGAAAACGGCTAGTATGTAGGTTATGCAAAACAAGTCAATTTCTTATCT CATCATTGTTTTTTATATTGTTAGAGTTGCTCTTTCCTTTAGACAACCTC TGAGCAATGGGACAAAATCTTCACAACCAATGTCAAAGCAGGATTTCAAA TGACACAAGAAGCTATGCCTCATTTAAATAAAACTAAGTATGTAAATCTA ACTGGAGAATACTCTCGTCAATATGAATGAATGAAGCAACATTTAAAATC AGCGGAAATCAATTCATTTCACTAGATTCATTAGTTTGTCTTGATGCTGT TTTAAAATGAGAAGATAAATTTTAAAAGTTTCCCGTTCAAAACAATAAAA TAATCAATTTGTTTTATAGAGGATCAGTTCTGTTCAACTCTTCGATCACA GGATATGTGCCATTCCCTGTAAGTCCAGAGAAACCATATTCTACCAAATC AGTTGGGTGGTGGCAGGGAAGGCAGAGAGTAGCAAACACCCCCTCCCCCA GAGGTAGAATTTCTCTGGGCGTTATAACTATAAGGCATGGGATTGCTAAA TTTGGTGCTCCTTTTGCCCCCCCTCTGAAATTAGCAGTTAAGCTAAATAG GGGAATGATGGTCTAAGCATTTTTATGCTTACTACTTTGCTCATGTCATT ATTCCATAGACTTTTATATGAAGTTCCAGTTTTCCCAAATTTTGGTTGAC TCACTTCGCTACTCTACACTATTGAGATCATAATTATCAAATTTATTGGA AGAGTAAAACATAATTTGCTGATTGTAATTATTTTTTATCTTTCCTTAGA TGATTGGGGCATATTCAATCTCAAAGACAGCTTTATTAGGTTTAATCAAA GCATTAGCTACGGAATGTGGACCTACAGGGGTTCGGGTTAATGGAATTGC TCCTGGAATCATTGAAACCAACCTCAGTGAAATGGTAGGTTTGATAATGC TTTCATTGATTCACTCACTCAAAAATTAACAATACACTCACTCAAAAATT AACAATGCCTTATTACACGAATATTACGAGACAAGTATTCAACGGCCTTG AAATTTTCACGATCTGAAATTAACACAAATTTTTCTGCTTTTTCGAGGAA ACAGCGGCTGGTTTCAATTTAGGGGGTTTTTATTAACACGAAATTTTTCA ATTATTAGCAAATTCAATTCAATTCAATTAGCAAAATCAGATCAATAGCA CTTATACCCCCATTTTTTTGATTTTTATCTGGAGTACCCACCCCCTAGCC CTACTTATTCCACCCCCCTACAATTAAGCACACAACAAGAGTATATAAAT TGGTTACAACTCTTTTAGGCTATTCTTCAAACACGAACAATATCTTTGTT TCGACGCTGACTTACGCGAAATTCTCCTTTTTTTATAGCTTACTACAACA GATTCAATCAGTCAAACTATTTTAAGTAACACCCCACTTGGAAGGTAATT TGTCTCTAACCGTCTTTATTTTGTTTTAATTATTTTTTTTNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACATAATT TTAGAACAGAATAGATTCACTCATTACCAAATGCTATCACAGAAAAAATG CTTTTGCTTCAGGCTTGATCAAAAATAAAACTTGAAAATATCGATAGAGT CCAAAATAAACAAACTTCAAAGTCATTTAAACTTATTACTCATTTACAGT CATTATACTCTAAAGCTAAAACAAATCCAATTGAAACCTGTTTAGACTGA TATATGTACCCCGGGGTATTTTCTAGCTATAAGGGCAAAAATTAGGAAAG TTTTGCTGTCATTTTGATATGGATACCAACTTTCTGAATCATANCTATGA ATGAATGAAGCAGCATTTAAAATCAGCGGAAATCAATTCATTTCACTAGA TTCATTAGTTTGTCTTGATGCTATTTTAAAATGACAAGATAAATAGTTTT CCATTCAAATCAATAAAATAATCAATTTGTTTTATAGAGGATCAGTTCTG TTCAACTCTTCGATCACAGGATATGTACCATTCCCTGTAAGTACAGAAAA ATCATATTCTACCCTATCAGTTGGGTGGTCGCAGGGAAGGCAGAGAGTAG CAAACACCCCCTAGAATTTTTCTGGGCGCTATAACTATAAGGCATGAGAT TGCTAAATTTGGTGCTCCTTTTGCCCCCCCCTGAAATTAGCAGTTAAGCT AAATAGGCGAATAATGGTCTAAACATTTTATGCTTACTTACTTTGCTCAT GTCATTATTCCATAGACTTTTATATGAAGTTCCAGTTTACCCAAATTTTG GTTGACTCACTACGCTACTCTACACTATTGGGATCATAATTATCAAATTT ATTGGAAGAGTAAAACATAATTTGTTGATTGTAATTATGTTTTATCTTTC CTTAGATGATTGGGGCATATTCAATCTCAAAGACAGCTTTATTAGGTTTA ATCAAAGCATTAGCTACGGAATGTGGACCTACAGGGGTTCGGGTTAATGG AATTGCTCCTGGAATCATTGAAACCAACCTCAGTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045299XLOC_045299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073076-exon-scaffold_86-1575043694:1290627..1290740TCONS_00073076-exon-scaffold_86-1575043694:1290627..1290740Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1575043694:1290217..1290394TCONS_00073076-exon-scaffold_86-1575043694:1290217..1290394Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1575043694:1290014..1290091TCONS_00073076-exon-scaffold_86-1575043694:1290014..1290091Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1575043694:1289604..1289698TCONS_00073076-exon-scaffold_86-1575043694:1289604..1289698Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1575043694:1289373..1289421TCONS_00073076-exon-scaffold_86-1575043694:1289373..1289421Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1575043694:1286152..1286285TCONS_00073076-exon-scaffold_86-1575043694:1286152..1286285Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1510915933:1290627..1290740TCONS_00073076-exon-scaffold_86-1510915933:1290627..1290740Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1510915933:1290217..1290394TCONS_00073076-exon-scaffold_86-1510915933:1290217..1290394Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1510915933:1290014..1290091TCONS_00073076-exon-scaffold_86-1510915933:1290014..1290091Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1510915933:1289604..1289698TCONS_00073076-exon-scaffold_86-1510915933:1289604..1289698Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1510915933:1289373..1289421TCONS_00073076-exon-scaffold_86-1510915933:1289373..1289421Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1510915933:1286152..1286285TCONS_00073076-exon-scaffold_86-1510915933:1286152..1286285Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1491911889:1290627..1290740TCONS_00073076-exon-scaffold_86-1491911889:1290627..1290740Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1491911889:1290217..1290394TCONS_00073076-exon-scaffold_86-1491911889:1290217..1290394Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1491911889:1290014..1290091TCONS_00073076-exon-scaffold_86-1491911889:1290014..1290091Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1491911889:1289604..1289698TCONS_00073076-exon-scaffold_86-1491911889:1289604..1289698Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1491911889:1289373..1289421TCONS_00073076-exon-scaffold_86-1491911889:1289373..1289421Clytia hemisphaericaexon
TCONS_00073076-exon-scaffold_86-1491911889:1286152..1286285TCONS_00073076-exon-scaffold_86-1491911889:1286152..1286285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1286152..1290740 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.6619 20.7412 17.5527 14.486 6.23601 5.95451 11.8087 10.1317 13.4048 11.0622 9.33217 13.7826 20.7154 17.4117 21.3565 27.0473 17.0268 15.0469 8.56282 13.4081 10.2283 10.5851 12.6988 11.3338 12.4108 13.317 12.9425 6.46208 19.7793 16.4715
Blast
BLAST of TCONS_00073076 vs. Swiss-Prot (Human)
Match: DHRS4 (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 2.596e-59
Identity = 101/206 (49.03%), Postives = 137/206 (66.50%), Query Frame = 2
Query:   41 STRMMSTVSKR---LEGKVAIVTASTAGIGYAIAEGLAENGAKVVISSRKEKNVEEALQQLKSKDLEVSGCVCHVAKEGDRTKLLEEALKQYGQLDILVNNAGISPAFGPLLKTTSEQWDKIFTTNVKAGFQMTQEAMPHLNKT-KGSVLFNSSITGYVPFPMIGAYSISKTALLGLIKALATECGPTGVRVNGIAPGIIETNLSE 646
            S RM S+   R   L  KVA+VTAST GIG+AIA  LA++GA VV+SSRK++NV++A+  L+ + L V+G VCHV K  DR +L+  A+K +G +DILV+NA ++P FG ++  T E WDK    NVKA   MT+  +P + K   GSV+  SSI  + P P    Y++SKTALLGL K LA E  P  +RVN +APG+I+T+ S 
Sbjct:   16 SVRMASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSR 221          
The following BLAST results are available for this feature:
BLAST of TCONS_00073076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHRS42.596e-5949.03Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
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