TCONS_00073049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073049
Unique NameTCONS_00073049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073049 ID=TCONS_00073049|Name=TCONS_00073049|organism=Clytia hemisphaerica|type=transcript|length=2637bp
TGGAAGTGTACGTTTATGATAGGGGGAAGACGTTGAATTGAgAGATTTCA
TCTGTtagaaaaaacataaataaaatcgaCAACAACAAGAACAATAGTAA
CAACAACAGACAACTTCATGTACAACACTATGAATACCATGGTCGTGCAA
GCCAAACCAGAAATGATGACACACATACCACACCCACACCATCAATTAAA
ACCAGGTGTTGGTGGACCCGGGTCACCCGCTATGCAACACCCTGGGTTGG
TCGCACATCCAGGATTAGTTGGATTGAATGGAGATAACCATGTTAAACGA
CCTATGAATGCTTTTATGGTTTGGTCAAGAGGAAAGAGGAGACAGATGGC
CCAAGAACACCCTCGTATGCATAACTCTGAAATCTCTAAGCGGTTAGGTG
CACAATGGAAAGTCCTAACACCTGAAGAGAAACAGCCGTTTATTGATGAA
GCCAAGCGCCTTCGTGCCGTTCACATACAAGAACACCCTGATTACAAATA
CAAACCAAAACGCCGGAAGCcgaaacaaatgaaaaaagacaTGTACCCAG
CTTATAGCAACATGGCAGCCTCGACTACAATAATTCCGGGTATGGACCCA
AAATACGGCGGAATGGCCTACCAACAATCAATGGCATATGGTATCTCGAC
CATGTCACCCGATTTATACGGAAAAATGAATGCTGCATATGCCTATCCGG
CTGCTATCAGCCCCGGATACCCTGTGATGTACTCTAACTACCCTATGACA
ACTATGGGTACCACGGCACCAAGCGCCGGCTCAGGCAGCGGTGGAGCCCC
TTCCCCAACCTCCAGTAATGGAACTAGAGGCTATAATACAGCTTCCTTAG
GGTCACCTAATGGTTCGTCAACAGGCGCCACGATGGCGGATTCAAACGCA
AACACAACATATCGCCCAACTTCAACAGAATATATGACTTCTAAGAGCTA
TTACATTAATGGTGGACAGTACAGCCCTCTCCCTGCAGCAAACGCCACTC
AAGGTCACTCACAGCAACCACAAGCAGCCAGATACCCTTCACCTCATGAT
GAAAGTCGAATCTCACAAAGCGTCGTCTCACAGAGTAATTCAGATGCAGC
AACCACCGGCTCCATTTTAATGCCAAAAAGCGTAAATGGAAGCGCAGAGG
AACACAGCCCGTCACCACCAACTTATCCATCAACTAATACACCCGTAGGA
CGACATTGGACACCTTCGGGTGGTTCCGGGGCACCGACTCAAGATATGAC
TAGTGGGAATTTTCATTAAAGATGGAGTCGCGTacaacagaaaaacaaaa
aaaaatagaagaataaaaaacaacacATAAAAAGATGATGTAAATTTTGT
TATGTGAATACAAAGAGAAGGCGGACCTTTAGCGAAATGGAGGGATATTT
AGTGAAGAAAAGGCAGGCTCCTTTTATGAGAAGAAGATATTTTTTATTAT
GAGAGAGGGGAGCCAAAAAATGGTGTAGAGAAAACAACCCACTTTTAACG
ACCAAAAAAGATTGGCGTCAAAATGTCTTCACACTTGCGTACGGGGGAGA
TGAGGCGTCAAATGATGGATaagaattagaaaattttgggcGAAAAAATG
AAGGTTTTCGGATGTCACACCAGTGGTATGAAATATCGCACGAAATAGAT
ATAGTTGTGtttacttcaaaatttttgggttGGTACTTGTTGTGGTTTCA
ACAATACAGATTACAATAATTGCGTTCACTAAAAGGGACTGGGTCCCAAC
TAGAAGGTAGTCAAACATTAGAGATAACAAACTCTTTCAAAGACTTATAT
AGGATAATCTCTTTCCCGCTTGGAATCGAGACTAATCATTTAGGATGTTT
TTTAATCCTCCACACACATTTAACGTGTTTTggtatatattttatttttc
atcttcatttaaGAGATTTatttacttcattttttttaaataacaaaaag
aTATGAAATTATTGTCACACATTATGTTTCACAGGATATGGATCCGATTC
AGCAACAGATTCTATAAACAGTTCTAGAAACAATTTGCgttaaatttgcc
caaaattaaGAAATACTTAAATAATATTTTAGGAGTCTCAATTTTTTTCC
GGTACCACAGCTCTGTGTTCCCTTTCGTGGGAGCAAAGTTATTTCTATAG
CTCCGTAAAGCCATTTTTACTTtttgcaaaattgatttttgttttaacAA
TCGACCCATGGTCGTCGTTACAATATTTGTTGAAAggttttgtttataat
tttttcgaCCTACACCGAATCATGAATCATCAAGCCATTAAGGCTACACA
TTCGGCTACACATTCCAAAAAaatcgatcaaagattttgtttggCCGAGG
CGGGGCCGAGATCAAGAAAGTGCTTTTCGGGTTTATATAAAACTGAAAGG
CATTATGAGTAGACACAAactttttatgagaaaaaataGGTTTGATATAT
TATGCTATCATCATATATATTTCGAGTTTATCAATCGACTActtattatt
tttatcaaaatattgttttttgctgataatttataatatttGTTTATTAA
CGCTATATAATATAAAACGGCGATTGTTTGAAAAGCAATcctaatatttt
attttgaaagaaaatgaaacaGCAAAATAATTCCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_86:992051..1005477-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073049 ID=TCONS_00073049|Name=TCONS_00073049|organism=Clytia hemisphaerica|type=transcript|length=13427bp|location=Sequence derived from alignment at scaffold_86:992051..1005477- (Clytia hemisphaerica)
TGGAAGTGTACGTTTATGATAGGGGGAAGACGTTGAATTGAGGTAAAAGC TTTTTTTTTTATTTTTGTGTTTTTGTTTGGGTTTTTTTATTAAAATACTA TAATACTTTCTTTGTTTTTTTTTACCACAACAAAAGGTTTATTAACTAAC AGTATAATTCAACATAATAATACAACAATTTAATACAACTCTTTTCTATT TTTCTTTTCATATTTATACATTAATTAATATATTCTTCATATTATCACTA ATTATTTTTCTTTTAAATGATTTCAAAAAAAAATCGTAAATTTTGGCAGC CATGTGCATTTTACATGTAGAAAAAGTCAGACAAACATTCTTTTCAAGGG ATGAGATTTTATCTTGATTTGATGCAAAGGAGATACTTAAAACCTTGGAC AGCTATGTCTTCACACTGTTCGCTAGCGCCTCAAAGCTTGCAAGCGACTA AAAAGCCAGCGCTATCCTTTTTTTGGTTTATACCAGAAAAAACACTTTAA TAGCTTAGTACCCGTTTTTCGTAGTACTTTTCATTTTTGCTGAACATCAT TTGTTTCGGGCCAAATTATTAGATTGATACTTTAGAGTCTTGAGTCAATC GAATGATGAAATCTAACGAAATATCGAAAAAATACCTTTCTGCTTGGGCG TGTAGGTGGCGTTATCGTTATCAAATGACGTTATCCTACCTGATGACAAT GATTTAACGATAAACGTACCGCTGTTTGTCGACAAAGAAAACATAGCCTG AAAAAAGAAGATTGGATACTGTAGATTCAAAAAAATCTTTATACGGTTTG TCCGGAAAAAAATCAATAAAAAATGGAAGCAATAGTCATATTGAATTTCG CAGAAATTGCTATTTATTCCTACAGTACCTAGCCTGGGCTTTTTTGAGGA ATTAAAGTCCGGGGGGGGGGGCAAACAGCCCACCCCTCATAAAATTATCG AAAAGTCATAAAACTTGGTGATGCATTATCACGAGAAGGTTGTTTTGGCA CTCAAAATTTTTTTATTGTACATCTTTCGATGACAACAACAGTTTTTGTA AGAACTTTTGCAAAAAATGCGAAAAATGACCTCACTTCAAACTGCTATGT TAGCTCTTGAAGTAGAAATGAATTTTCAATTCTGTTTCGATATTCTGAAA GCCAATTAAATTCCTCACTAACGATTTCCAATATTTTCAGGTCTAAAGAC GGTACAGTGCGCCAAAATTGTTATAATTAGTTTTTTCTGAAATGGCACTC CATCATGGAAATATGATGTCATCGCATAAAATTTTTTTTCGATTTTTTCC TTTCGTACCTCTATCCGTTGCAAAGATATCTAAGTTTATAATTTGTTAGA AAATCCATACATTTTGCCTTAAAATTTGGATCAATTTCAAAAAATGCTGA CGTCGTCAAATTTTGGAAAGCAAGAAAAAAAGTTTTTTCTGGAAAGTAAA GCTAAGTAAAATTTAGTAAGACTCATGAATTTTCAAGGCTATATCTAAAG TCCCTGAACTTCCAGGAAAACAAGTTTGTCGAGGGAGGGGGAAGCTTTGT CCCCCCCTGGGCTAGATAGGTCTTCCTGAAATTTTAAGACTATAAAGCTT TAAAGGATTTTATAGGGATTTACTGGTCAGGCAATGCAATTTAAGTATTT TAGAGTCCATTCTGAAAAAAATTTATTTCATTTAGGTATTCAGATTTCGT AATACATTATTTCTTTATAAGAACAAGCTGTTTTTGAATACTTTTTGACC CCTTGAAAAGATACTTGCAAATCACCAAATCCAGACTCTATATTGTTTTT AAGTTGTAATTCTTTTTTAACGATTTCGAGCCTCATTATTAATACTAAAT TATTCTTACAAAAAAGAGAGAAAAAAACATAAATTCAAAAATCAATTTTC CTAAATAGTAACCCACGTGAAAAAATAATCTGGGAAATAACATATGTTGC ATAAGTGTTGTGTTGTACACAACATACGGAGGGCTTTTATGGGTAATTGG CCTAATTGTTCGGAAAGCAAAACATGTGAAAACTAGTAATTAATTTAAAA TGAAGCCTATTAACACTTACTACAAAGGCCAAGTGTTTTATCCGTTAAAA TTGAAATCAAAACAAAGGAAAAGTGAAAATTGAATTTTTCGATGGATAGA GGTCTCTCTTTTTCCGAATCCCTTTTAATTTTTACAGTCCCTTATTTCAA AATTACACAATTTTTACAGTCCCTTATTTCAAAATTACACGCTTTTTTTA TAAGAATGATGTTTTTTTCAATTCATCATGAACATTCTTAACTTTTTGAG GAAAATCGCCCTTAAATAATGTTAAAGTAATTTTAGGTTTGGGTCCAATT CCCAGCCAAAATCTAGCATGTAATAAAATTCCATGAACTAAACCAAAAAT TTGGCATTGTTGTTGAAGCTTTTAGTATTGCTGGGTAATAATTGGCAATT TAATGGTAAATGCTCTAAAAATGGCATTCTTAGGTTCAGTTACCAAATTC CATGATGGCGGTATTTTTACCACATTTTTAATTTTTTTTGCCAATTTCAT CATAAATATTCTTATCAAGTATATTCTTATAAAAAAAACGTGNTTTTTAA TTTTTTGGCCAATTTCATCATATGAAATTATATATTCTTATAAAAAAAAC GTGTATTGCGAAACATCAGTCAAAATTCAACTGCTATCTTATCATTTCAA GACTTTCACTTTCGGTTTCAATTCTTTAATTTGTTATCGACTTTTTATAA CGTTTTCTGTTTTTCAAAGAAATTACCAAGAGGCGCATAATTTGGGGTAT AAACAATTGCCTTTAACAAGAGTCATACATATTTTCAACCTCTCTCTTTT AATCTTTGCTTAAGTTCTTAGGCTGAGCCCCGCTTAATCCTAAAGACTTT GGCGCGTTAAGAGACAAAACAAGAGGCTTAAAGTCCCTTTCTATATAGAT ACGTGAGAAGCTGTCGTCAACTACAAAGAAAATCACAAACAAACGAAAGA CATATGATAAAATAAATAAAAGCATAACAAAATATTTAATTTAATTTTAG CGGGTTTCGCGTAAATGTAGTATTCTTTTCTTCTTTACATTATTTTCATG ATTTTTTTAAATTTTCATCATGAAGCATGGCTCTTGGATTGTTCTTGGTC ACTTTTTCTTCATGAAAATGAGGTAATCATTTAGCATGTAAGGAAGATTT TCTGTTTTCGTAAGCTACAGTAATTTTATGTCAGATTAATGAAACCTAGA GATCTGAGTGTAAACAAGTGCTAGTTTATACACGAGACCTTCCAAGTAGG CTCAAAATTTACGCCATTACGCTGACTCCTGGAGTGCTCCGTACATTCCT CTGTATCTAATCTTACCGAAGACGGTTTAAATATAAAGTTTCTAATCTCA GGTTCTAGCTAAAGTATGAGCCAAAAAATTTCCATCAATTTTTGACAACT AGTCGTTAAAATAAGAATATGAAAAAAANTTTTAAATTTTCATCATGAAG CATGGCTCTTGGATTGTTCTTGGTCACTTTTTCTTCATGAAAATGAGGTA ATCATTTAGCATGTAAGGAAGATTTTCTGTTTTCGTAAGCTACAGTAATT TTATGTCAGATTAATGAAACCTAGAGATCTGAGTGCAAACAAGTGCTAGT TTTTACACGAGACCTTCCAAGTAGGCTCAAAATTTACGCCATTACGCTGA CTCCTGGAGGGCTCCGTACATTCCTCTGTATCTAATCTTACCGTGTAATT GAGACTGAAGACGGTTTAAATATAAAGTTTCTAATCTCAGGTTCTAGCTA AAGTATGAGCCAAAAAATTTCCATCAATTTTTGACAACTAGTCGTTAAAA TAAGAATATGAAAAAAAACTAATAAATTGCAAGTGTCTCTTAACAAGCAA AGGTGCCAGTAATTACAGAGTACTAGGTCAGAATCCAACTTTGGGATGAC ATCTTTCTAACGTACATTTTACGTACTTTAGAGTACTTTACCGAGTCTTT ATAGAAATTATAGGAAATAGATGCTAACGAAAAAAAGTTTATTCAAAAAA TTACTGTTTACGCTCAAGGTCTTTTCAAATAAGAACCGCGCACACGCGCA AATTATTGGGAGCCTGGCGCTAATTACTATTGCTATGGAAATAGTTTGTT TTGAATGGAACTGAGAAATTTCGAGCTTATTGATTGGCGGACAGAAATTG AAGCATGTGTTAAAAGAAGTAAACATGTAAAAAAAAATATAATATATATT TTCTCTTTCTTTCGTTCAGAGAAGCATATATTGTTCTTTATATATATCTT TTTTTTTAATTTCTTTATGGTTCACTCAATGTTCTTTTTTTCAAAGTTGG GTGTTGAATGGTGGGGGTTACTAGTTGTAAAAAAATTGATACCTTATGTC AAAAAAAGGAGTGAAAAAGAAATTGATAAGAGTTGTAGCCAATCAGAACG ATCTATTCATAGTGTTTACGCGCACTTGAAAAATTCGACAAATCTGATTG GTTGGTTTTTCTTCGTTCCTATTGTTTGTGAGGTGAGAACAATAAAAAAG AATAAGAAAGAGAACATTTTTAAAAAGGTATCATTTTTTTTCATCATCTT CAATGGATTAATTCTTTTCTTAATGATAGGTCGAAGAGAGGAGGGGGAAG GCTTGAAAGAAGTTTTCTTTATGCTATTTACATTATAGATCTTTTGATTA AAAGATGAGTCGAGTGTAAAGGCTAGTATTATCACTTCTACATTTTTTGT GATGAGTAGACTTGAATAAGTTTGTGATTTTTATAGATCTTTTGATAAAT ACTACTTTTTTTATACTTTATACATTCTTCTTTATTCTTTTGAGTACTTG TTTTCAGCAGACTCCTTTTTATATAAAATTTCTTTCTTTTTTTTAAGTAC CTATCAAATTCTAGGAATCTGTAATGAATGCTACTATATGTACATCTTTT AAGGTGACTTTTAATAAGTTAAGAAGCTCTCCTCGCATTTGCTAGTAATT AATAGAACATTTTAAAGGGGAACTTAAAGCCAATATATCATTGCCCTTTT CAAAATGCTTTATGAAGCATGTTAAGAAATTTAAAATTGAACTTCTGGTT AAAATCCTAAAGACAAATTGTGGTNTATAATATATATTTTCTCTTTCTTT CGTTCAGGGAAGCATATATCGTTCTTTATATATATCTTTTTTTTTAATTT CTTTATGGTTCACTCAATGTTCTTTTTTTTCAAAGTTGGGTGTTGAATGG TGGGGGTTACTAGTTATAAAAAAATTGATACCTTATGTCAAAAAAAGGAG TGAAAAAGAAATTGATAAGAGTTGTAGCCAATCAGAACGATCTATTCATA GTGTTTACGCGCACTTGAAAAATTCGACAAATCTGATTGGTTGGTTTTTC TTCGTTCCTATTGTTTGTGAGGTGAGAACAATAAAAAAGAATAAGAAAGA GAACATTTTTAAAAAGGTATCATTTTTTTTCATCATCTTCAATGGATTAA TTCTTTTCTTAATGATAGGTCGAAGAGAGGAGGGGGAAGGCTTGAAAGAA GTTTTCTTTATGCTATTTACATTATAGATCTTTTGATTAAAAGATGAGTC GAGTGTAAAGGCTAGTATTATCACTTCTACATTTTTTGTGATGAGTAGAC TTGAATAAGTTTGTGATTTTTATAGATCTTTTGATAAATACTACTTTTTT TATACTTTATACATTCTTCTTTATTCTTTTGAGTACTTGTTTTCAGCAGA CTCCTTTTTATATAAAATTTCTTTCTTTTTTTTAAGTACCTATCAAATTC TAGGAATCTGTAATGAATGCTACTATATGTACATCTTTTAAGGTGACTTT TAATAAGTTAAGAAGCTCTCCTCGCATTTGCTAGTAATTAATAGAACATT TTAAAGGGGAACTTAAAGCCAATATATCATTGCCCTTTTCAAAATGCTTT ATGAAGCATGTTAAGAAATTTAAAATTGAACTTCTGGTTAAAATCCTAAA GACAAATTGTGGTTCGTCATGCCCTTCTATATCAGCGAAGTATTGGGTCC TCTTACAGTATTTGGAGTATGATTTCCAAAAGATATGTCAAACGCCATTC TCATCTCTTTAAAAATGTCGTCCAAATCAACATCGCGACATATGCCTATA TTTTCTTGTGTCTGCGAAGTCCTCTTGCCGACAAAATCGGAGCCGCGGTA ATATACCGTAATATTCGCACGTTCGTCTAACTTACTTCGATCCGTCGCGA ATTGAAGTTAGTAGAGTTGTGCTGACTTTATATTCGAAACACGGAACTGT TAAACATGTTCGCGCGCGAGTTATCTTTTTCTTTTTTTTGTAGTACTTCT GTTTTTGTTGACCTTTAAGTCGTGTTGTTTCCCGTGAAACACAGTTGCTA CTACCGTTAGAACTCTCTAAAAAAACTTTTTTTGATATCACGATGGAATG CTGTGGTGTCACCTCGATGTGGTTGGGTTTTTGGATTAGCTTTAAAGTAA AAATCGACTTTTGTGCGTTTAATTTATTGCTTTAAAAAGTTAGCTTTAAA ATTCTTGATTGCTGGACAAAAGGCTAGAGGCAATCTTTTATGTTGAGAAA ATCTAAATCACATAAGACATGCCAGATGGATTGAGTTTAGACTCGCATTT AGGGCTGGACTAGAAACTTTCGGATGGGAAATGAAGCTACTTAATTTATC ATTCAGAACGCCCAGGCGTGGTTTAAACACAAACGTCGGATTGAAAGTAA AATCTATCGCTAGATTTCAAAAAATGCAGTCCTCAAAAACAAAGGAACCG CTAGATACAATCCGTCGTCATGATTGCGGCGCGTTCTGGATGGGAAATAA CTGGCTTCACTTTTTCTTGCCTGGGAAAGGTTAGAGATTCTACTCTAGCC CTTCGGCTTTAAACTCAATCATCAGACGTACCCAACATCGGCTCTGCAGC CGTTTTGTATTCTGAGAGAGATTTAAATATGGCAGAGCGACATTTATAAA AGTTTAAAGATCTTTACTAGAATATTTTCACCCTCTAACAAAGGTTTAGG TATCCAATTACTGATTACTTTGTTATTTGCTTATTCATCATGACGTAGAG TTTTATGTTTTTGATAATTAAGTAATTTAATAAGAATTCCCAAAAGTCAT CAAATAAAATAGTTCAAGGATTTCTTTGTCCTAGTCTAATTATCACATTT TGTAAAAGCCGCCAAATTTTGTATGTTGTTTTGTATGTTTCTTTGTCCTC TCTTTTTATTATGACAAATGGATTTTATGTAAGGAGACTGTAATGAAGGC GTTTAACAAAATTTACTGTGGTATGTTATGTTTTAAATTACTTTTAAGCT CAGATTTATTAAGGGTGTCTTTTCGCAAAGGAAATTTATCTATTTTAGCA TTTTCTGACTCATCTAAAACTTCAGAAGCTTTAACTTTTCCTTGAAAGAA CCATAAGTGAAGCAACTAAATCTAAGATTGCCATTTTTAGAGCGATAAAA ATCCGGTATAAATACACTAAACTGTCGTAAAAATACCATTCTTTTGCTTG AGGTATGTATTACTTGTTAAATTTGGGTTAAGTTTCTAAGATGCTAATCT AGGAATATTTTAAGATAAGAATATCCCTCATGAAATGGAAATAAAACGCG TAAAAAAACATGTAAAGAACAGTACGGGAGGTTCAACTTGTAACTAATCA ATGACTGAGCAAGCGGTCGATCATTAAGAGACTCAAGAGGGCAAGCTCAG AAACGTTGTTCATATTATTACGATACATCTAAGGGGACAGTTATACGGAT ATAAGATTGTCATTCTTAACCGCATCATTGTTTCTAATATAAACAATTTT GTTTGTTTAATGTGAGTGTTAGAGGAAGTAAATTGCTTCAAAGTGCTGCG TTCTTAAGATTAGCCGCTTCCATTTGCTTTCAGGGAAATTAGTTTTTTCT TGCCTTATTATCATCAGAACTTACAGAAAGTATCTGGTAAGACAGTATGG GACAACAAAAATCCAGCGAAATTTGCTTAAGGTAAAAAGTTACACTCAAA GAATACAGTGCAAAAAGAATGCAAAGAAAATTAGGTAGGGTAAATGTATT TTTTAGGTGGTTTGAATAATTTTTTCTGTTCTTTAGAGATTTCATCTGTT AGAAAAAACATAAATAAAATCGACAACAACAAGAACAATAGTAACAACAA CAGACAACTTCATGTACAACACTATGAATACCATGGTCGTGCAAGCCAAA CCAGAAATGATGACACACATACCACACCCACACCATCAATTAAAACCAGG TGTTGGTGGACCCGGGTCACCCGCTATGCAACACCCTGGTAAGAACTTTG TTTGAGTGGGCTCACGTCCAAACGGTAGCGAACATTTCTAAGCTCTTTGC TAAAAGGGATTGGCATGGATACAAACTATATAAGAGCTGACTAAGGCTTC GATAGCCTTTAGTATTAAAAACAAGTTAAGAACACCCAATTTCTTAGGAA ATTGCACAAAAATGCCCAAAAGATGGTGAAATTAGAACATTTTAGGAACA TTTTTAGGCTGAAAACTGAAAAAGTTATAAACATTATGAACATTTTGGAT GTTCTTATAAAGAACGTGTACATGTGCAATCTAAAACACCATTCGGGCAA CCATATAGATATTACCACAAATAGACTTACAACAACATTACCAATCAAAT CCACCCTTGAGACCTAGTTTATTGTAAGTTACTTTCAATGAATTTTTGTT CTTAATTTTTATCATTCAGGGTTGGTCGCACATCCAGGATTAGTTGGATT GAATGGAGATAACCATGTTAAACGACCTATGAATGCTTTTATGGTGAGTG ATTTGCAACTATCGGGCATTCCGTGTACATAGTATACATTTTTGAAAACA CGAAGTGGAAGTTTGGCCTAAGCTGAGATCAACAATTTAAGCTTAAAAGC GAACTCGGTAGCATCTGGTCTTGATCGATGTGCTTTAGAATTCTCCAAAA ACAGATAGTCAAGCCTCCAACTAAAATCTTTGCGTTCAAGCAAATTTAGT ACCCACATAGAAGAAATTTGTAGTGGGTTAATATAGTCATAACATCGAAA ACCCAAGGTTACACATCAATCCATGTATCCACTTCAAACTAGCTGACATC TATATTATATTCTTTGCCTTAGGTTTGGTCAAGAGGAAAGAGGAGACAGA TGGCCCAAGAACACCCTCGTATGCATAACTCTGAAATCTCTAAGCGGTTA GGTGCACAATGGAAAGTCCTAACACCTGAAGAGAAACAGCCGTTTATTGG TAAGACCTTAATTATTGGTAGCCCAATAGATAAAGAGTCAATCCTTGGGG TTAAAAATTAGATTTTGATTACAAAACAATAACTTTTTGGAACGAAGACA AAAAGCCATCCAATTTGAAATTGAACACTTAAAAATAGTGTANTGAACAA AGACAAAAAGCCATCCAATTTGAAATTGAACACTTAGAAATAGTGTAGTA TCCATAGCTGATAACTTGTTCGAGTTAAGATTCGAGATATTAGATATGAA GAACCTACTGTGTAACATTTCATTGCGTGAAACCGGTTAACACTTTTGGA TTTGAGTCAAAATTCTCTCTGTAAAACATTAAGGAAGGAAATGGGATACA AGAACGGTCTAAGAACGTATGAAAAGGTGTGAAGCTAATTAGCCGGACGT CAAGATCTCTAATGGATTATGACCTATTTAAGGGGCTGTACTGAAAAGCT TTGTTTTACTTAGACACGATTTCCTGTAAAGGAAATGCACTGGTTGTGTT GAGGATTGACAGTGAGCTTACTTACTATATTTCGAAAAATTTTGCTTTAA TCAGACTTATGAATTTTGTAATCATGAGTCATCAACAGGGATATTTTACA TTAGAATCGGCAAAATTAACCAAATAGAAACGACCAGGTTAAATGTTTGA AGAATTTCTAAAAAGGAAGACTCTTCGAGGAAATTTCGTATTGGTATTCT AGTAATTCTAACTTTTATGAAGTCCACAGTTTTTATATAATTACATGTGT TTGTCGTGAAAGATGAAAGAAGTAACGCGTACAAAAAAAGTTAGTTAGTA TTTCAATATTGACTTAAAGATTTTAATATTGAACGGAATTCAAAAAGGGT GTTTACTGCCTTCTAACCGGTTAATATTATGATTCAACGAAAAAAAGGGG ACTTTATTGACATAGTAATGTTGATTTGATTGCTTTCGTTTTTCTTTGAT GTAGATGAAGCCAAGCGCCTTCGTGCCGTTCACATACAAGAACACCCTGA TTACAAATACAAACCAAAACGCCGGAAGCCGAAACAAATGAAAAAAGACA TGTACCCAGCTTATAGCAACATGGCAGCCTCGACTACAATAATTCCGGGT ATGGACCCAAAATACGGCGGAATGGCCTACCAACAATCAATGGCATATGG TATCTCGACCATGTCACCCGATTTATACGGAAAAATGAATGCTGCATATG CCTATCCGGCTGCTATCAGCCCCGGATACCCTGTGATGTACTCTAACTAC CCTATGACAACTATGGGTACCACGGCACCAAGCGCCGGCTCAGGCAGCGG TGGAGCCCCTTCCCCAACCTCCAGTAATGGAACTAGAGGCTATAATACAG CTTCCTTAGGGTCACCTAATGGTTCGTCAACAGGCGCCACGATGGCGGAT TCAAACGCAAACACAACATATCGCCCAACTTCAACAGAATATATGACTTC TAAGAGCTATTACATTAATGGTGGACAGTACAGCCCTCTCCCTGCAGCAA ACGCCACTCAAGGTAAAAATTAGCTTTCAATCAATGGGTTTGTTGATAAT GGGTCTAAAAGATAGTTTGGGCTCAGAAACGACTTTTGAAAAATACCAGG GACCAAACATGTTCACAAGAAAATCTCTTTTGGGCTGGGCTGGATTATTT TTAGGGTTCGGAGAAATTAAAGTAGAGCGGTGTCAAATAGAACTTCTATC ATTCACATTTTCCTATGATTCGAACTTCGTTCATTTCGATTCAGTTCATA CTTCGATTCTGAATTAGCAGAGTCAGAGGTTTTCCGACTCTGGTAAAAAA TGTCTGAGAACAGATACAGTACAAAAATGAAATACAACTAATAATTGATT TATATCAGGTCACTCACAGCAACCACAAGCAGCCAGATACCCTTCACCTC ATGATGAAAGTCGAATCTCACAAAGCGTCGTCTCACAGAGTAATTCAGAT GCAGCAACCACCGGCTCCATTTTAATGCCAAAAAGCGTAAATGGAAGCGC AGAGGAACACAGCCCGTCACCACCAACTTATCCATCAACTAATACACCCG TAGGACGACATTGGACACCTTCGGGTGGTTCCGGGGCACCGACTCAANCA CACCCGTAGGACGACATTGGACACCTTCGGGTGGTTCCGGGGCACCGACT CAAGATATGACTAGGTAAATAGTGAAAAGAATTCAAAGAATTGCTTTCCA ACTATCTTCCTTCAGGAGTGGGTAGTAGAGCAGGTGTATGCACTTCGTCC TTATCGGGATATAGTTTTTGATTTACATAATTAAACGTATTTTTAGGGAA GATTGCAGCTTTTCAGGGGGACGGGGAGAATAAAGAAGTATCTAAGGATA TTTTACTACTCTAGTTTTTCCCTAAATTTGCAATATTTTCTACAAGTCCC AGACCCCTTAAAATTTTACAAGGCGCCAGGATATGGAACCATTTCCTCAA TTGTGGAAGGCTCCCAGGATATACCATGTCTACCCAGTTGTGTAATTTAG GTTTAAAATGAAAAATGGGAGGGACTGATATAATAATTTCCGTAAGGATT CAACCTCATACGTTAGGGGTCTTGGCACCAAATTATATAATACACATCAA TTATAGAATCTTGATTATTAAGCGTGTGGTGTTAGGGTGCAAATTATGAC TCATTGCTCACTGAATGATGCAATCTGAATTGTGTCTCTTTAAAAAAAAA ACCTTTGTAACAAAACGTATCATTTTATGTTTCTTCATTTTAGTGGGAAT TTTCATTAAAGATGGAGTCGCGTACAACAGAAAAACAAAAAAAAATAGAA GAATAAAAAACAACACATAAAAAGATGATGTAAATTTTGTTATGTGAATA CAAAGAGAAGGCGGACCTTTAGCGAAATGGAGGGATATTTAGTGAAGAAA AGGCAGGCTCCTTTTATGAGAAGAAGATATTTTTTATTATGAGAGAGGGG AGCCAAAAAATGGTGTAGAGAAAACAACCCACTTTTAACGACCAAAAAAG ATTGGCGTCAAAATGTCTTCACACTTGCGTACGGGGGAGATGAGGCGTCA AATGATGGATAAGAATTAGAAAATTTTGGGCGAAAAAATGAAGGTTTTCG GATGTCACACCAGTGGTATGAAATATCGCACGAAATAGATATAGTTGTGT TTACTTCAAAATTTTTGGGTTGGTACTTGTTGTGGTTTCAACAATACAGA TTACAATAATTGCGTTCACTAAAAGGGACTGGGTCCCAACTAGAAGGTAG TCAAACATTAGAGATAACAAACTCTTTCAAAGACTTATATAGGATAATCT CTTTCCCGCTTGGAATCGAGACTAATCATTTAGGATGTTTTTTAATCCTC CACACACATTTAACGTGTTTTGGTATATATTTTATTTTTCATCTTCATTT AAGAGATTTATTTACTTCATTTTTTTTAAATAACAAAAAGATATGAAATT ATTGTCACACATTATGTTTCACAGGATATGGATCCGATTCAGCAACAGAT TCTATAAACAGTTCTAGAAACAATTTGCGTTAAATTTGCCCAAAATTAAG AAATACTTAAATAATATTTTAGGAGTCTCAATTTTTTTCCGGTACCACAG CTCTGTGTTCCCTTTCGTGGGAGCAAAGTTATTTCTATAGCTCCGTAAAG CCATTTTTACTTTTTGCAAAATTGATTTTTGTTTTAACAATCGACCCATG GTCGTCGTTACAATATTTGTTGAAAGGTTTTGTTTATAATTTTTTCGACC TACACCGAATCATGAATCATCAAGCCATTAAGGCTACACATTCGGCTACA CATTCCAAAAAAATCGATCAAAGATTTTGTTTGGCCGAGGCGGGGCCGAG ATCAAGAAAGTGCTTTTCGGGTTTATATAAAACTGAAAGGCATTATGAGT AGACACAAACTTTTTATGAGAAAAAATAGGTTTGATATATTATGCTATCA TCATATATATTTCGAGTTTATCAATCGACTACTTATTATTTTTATCAAAA TATTGTTTTTTGCTGATAATTTATAATATTTGTTTATTAACGCTATATAA TATAAAACGGCGATTGTTTGAAAAGCAATCCTAATATTTTATTTTGAAAG AAAATGAAACAGCAAAATAATTCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045293XLOC_045293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073049-exon-scaffold_86-1575043694:1005436..1005477TCONS_00073049-exon-scaffold_86-1575043694:1005436..1005477Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1575043694:997140..997341TCONS_00073049-exon-scaffold_86-1575043694:997140..997341Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1575043694:996635..996708TCONS_00073049-exon-scaffold_86-1575043694:996635..996708Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1575043694:996179..996305TCONS_00073049-exon-scaffold_86-1575043694:996179..996305Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1575043694:994666..995223TCONS_00073049-exon-scaffold_86-1575043694:994666..995223Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1575043694:994119..994319TCONS_00073049-exon-scaffold_86-1575043694:994119..994319Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1575043694:994014..994062TCONS_00073049-exon-scaffold_86-1575043694:994014..994062Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1575043694:992051..993434TCONS_00073049-exon-scaffold_86-1575043694:992051..993434Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:1005436..1005477TCONS_00073049-exon-scaffold_86-1510915933:1005436..1005477Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:997140..997341TCONS_00073049-exon-scaffold_86-1510915933:997140..997341Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:996635..996708TCONS_00073049-exon-scaffold_86-1510915933:996635..996708Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:996179..996305TCONS_00073049-exon-scaffold_86-1510915933:996179..996305Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:994666..995223TCONS_00073049-exon-scaffold_86-1510915933:994666..995223Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:994119..994319TCONS_00073049-exon-scaffold_86-1510915933:994119..994319Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:994014..994062TCONS_00073049-exon-scaffold_86-1510915933:994014..994062Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1510915933:992051..993434TCONS_00073049-exon-scaffold_86-1510915933:992051..993434Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:1005436..1005477TCONS_00073049-exon-scaffold_86-1491911889:1005436..1005477Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:997140..997341TCONS_00073049-exon-scaffold_86-1491911889:997140..997341Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:996635..996708TCONS_00073049-exon-scaffold_86-1491911889:996635..996708Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:996179..996305TCONS_00073049-exon-scaffold_86-1491911889:996179..996305Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:994666..995223TCONS_00073049-exon-scaffold_86-1491911889:994666..995223Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:994119..994319TCONS_00073049-exon-scaffold_86-1491911889:994119..994319Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:994014..994062TCONS_00073049-exon-scaffold_86-1491911889:994014..994062Clytia hemisphaericaexon
TCONS_00073049-exon-scaffold_86-1491911889:992051..993434TCONS_00073049-exon-scaffold_86-1491911889:992051..993434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:992051..1005477 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0113939 5.21908 0.00190962 0.0026178 59.4135 39.937 12.7656 34.5934 11.9572 5.34764 19.5025 16.8692 3.96761 2.05412 0.00212456 0.00275258 12.503 13.9899 11.7672 0.633021 7.61505 15.5072 0.785741 1.27776 9.38831 17.9676 7.28072 5.50044 0.00703482 3.3386
Blast
BLAST of TCONS_00073049 vs. Swiss-Prot (Human)
Match: SOX21 (Transcription factor SOX-21 OS=Homo sapiens GN=SOX21 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.529e-31
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 1
Query:  286 NHVKRPMNAFMVWSRGKRRQMAQEHPRMHNSEISKRLGAQWKVLTPEEKQPFIDEAKRLRAVHIQEHP 489
            +HVKRPMNAFMVWSR +RR+MAQE+P+MHNSEISKRLGA+WK+LT  EK+PFIDEAKRLRA+H++EHP
Sbjct:    6 DHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHP 73          
The following BLAST results are available for this feature:
BLAST of TCONS_00073049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX212.529e-3179.41Transcription factor SOX-21 OS=Homo sapiens GN=SOX... [more]
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